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Граф коммитов

20294 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
5e9347bfb4 Fix deallocation error in mca_common_sm_rml_info_bcast()
buffer is sent (num_local_procs-1) time, so it should be
OBJ_RETAIN'ed (num_local_procs-2) time

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31874.
2014-05-22 04:53:42 +00:00
Ralph Castain
7480a680e3 Turns out that valgrind has issues with strings that don't fall on nice 4-byte alignments with some optimized builds. So make the default security credential a nice 7-characters (so we get 8-bytes with the NULL terminator) to make valgrind shut up.
Thanks to Walter Spector for reporting this.

cmr=v1.8.2:reviewer=jsquyres:subject=align the default sec credential

This commit was SVN r31873.
2014-05-22 00:36:25 +00:00
Jeff Squyres
af5399ab5b Gah; we need to have a unique barrier ID for the ompi_rte_barrier()
operation.  Ralph will fix shortly.

For the time being, put back the original code...

Refs trac:4669

This commit was SVN r31872.

The following Trac tickets were found above:
  Ticket 4669 --> https://svn.open-mpi.org/trac/ompi/ticket/4669
2014-05-22 00:31:39 +00:00
Jeff Squyres
c860f289ab usnic: re-order teardown sequence now that del_procs() is actually called
Now that the infrastructure is calling BTL del_procs() before the BTL
finalize(), the usnic BTL had to re-order some of its teardown
sequence to avoid assert() failing.

This is part of a larger conversation involving #4669.  Since
MPI_FINALIZE and MPI_COMM_DISCONNECT currently use an
oob/grpcomm-based barrier, the usnic BTL can ''absolutely know'' that
these endpoints and procs will no longer be used.  If the ORTE DPM
goes back to a PML-based barrier, the usnic BTL will need to grow more
complex teardown semantics (a la TCP socket FIN/ACK/FIN_WAIT states).

Refs trac:4669

This commit was SVN r31871.

The following Trac tickets were found above:
  Ticket 4669 --> https://svn.open-mpi.org/trac/ompi/ticket/4669
2014-05-21 23:59:17 +00:00
Jeff Squyres
5aa05f2f1d Potentially temporarily change the barrier in the ORTE DPM component
to be based on grpcomm (i.e., an out-of-band based barrier) rather
than the simplistic PML-based barrier that it currently uses.

This is pending a larger discussion with Nathan and George, but it
will allow the usnic BTL to stop assert()-failing in light of the
recent del_procs() change.

This commit was SVN r31870.
2014-05-21 23:09:01 +00:00
Jeff Squyres
e532ab3020 atomic_impl.h: fix trivial typos in comments
cmr=v1.8.2:ticket=trac:4664

This commit was SVN r31858.

The following Trac tickets were found above:
  Ticket 4664 --> https://svn.open-mpi.org/trac/ompi/ticket/4664
2014-05-21 17:18:18 +00:00
Mike Dubman
c7723c0dcc update
This commit was SVN r31857.
2014-05-21 13:08:36 +00:00
Mike Dubman
5dd4c68a0f OSHMEM: use bulk connect/disconnect API
fixed by Yossi, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31856.
2014-05-21 08:00:21 +00:00
Mike Dubman
fad1063980 MXM: fix warning
reviewed by Yossi

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31855.
2014-05-21 07:50:05 +00:00
George Bosilca
cc0239d52f Remove unused variables.
This commit was SVN r31846.
2014-05-21 01:34:26 +00:00
George Bosilca
7ca7b54718 Removes few unreacheable warnings. This is somehow related to the
ticket #2645.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31845.
2014-05-21 00:06:04 +00:00
Oscar Vega-Gisbert
c58900da95 Java-oshmem: some examples
This commit was SVN r31844.
2014-05-20 21:47:45 +00:00
Oscar Vega-Gisbert
1f017344ad Java-oshmem: replace Addr.offset/duplicate by slice
This commit was SVN r31843.
2014-05-20 21:12:39 +00:00
Oscar Vega-Gisbert
d42f03eb1f OSHMEM: rename atomic fetch&inc from 'pshmem_*' to 'shmem_*'
This commit was SVN r31842.
2014-05-20 20:45:07 +00:00
Jeff Squyres
b0a6e42f45 pml ob1: use the pre-computed size from the free lists
Based on a suggestion from George on #31806, use the pre-computed
sizes rather than duplicating the computation math (which may change
someday in the future).

