This has been a long-time problem. I tried to reduce the problem by having the orteds tell the HNP they were finalizing, and having the HNP wait until all orteds had reported or we timed out.
What was observed was that all the orteds were correctly reporting that they are leaving, but the HNP is able to exit before the orteds, thus closing the orteds lifeline socket and generating the error output. This is caused by the fact that the orteds have to whack all remaining session directories, which includes that blasted monster shared memory file! Cleaning up the SM file can take quite a while.
The HNP doesn't have that problem as there is no SM file there! So it gets out first.
What we had done in the past to resolve that problem was put a little test in the OOB that checks to see if we are finalizing. If we are, then we ignore the lifeline connection being lost. That check was still in the code - however, we had lost the line in orte_finalize that set the flag!!
This commit was SVN r17893.
Fix race conditions in abnormal terminations. We had done a first-cut at this in a prior commit. However, the window remained partially open due to the fact that the HNP has multiple paths leading to orte_finalize. Most of our frameworks don't care if they are finalized more than once, but one of them does, which meant we segfaulted if orte_finalize got called more than once. Besides, we really shouldn't be doing that anyway.
So we now introduce a set of atomic locks that prevent us from multiply calling abort, attempting to call orte_finalize, etc. My initial tests indicate this is working cleanly, but since it is a race condition issue, more testing will have to be done before we know for sure that this problem has been licked.
Also, some updates relevant to the tool comm library snuck in here. Since those also touched the orted code (as did the prior changes), I didn't want to attempt to separate them out - besides, they are coming in soon anyway. More on them later as that functionality approaches completion.
This commit was SVN r17843.
Also, update some properties (source files should not be executeable...), and remove a couple unneeded inclusions of orte_proc_table.h
This commit was SVN r17655.
Basically, the method employed here is to have a recv create a zero-time timer event that causes the event library to execute a function that processes the message once the recv returns. Thus, any action taken as a result of processing the message occur outside of a recv.
Created two new macros to assist:
ORTE_MESSAGE_EVENT: creates the zero-time event, passing info in a new orte_message_event_t object
ORTE_PROGRESSED_WAIT: while waiting for specified conditions, just calls progress so messages can be recv'd.
Also fixed the failed_launch function as we no longer block in the orted callback function. Updated the error messages to reflect revision. No change in API to this function, but PLM "owners" may want to check their internal error messages to avoid duplication and excessive output.
This has been tested on Mac, TM, and SLURM.
This commit was SVN r17647.
necessary (it already uses blocking semantics while waiting for events
on fd's, so it's not taking more cycles from MPI applications than
necessary), or this can/will cause lengthy delays in orted processing.
The problem we most recently saw was with routed OOB messages getting
significantly delayed before being delivered to the target MPI
processes. This was problematic for BTLs that use OOB messaging for
wireup. There is a lengthy comment in orted_main.c that describes
this in more detail.
Setting the orted to not voluntarily call yield() prevents this bad
behavior. The orted only runs in small bursts anyway (and blocks the
rest of the time), so this is not harmful to application performance.
This commit was SVN r16365.
The commit has been tested for C/R and Cray operations, and on Odin (SLURM, rsh) and RoadRunner (TM). I tried to update all environments, but obviously could not test them. I know that Windows needs some work, and have highlighted what is know to be needed in the odls process component.
This represents a lot of work by Brian, Tim P, Josh, and myself, with much advice from Jeff and others. For posterity, I have appended a copy of the email describing the work that was done:
As we have repeatedly noted, the modex operation in MPI_Init is the single greatest consumer of time during startup. To-date, we have executed that operation as an ORTE stage gate that held the process until a startup message containing all required modex (and OOB contact info - see #3 below) info could be sent to it. Each process would send its data to the HNP's registry, which assembled and sent the message when all processes had reported in.
In addition, ORTE had taken responsibility for monitoring process status as it progressed through a series of "stage gates". The process reported its status at each gate, and ORTE would then send a "release" message once all procs had reported in.
The incoming changes revamp these procedures in three ways:
1. eliminating the ORTE stage gate system and cleanly delineating responsibility between the OMPI and ORTE layers for MPI init/finalize. The modex stage gate (STG1) has been replaced by a collective operation in the modex itself that performs an allgather on the required modex info. The allgather is implemented using the orte_grpcomm framework since the BTL's are not active at that point. At the moment, the grpcomm framework only has a "basic" component analogous to OMPI's "basic" coll framework - I would recommend that the MPI team create additional, more advanced components to improve performance of this step.
The other stage gates have been replaced by orte_grpcomm barrier functions. We tried to use MPI barriers instead (since the BTL's are active at that point), but - as we discussed on the telecon - these are not currently true barriers so the job would hang when we fell through while messages were still in process. Note that the grpcomm barrier doesn't actually resolve that problem, but Brian has pointed out that we are unlikely to ever see it violated. Again, you might want to spend a little time on an advanced barrier algorithm as the one in "basic" is very simplistic.
Summarizing this change: ORTE no longer tracks process state nor has direct responsibility for synchronizing jobs. This is now done via collective operations within the MPI layer, albeit using ORTE collective communication services. I -strongly- urge the MPI team to implement advanced collective algorithms to improve the performance of this critical procedure.
2. reducing the volume of data exchanged during modex. Data in the modex consisted of the process name, the name of the node where that process is located (expressed as a string), plus a string representation of all contact info. The nodename was required in order for the modex to determine if the process was local or not - in addition, some people like to have it to print pretty error messages when a connection failed.
