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8599 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
679dc9b437 Fix the subarray and darray type creation. Include a
small patch provided by Gilles.
2015-10-26 23:44:26 -04:00
yohann
a111d66f0f mtl/ofi: Change hints to FI_PROGRESS_MANUAL. 2015-10-26 15:32:30 -07:00
yohann
fde8b89ceb mtl/ofi: Use OFI's representation of ANY_SRC instead of NULL. 2015-10-26 14:38:41 -07:00
yohann
4246de4508 mtl/ofi: Treat error correctly. 2015-10-26 14:38:33 -07:00
George Bosilca
2622b9d3a1 Fix minor issues in the treematch topo
based on a patch provided by Guillaume.
2015-10-25 21:38:59 -04:00
Gilles Gouaillardet
1105634ca1 mpi_f08: fix MPI_WIN_{ATTACH,DETACH} bindings
fixes INTENT from open-mpi/ompi@9600e2bc63

Thanks Jeff for pointing this !
2015-10-26 10:02:45 +09:00
George Bosilca
4ac247b1da Minor updated on the validity checks for the alltoall collectives. 2015-10-24 15:25:28 -04:00
Jeff Squyres
140cf90e3e osc_rdma: minor compiler warning stomp 2015-10-23 06:21:56 -07:00
Ralph Castain
4c12022a50 Silence a couple of warnings from valgrind and compilers. Since some pmix components may return success with a NULL value from a "get", check for that situation before attempting to unload the data. Preset the hostname before calling modex_recv to get it so unload properly checks for NULL. Cast a returned value to the correct ompi_proc_t pointer 2015-10-22 20:56:02 -07:00
Nathan Hjelm
9dad35b467 Merge pull request #1061 from hjelmn/osc_fixes
one-sided fixes
2015-10-22 18:23:19 -06:00
Nathan Hjelm
63e744ffc6 osc/rdma: use only a single btl registration for local state
This commit fixes a bug that can occur on Cray Gemini networks. If
multiple registrations are used for the local state then we looks the
atomicity guarantees. To avoid issues like this use only a single
registration handle for all local state on a node.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-22 15:51:19 -06:00
Nathan Hjelm
f690fc8fd5 osc/pt2pt: fix warnings
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-22 15:50:40 -06:00
Nathan Hjelm
e716866e0c Merge pull request #1057 from hjelmn/binding_fix
win: fix erroneous argument check
2015-10-22 15:15:43 -06:00
Jeff Squyres
86270e7613 MPI_File_open: add note about allowable chars in filenames
Thanks to @nasailja for the original text suggestion.
2015-10-22 11:56:53 -07:00
Nathan Hjelm
e4219aa692 Merge pull request #1059 from hjelmn/osc_fixes
osc/rdma: bug fixes
2015-10-22 11:25:51 -06:00
Nathan Hjelm
97c9732bad osc/rdma: bug fixes
This commit fixes the following:

 - CIDs 1328491, 1328492: Dead code caused by typos in a prior
   commit.

 - Fix the calculation of dynamic memory regions. This was causes
   incorrect RMA range errors when accessing the last partial page of
   an attachment.

 - Fix a SEGV when using dynamic memory windows with local state (all
   processes on the same node).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-22 09:49:38 -06:00
yohann
889c76634e mtl/ofi: Increase priority. 2015-10-22 08:39:36 -07:00
Nathan Hjelm
6ae57647ab win: fix erroneous argument check
When using dynamic memory windows the displacement becomes a
pointer. Since the high bit may be set on valid pointers on some
platforms the check for disp > 0 is invalid. This commit adds the
window flavor to ompi_win_t and disables the displacement check when
operating on dynamic memory windows.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-22 09:33:26 -06:00
Howard Pritchard
ce8e241922 Merge pull request #1055 from nrgraham23/java_warnings_fix
Fix Java related warnings
2015-10-22 08:17:45 -06:00
Nathan Hjelm
b2fa2a9bef Merge pull request #1056 from hjelmn/osc_fixes
osc/pt2pt: reset all_sync sync object before sending complete messages
2015-10-21 19:40:28 -06:00
Nathan Hjelm
864f88a2a3 osc/pt2pt: reset all_sync sync object before sending complete messages
This commit fixes a bug that occurs when a post message comes in when
sending complete messages or while waiting for all outgoing messages
to flush. In that case the post message might get incorrecly
associated with the ending sync object.