cmr=v1.8.2:ticket=trac:4647

This commit was SVN r31841.

The following Trac tickets were found above:
  Ticket 4647 --> https://svn.open-mpi.org/trac/ompi/ticket/4647
2014-05-20 20:32:25 +00:00
Mike Dubman
a7cec59ec3 OSHMEM: missing APIs are back and can be used.
fixed by Roman, reviewed by MikeD

This commit was SVN r31840.
2014-05-20 20:11:41 +00:00
George Bosilca
db9660264e Update the error message to pinpoint the right location.
Thanks Tim.

This commit was SVN r31839.
2014-05-20 20:08:42 +00:00
George Bosilca
685f051557 Move the allocator initialization from open to init. This clean
a memory leak. Similar changes shuld be applied to all the 
other PML that are copies of OB1. This patch is related to
#4653.

This commit was SVN r31838.
2014-05-20 19:34:18 +00:00
Jeff Squyres
f8e37be1a9 oshmem/java: Add missing file to Makefile.am
cmr=v1.8.2:reviewer=osvegis

This commit was SVN r31837.
2014-05-20 16:32:41 +00:00
Gilles Gouaillardet
baf532087a Fix mca_coll_basic_alltoallw_inter()
Avoid sending/receiving zero size messages in order to be compliant
with the top-level modification

cmr=v1.8.2:ticket=4651:reviewer=bosilca

This commit was SVN r31836.

The following Trac tickets were found above:
  Ticket 4651 --> https://svn.open-mpi.org/trac/ompi/ticket/4651
2014-05-20 09:22:57 +00:00
George Bosilca
137874ec4d In fact btl_eager and btl_dma will just vanish upon destruction of the
bml_endpoint. No need to clean them bfore.

This commit was SVN r31835.
2014-05-20 08:53:22 +00:00
George Bosilca
85e3caaa17 Handle the del_procs correctly. The btl_send is the complete list
of existing BTL fo an endpoint, all the others are just partial list.
Thus, all the cleaning should first be done in the btl_send array,
and them in the other arrays (btl_eager and btl_rdma).

This commit was SVN r31834.
2014-05-20 08:46:57 +00:00
George Bosilca
1647664c43 Show the unreacheable message for the first unreacheable proc
and then stop.

This commit was SVN r31833.
2014-05-20 08:40:32 +00:00
Mike Dubman
6839f08159 OSHMEM: fix warning
fixed by Igor, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31832.
2014-05-20 05:52:31 +00:00
Gilles Gouaillardet
c496131eef Fixes *alltoall* collectives at top
- fix bugs
 - silent warnings

cmr=v1.8.2:ticket=4651:reviewer=bosilca

This commit was SVN r31831.

The following Trac tickets were found above:
  Ticket 4651 --> https://svn.open-mpi.org/trac/ompi/ticket/4651
2014-05-20 05:32:57 +00:00
Gilles Gouaillardet
ef4548a215 bml/r2 : fix mca_bml_r2_del_procs()
cmr=v1.8.2:reviewer=hjelmn:ticket=trac:4645

This commit was SVN r31830.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855

The following Trac tickets were found above:
  Ticket 4645 --> https://svn.open-mpi.org/trac/ompi/ticket/4645
2014-05-20 02:55:47 +00:00
Nathan Hjelm
27d3e1ca25 bml/r2: fix a problem identified by Gilles
This commit fixes two issues:

 - This intent of the code @ bml_r2.c:486 is to prevent calling the
   btl_del_procs more than once for a given proc. Gilles correctly
   identified there was a problem in this code but r31786 we not the
   correct fix.