The size of this data has been reduced in three ways:
(a) reducing the size of the process name itself. The process name consisted of two 32-bit fields for the jobid and vpid. This is far larger than any current system, or system likely to exist in the near future, can support. Accordingly, the default size of these fields has been reduced to 16-bits, which means you can have 32k procs in each of 32k jobs. Since the daemons must have a vpid, and we require one daemon/node, this also restricts the default configuration to 32k nodes.
To support any future "mega-clusters", a configuration option --enable-jumbo-apps has been added. This option increases the jobid and vpid field sizes to 32-bits. Someday, if necessary, someone can add yet another option to increase them to 64-bits, I suppose.
(b) replacing the string nodename with an integer nodeid. Since we have one daemon/node, the nodeid corresponds to the local daemon's vpid. This replaces an often lengthy string with only 2 (or at most 4) bytes, a substantial reduction.
(c) when the mca param requesting that nodenames be sent to support pretty error messages, a second mca param is now used to request FQDN - otherwise, the domain name is stripped (by default) from the message to save space. If someone wants to combine those into a single param somehow (perhaps with an argument?), they are welcome to do so - I didn't want to alter what people are already using.
While these may seem like small savings, they actually amount to a significant impact when aggregated across the entire modex operation. Since every proc must receive the modex data regardless of the collective used to send it, just reducing the size of the process name removes nearly 400MBytes of communication from a 32k proc job (admittedly, much of this comm may occur in parallel). So it does add up pretty quickly.
3. routing RML messages to reduce connections. The default messaging system remains point-to-point - i.e., each proc opens a socket to every proc it communicates with and sends its messages directly. A new option uses the orteds as routers - i.e., each proc only opens a single socket to its local orted. All messages are sent from the proc to the orted, which forwards the message to the orted on the node where the intended recipient proc is located - that orted then forwards the message to its local proc (the recipient). This greatly reduces the connection storm we have encountered during startup.
It also has the benefit of removing the sharing of every proc's OOB contact with every other proc. The orted routing tables are populated during launch since every orted gets a map of where every proc is being placed. Each proc, therefore, only needs to know the contact info for its local daemon, which is passed in via the environment when the proc is fork/exec'd by the daemon. This alone removes ~50 bytes/process of communication that was in the current STG1 startup message - so for our 32k proc job, this saves us roughly 32k*50 = 1.6MBytes sent to 32k procs = 51GBytes of messaging.
Note that you can use the new routing method by specifying -mca routed tree - if you so desire. This mode will become the default at some point in the future.
There are a few minor additional changes in the commit that I'll just note in passing:
* propagation of command line mca params to the orteds - fixes ticket #1073. See note there for details.
* requiring of "finalize" prior to "exit" for MPI procs - fixes ticket #1144. See note there for details.
* cleanup of some stale header files
This commit was SVN r16364.
Remove unnecessary locks because functions that are calling this
function proper lock/unlock the orted_comm_mutex. Therefore this
unlocks cause some imballance.
This commit was SVN r15630.
* General TCP cleanup for OPAL / ORTE
* Simplifying the OOB by moving much of the logic into the RML
* Allowing the OOB RML component to do routing of messages
* Adding a component framework for handling routing tables
* Moving the xcast functionality from the OOB base to its own framework
Includes merge from tmp/bwb-oob-rml-merge revisions:
r15506, r15507, r15508, r15510, r15511, r15512, r15513
This commit was SVN r15528.
The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
r15506
r15507
r15508
r15510
r15511
r15512
r15513
Cleanup ALL instances of output involving the printing of orte_process_name_t structures using the ORTE_NAME_ARGS macro so that the number of fields and type of data match. Replace those values with a new macro/function pair ORTE_NAME_PRINT that outputs a string (using the new thread safe data capability) so that any future changes to the printing of those structures can be accomplished with a change to a single point.
Note that I could not possibly find outputs that directly print the orte_process_name_t fields, but only dealt with those that used ORTE_NAME_ARGS. Hence, you may still have a few outputs that bark during compilation. Also, I could only verify those that fall within environments I can compile on, so other environments may yield some minor warnings.
This commit was SVN r15517.
This fixes C/R support for the trunk which regressed in r15390 due to the RTE
changes.
This commit was SVN r15409.
The following SVN revision numbers were found above:
r15219 --> open-mpi/ompi@f88aa6c273
r15390 --> open-mpi/ompi@bd65f8ba88
The problem stemmed from no longer launching a local orted on the same node as mpirun. The orted would save and reuse the base environment. Mpirun didn't do that, and the odls was using the orted's globally saved environment (which wasn't being set).
This fix establishes a globally accessible base launch environment that both the orted and mpirun can utilize. Since we now use that, we don't need to pass it to the odls_launch_proc function, so remove that param from the API (and modify all components to handle the change).
This commit was SVN r15405.
Short description: major changes include -
1. singletons now fork/exec a local daemon to manage their operations.
2. the orte daemon code now resides in libopen-rte
3. daemons no longer use the orte triggering system during startup. Instead, they directly call back to their parent pls component to report ready to operate. A base function to count the callbacks has been provided.
I have modified all the pls components except xcpu and poe (don't understand either well enough to do it). Full functionality has been verified for rsh, SLURM, and TM systems. Compile has been verified for xgrid and gridengine.
This commit was SVN r15390.
