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Jeff Squyres
686c2142e2 ompi/mca/common/monitoring: add x perms to Perl scripts 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-10 13:52:28 -05:00
Jeff Squyres
76a3f43459 Remove some stale contrib scripts 
All infrastructure code has long-since moved to the ompi-scripts git
repo.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-10 13:52:28 -05:00
Jeff Squyres
cb3d275ac0
Merge pull request #8116 from ggouaillardet/topic/fortran_real128 
configury: enhance the check for ISO_FORTRAN_ENV module
 2020-11-08 14:25:52 -05:00
Raghu Raja
7a922c8774
Merge pull request #8177 from rajachan/coverity-fixes 
Coverity fixes for recent OFI changes
 2020-11-06 08:48:29 -08:00
Jeff Squyres
3ea0658f4d
Merge pull request #8185 from jsquyres/pr/fix-getdate-woes 
config/Makefile.am: ensure getdate.sh is in dist tarball
 2020-11-05 15:10:03 -05:00
Jeff Squyres
a784a8431f PRRTE / OpenPMIx: update git submodule pointers 
Update to the latest master HEAD for both PRRTE and OpenPMIx to fix
some getdate.sh issues.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-05 11:33:47 -08:00
Jeff Squyres
a6a0d511f9 opal_functions.m4: add comment 
No code or logic changes.

Add commit about why it's ok to use $srcdir here
(vs. $OMPI_TOP_SRCDIR).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-05 08:32:39 -08:00
Jeff Squyres
91a5af83cd config/Makefile.am: ensure getdate.sh is in dist tarball 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-05 07:54:22 -08:00
Ralph Castain
62a76c9e7d
Merge pull request #8145 from rhc54/topic/up 
Update the PMIx and PRRTE pointers
 2020-11-04 07:11:11 -08:00
Ralph Castain
cb908348cb
Update the PMIx and PRRTE pointers 
Signed-off-by: Ralph Castain <rhc@pmix.org>
 2020-11-04 06:24:45 -08:00
Gilles Gouaillardet
38be947f8b
Merge pull request #8180 from ggouaillardet/topic/avx512_pgi 
op/avx: check for _mm512_mullo_epi64() AVX512 intrinsic
 2020-11-04 15:27:33 +09:00
Gilles Gouaillardet
26e42f9a0c op/avx: check for _mm512_mullo_epi64() AVX512 intrinsic 
PGI (20.4) compiler do not define this intrinsic, so only build
AVX512 support if _mm512_mullo_epi64() intrisic is defined.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-11-04 14:45:03 +09:00
Raghu Raja
917269b699 Coverity fixes for recent OFI changes 
8017f12 introduced a new function to get the package rank of a process,
which had a pass-by-value signature (opal_process_info_t); and coverity
was not happy about it. This commit changes the signature to take a
reference to opal_process_info_t instead.

Signed-off-by: Raghu Raja <craghun@amazon.com>
 2020-11-04 00:18:54 +00:00
Yossi Itigin
1f3e33441c
Merge pull request #8140 from hoopoepg/topic/pml-ucx-recv-improved-errhandling 
PML/UCX: improved error processing in MPI_Recv
 2020-11-03 13:08:42 +02:00
Gilles Gouaillardet
41a3850efb
Merge pull request #8167 from jsquyres/pr/gitignore-sym-linked-use-mpi-f08-files 
.gitignore: ignore sym linked F08 profile bindings
 2020-11-03 12:40:12 +09:00
Jeff Squyres
19f4fe95e8
Merge pull request #8168 from jsquyres/pr/different-compiler-default-search-paths 
README: Provide example of differing linker search paths
 2020-11-02 18:27:53 -05:00
Jeff Squyres
e9e5dab8b9
Merge pull request #8153 from dancejic/multi 
Using package_rank to select between NIC of equal distance from the process.
 2020-11-02 15:27:37 -05:00
Sergey Oblomov
eb9405d53f PML/UCX: improved error processing in MPI_Recv 
- improved error processing in MPI_Recv implementation
  of pml UCX
- added error handling for pml_ucx_mrecv call

Signed-off-by: Sergey Oblomov <sergeyo@nvidia.com>
 2020-11-02 11:25:28 +02:00
Nikola Dancejic
8017f12801 Using package_rank to select between NIC of equal distance from the process. 
If PMIX_PACKAGE_RANK is available, uses this value to select between multiple
NIC of equal distance between the current process. If this value is not
available, try to calculate it by getting the locality string from each local
process and assign a package_rank. If everything fails, fall back to using
process_id.rank to select the NIC. This last case is not ideal, but has a small
chance of occuring, and causes an output to be displayed to notify that this is
occuring.