References open-mpi/ompi#1012

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-21 18:30:08 -06:00
Nathaniel Graham
c4d70ab425 Fix Java related warnings
This commit fixes java related warnings.

Fixes #881

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-10-21 17:14:25 -07:00
Nathan Hjelm
386991d590 Merge pull request #1052 from hjelmn/osc_rdma_fixes
osc/rdma: use standard verbosity levels
2015-10-21 13:21:50 -06:00
Nathan Hjelm
9476c7bbca osc/rdma: use standard verbosity levels
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-21 12:31:41 -06:00
yohann
abe5002ee9 mtl/ofi: remove threading and progress hints. 2015-10-21 10:25:08 -07:00
yosefe
cc76db8d39 ucx: reduce components priority to 5. 2015-10-21 17:38:25 +03:00
Gilles Gouaillardet
a0782e1c7e mpi: MPI_Neighbor_all* and MPI_Ineighbor_all* do not work with
inter communicators (fail with MPI_ERR_COMM) or non process topologies
communicators (fail with MPI_ERR_TOPOLOGY)
2015-10-21 16:21:19 +09:00
Mike Dubman
4ea13f10f6 Merge pull request #1008 from alex-mikheev/topic/ucx_support
UCX support for ompi and oshmem
2015-10-21 09:33:33 +03:00
Gilles Gouaillardet
3b0b929883 ompi: MPI_IN_PLACE is not a valid argument of MPI_Neighbor_all* and MPI_Ineighbor_all* 2015-10-21 14:46:35 +09:00
Gilles Gouaillardet
256976a108 mpi: MPI_IN_PLACE is not a valid argument of MPI_All* and MPI_Iall* with an inter communicator 2015-10-21 14:46:28 +09:00
Gilles Gouaillardet
9b31530d5c man: misc fix of revamp of MPI_File_* and MPI_Register_datarep man pages
that fixes commit open-mpi/ompi@b17c89c1e6 :
- remove unnecessary empty lines
- add USE mpi in MPI_Register_datarep

Thanks Jeff for noticing this
2015-10-21 09:41:01 +09:00
Nathan Hjelm
763744a32c Merge pull request #1046 from hjelmn/osc_rdma_fixes
osc/rdma: bug fixes
2015-10-20 16:44:38 -06:00
Nathan Hjelm
b8ee05d352 osc/rdma: bug fixes
This commit fixes several bugs in the osc/rdma component:

 - Complete aggregated requests immediately. Completion of RMA
   requests indicates local completion anyway. This fixes a hang in
   the c_reqops test.

 - Correctly mark Rget_accumulate requests.

 - Set the local base flag correctly on the local peer.

 - Clear or set the no locks flag on the window if the value is
   changed by MPI_Win_set_info.

 - Actually update the target when using MPI_OP_REPLACE.