Signed-off-by: Nikola Dancejic <dancejic@amazon.com>
 2020-11-02 00:32:03 -08:00
Jeff Squyres
5d9a3c2839 README: Provide example of differing linker search paths 
I ran into this exact case on MacOS (the C and Fortran compiler have
different default linker search paths).  Technically, we've always had
this problem, but it has just become a bit more likely for real people
to run into because we're now preferring the system-installed
Libevent.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-01 13:29:59 -05:00
Jeff Squyres
bd9d7f815f .gitignore: ignore sym linked F08 profile bindings 
A recent commit made the use_mpi_f08 bindings sym link into their
profile directory (just like we do for C and other bindings) instead
of having standalone PMPI-ized copies of the bindings.  Make sure to
.gitignore the sym linked files.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-11-01 13:21:31 -05:00
Jeff Squyres
5b25a06c7d
Merge pull request #8165 from Fangcong-Yin/latest_pr 
Convert 12 .3in files to md
 2020-10-31 22:41:11 -04:00
Fangcong-Yin
7ee34e9c20 Convert 12 .3in files to md 
Signed-off-by: Fangcong Yin <fyin2@nd.edu>
Convert MPI_Graph_create.3in - MPI_Group_intersection.3in to md files

Update ompi/mpi/man/man3/MPI_Grequest_complete.md

Signed-off-by: Fangcong Yin <fyin2@nd.edu>

Co-authored-by: Jeff Squyres <jsquyres@users.noreply.github.com>

Update ompi/mpi/man/man3/MPI_Group_excl.md

Signed-off-by: Fangcong Yin <fyin2@nd.edu>

Co-authored-by: Jeff Squyres <jsquyres@users.noreply.github.com>
 2020-10-31 15:09:26 -04:00
Jeff Squyres
6f2a5b91cd
Merge pull request #8162 from Colton-K/pr/MPI_C_batch2 
Converted batch 2 of MPI_C* (MPI_Comm_accept - MPI_Comm_dup_with_info)
 2020-10-31 13:20:14 -04:00
Colton Kammes
ee3bd5859e Converted batch 2 of MPI_C* (MPI_Comm_accept - MPI_Comm_dup_with_info) 
Signed-off-by: Colton Kammes <ckammes@nd.edu>
 2020-10-31 10:02:37 -04:00
Jeff Squyres
fe03602d1f
Merge pull request #8163 from jsquyres/pr/keyval-parse-tweaks 
Minor fix to keyval_parse
 2020-10-31 09:42:12 -04:00
Jeff Squyres
c7b968ef20
Merge pull request #6903 from ggouaillardet/topic/use-mpi-f08-profile 
fortran/use-mpi-f08: generates PMPI bindings from the MPI bindings
 2020-10-31 09:41:49 -04:00
Jeff Squyres
8ed1d28fb4 keyval_parse.c: update whitespace/comments 
Slightly improve comments and update some whitespace.

No code or logic changes.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-10-31 04:16:00 -07:00
Jeff Squyres
eac0ab5c3a keyval_parse.c: ensure to init values 
Coverity complained about uninitialized variables; ensure that they
are initialized to 0 in all cases.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-10-31 04:11:49 -07:00
Jeff Squyres
400c005d04
Merge pull request #8161 from Fangcong-Yin/latest_pr 
Convert MPI_Gather.3in - MPI_Get_version.3in to md
 2020-10-30 21:13:54 -04:00
Jeff Squyres
b239715f93
Merge pull request #8158 from Colton-K/pr/MPI_C_first_half 
Converted first half of MPI_C* (from MPI_Cancel to MPI_Close_port)
 2020-10-30 21:13:42 -04:00
Fangcong-Yin
d85bf3ae1a Convert MPI_Gather.3in - MPI_Get_version.3in to md 
Signed-off-by: Fangcong Yin (fyin2@nd.edu)
 2020-10-30 20:03:59 -04:00
Colton Kammes
a08f8d30dd Converted first half of MPI_C* (from MPI_Cancel to MPI_Close_port) 
Signed-off-by: Colton Kammes <ckammes@nd.edu>
 2020-10-30 18:25:22 -04:00
Jeff Squyres
dca2058e2f
Merge pull request #8144 from devreal/fix_opal_add_to_env_str_alloc 
OPAL: fix string buffer allocation for large env variables
 2020-10-30 14:39:01 -04:00
Jeff Squyres
25e47411e0
Merge pull request #8159 from jsquyres/pr/fix-coll-and-adapt-warnings 
coll/adapt and coll/han: fix trivial compiler warnings
 2020-10-30 14:34:16 -04:00
Jeff Squyres
f813656d24
Merge pull request #8154 from Fangcong-Yin/latest_pr 
Convert MPI_File_write_ordered.3in - MPI_Free_mem.3in to md
 2020-10-30 10:44:23 -04:00
Jeff Squyres
ee405ccaa5 coll/adapt and coll/han: fix trivial compiler warnings 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-10-30 10:41:14 -04:00
Jeff Squyres
548f5dbe47
Merge pull request #8135 from Colton-K/pr/all-MPI_B 
Convert rest of the MPI_B* man pages to Markdown
 2020-10-30 10:30:51 -04:00
Fangcong-Yin
82081118d6 Convert MPI_File_write_ordered.3in - MPI_Free_mem.3in to md 
Signed-off-by: Fangcong Yin (fyin2@nd.edu)