Fixes open-mpi/ompi#1010

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-20 15:27:15 -06:00
Ryan Grant
f60c506c68 Merge pull request #999 from tkordenbrock/topic/add.triggered.gather
coll-portals4: add gather and igather implementations that use Portals4 triggered operations
2015-10-20 14:59:09 -06:00
yosefe
a313588337 ompi: Add UCX PML. 2015-10-20 19:46:06 +03:00
yosefe
502dc8aaa4 add pml-specific field in OMPI datatype.
PML UCX will use it to cache a handle for UCX datatype.
2015-10-20 19:46:06 +03:00
Jeff Squyres
630d6bf800 Merge pull request #1038 from kawashima-fj/pr/man-correction
man: Various manpage corrections
2015-10-20 06:40:05 -04:00
KAWASHIMA Takahiro
7ab464fbb4 Revert "man: Remove unnecessary spaces in front of parameters."
This reverts commit 3253a30ab2922fa9eef2e0b5e7843a949a650853.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
2015-10-20 15:32:45 +09:00
KAWASHIMA Takahiro
373a94a3f1 man: Revert my MPI_File_iwrite_shared manpage change.
This reverts commit 2226cdb3dacd21dcf7e9836db57ddb9d7936ac43
and                 d9c93c9f5d71c7e8cecedb2bed39d8d33029baf1.

Because Gilles' b17c89c1 committed a few hours ago has the same change,
my RP branch had a conflict.
2015-10-20 14:41:22 +09:00
Gilles Gouaillardet
2bd77ed4f9 mpi: fail with MPI_ERR_INTERN if MPI_IN_PLACE is used with MPI_I*alltoall*
currently, MPI fails with MPI_ERR_ARG. This is counter intuitive since
MPI_IN_PLACE is a legitimate parameter. MPI_IN_PLACE might not be correctly
implemented by all the non blocking modules (libnbc, ...) so fail with
MPI_ERR_INTERN for the time being.
2015-10-20 14:12:33 +09:00
Gilles Gouaillardet
b17c89c1e6 man: revamp MPI_File_* and MPI_Register_datarep man pages
- suggest USE mpi instead of INCLUDE 'mpif.h'
- fix indentation
Thanks Jeff for pointing this issue.
2015-10-20 13:12:12 +09:00
KAWASHIMA Takahiro
d9c93c9f5d man: Add const that is removed accidentally in 2226cdb. 2015-10-20 08:49:10 +09:00
Nathan Hjelm
9602484568 Merge pull request #1040 from hjelmn/mtl_priority
Change how cm's priority is calculated
2015-10-19 14:18:36 -06:00
Nathan Hjelm
53f6b57c0a pml/cm: use the priority of the mtl component
This commit changes the priority of mtl components to be relative to
pml/ob1 and updates the mtl interface to expose this priority. cm now
sets its own priority based on the priority of the selected mtl
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-19 12:32:42 -06:00
Nathan Hjelm
8b5810f7f7 mca/base: add priority output to mca_base_select
The mca_base_select function uses returned priorities to select the
best component/module. This priority may be of use to the caller so
pass that information back in an optional argument. If the priority is
not needed pass NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-19 12:32:41 -06:00
Nathan Hjelm
bedd80214e pml/ob1: remove priority check
This commit removes code that checks the ob1 priority vs the previous
priority. The previous priority is meaningless here and may only cause
ob1 to disable itself when it shouldn't.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-19 12:32:41 -06:00
Nathan Hjelm
2fd176ac7f cm: fix selection priority
This patch removes a priority check that disables cm if the previous
pml had higher priority. The check was incorrect as coded and is
unnecessary as we finalize all but one pml anyway.

Fixes open-mpi/ompi#1035

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-10-19 12:32:26 -06:00
Gilles Gouaillardet
0f23037775 coll/base: fix memory allocation in mca_coll_base_alltoall_intra_basic_inplace 2015-10-19 16:47:59 +09:00
KAWASHIMA Takahiro
7fef70c9b8 man: Add MPI_DIST_GRAPH in MPI_TOPO_TEST manpage.
`MPI_DIST_GRAPH` was added in MPI-2.2.
2015-10-19 15:24:12 +09:00
KAWASHIMA Takahiro
d3a29e364c man: Change 'MPI ADDRESS KIND' to 'MPI_ADDRESS_KIND'.
(underscores instead of spaces)
2015-10-19 15:11:06 +09:00