Convert MPI_File_write_ordered.3in - MPI_Free_mem.3in to md
Signed-off-by: Fangcong Yin (fyin2@nd.edu)

Convert MPI_File_write_ordered.3in - MPI_Free_mem.3in to md
Signed-off_by: Fangcong Yin (fyin2@nd.edu)
 2020-10-30 10:11:19 -04:00
Joseph Schuchart
320a9a1660 OPAL: fix string buffer allocation for large env variables 
Signed-off-by: Joseph Schuchart <schuchart@icl.utk.edu>
 2020-10-30 14:28:23 +01:00
Colton Kammes
cded23fe9b Finished converting MPI_B section into markdown files 
Signed-off-by: Colton Kammes <ckammes@nd.edu>
 2020-10-30 09:19:01 -04:00
Gilles Gouaillardet
8c2b916048 fortran/use-mpi-tkr: revamp PMPI_* declarations 
only declare MPI_* bindings and use macros to deduce the PMPI_* bindings

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-10-30 14:00:42 +09:00
Gilles Gouaillardet
e981e46446 fortran/use-mpi-ignore-tkr: revamp PMPI_* declarations 
only declare MPI_* bindings and use macros to deduce the PMPI_* bindings

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-10-30 14:00:42 +09:00
Gilles Gouaillardet
c2e3df6d3e fortran/use-mpi-f08: simplify mod/mpi-f08-interfaces.h 
have this file generated at configure time and use the
@OMPI_FORTRAN_IGNORE_TKR_PREDECL@ and @OMPI_FORTRAN_IGNORE_TKR_TYPE@
variable for buffer definitions

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-10-30 13:58:48 +09:00
Gilles Gouaillardet
5219241d13 fortran/use-mpi-f08: generates PMPI bindings from the MPI bindings 
- via the OMPI_BUILD_MPI_PROFILING macro, avoid the need to have two distinct
   source files for MPI_* and PMPI_* bindings.
 - move the PMPI bindings into ompi/mpi/fortran/use-mpi-f08/profile.
 - remove an useless dependency to mpi-f08.lo
 - share most of mod/[p]mpi-f08-interfaces.F90 code in a single mod/mpi-f08-interfaces.h

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2020-10-30 13:58:48 +09:00
Jeff Squyres
3ba35c97ce
Merge pull request #8152 from jsquyres/pr/macos-portability-fixes 
MacOS portability fixes
 2020-10-29 09:33:47 -04:00
Jeff Squyres
89920bac4c getdate.sh: make the date(1) usage more portable 
There are several different flavors of date(1) out there.  Try a few
different CLI options for date(1) to see which one works.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-10-29 06:26:12 -04:00
Jeff Squyres
ddf216b0a3 configure.ac: Add workaround on MacOS for "readlink -f" 
MacOS does not have "readlink -f" or "realpath", so use the
MacOS-provided Python, which we know has os.path.realpath().

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2020-10-28 22:47:28 -04:00
bosilca
d330551547
Merge pull request #8146 from bosilca/fix/han_coverity 
Fix HAN issues reported by Coverity.
 2020-10-28 18:40:14 -04:00
George Bosilca
154117515a Fix HAN issues reported by Coverity. 
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2020-10-28 15:44:16 -04:00