 - Fix a segmentation fault in r2 finalize revealed by the fact we
   actually call del_procs now.

cmr=v1.8.2:reviewer=ggouaillardet:ticket=trac:4645

This commit was SVN r31829.

The following SVN revision numbers were found above:
  r2 --> open-mpi/ompi@58fdc18855
  r31786 --> open-mpi/ompi@fc96b0a7b8

The following Trac tickets were found above:
  Ticket 4645 --> https://svn.open-mpi.org/trac/ompi/ticket/4645
2014-05-19 20:22:34 +00:00
Nathan Hjelm
a1d5ce0893 pml/ob1: as per past RFC bring the inline send optimization to
MPI_Isend.

I filed an RFC for this optimization some time back. It is a
relatively simple optimization. If the data associated with an
MPI_Isend can be put on the wire without allocating an MPI_Request
then do so. In this case we can legally return omp_request_empty
which will correctly indicate that the request is complete and that is
was not cancelled (these are the only requirements on send requests).

cmr=v1.8.3:reviewer=bosilca

This commit was SVN r31828.
2014-05-19 19:34:59 +00:00
Mike Dubman
7c1eb0aad9 OSHMEM: fix for devices which do not support sharedmr
disqualify itself and use next allocator

fixed by Igor, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31823.
2014-05-19 17:59:49 +00:00
Nathan Hjelm
22e59b056a bcol/basesmuma: fix leak in basesmuma code
Basesmuma was vallocing space for control data then mmapping over that
data. Nothing in the code suggests any need for mmapping a specific
address so I did the following to remove the leak:

 - Removed the valloc of the buffer space

 - ftruncate the mmaped file to ensure there is sufficient memory to
   allocate space for the control data.

Ideally this code should be using opal/shmem but that is a larger
change. Keeping it simple for now.

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31822.
2014-05-19 15:21:58 +00:00
Nathan Hjelm
dedf6b377e btl/vader: don't leak registration cache items
Make sure to cleanup the registation cache when removing an
endpoint. This leak only affects systems with XPMEM installed.

Since this is in code specific to XPMEM not sure who could review so
sending it directly to the RM.

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31821.
2014-05-19 15:16:32 +00:00
Jeff Squyres
deea7b4d7d Add Artem to AUTHORS.
This commit was SVN r31820.
2014-05-19 14:16:24 +00:00
Mike Dubman
5d76d30550 OSHMEM: add missing prototypes and remove unused functions
fixed by Roman, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31819.
2014-05-19 13:34:53 +00:00
Mike Dubman
1f972737d4 OSHMEM: optimize print to spend less of formatting when not needed
fixed by Roman, reviewed by Miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31818.
2014-05-19 13:32:32 +00:00
Gilles Gouaillardet
2b89aac15b Fix a typo in MCA_PML_OB1_RECV_REQUEST_UNPACK
cmr=v1.8.2:reviewer=rhc

This commit was SVN r31817.
2014-05-19 11:00:13 +00:00
Gilles Gouaillardet
c82a6f5063 Fix a memory leak in mca/pml/bfo
Allocate the allocator in init rather than open

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31816.
2014-05-19 10:40:18 +00:00
Gilles Gouaillardet
8bafe06c57 Fixes *alltoall* collectives at top level
This commit :
 - Correctly retrieve the communicator size when
   checking memory and parameters
 - Ensure (sendtype,sendcount) and (recvtype,recvcount)
   matches and return with MPI_ERR_TRUNCATE otherwise
 - Return with MPI_SUCCESS without invoking the low level
   if no data is going to be transferred
 - Fixes trac:4506

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31815.

The following Trac tickets were found above:
  Ticket 4506 --> https://svn.open-mpi.org/trac/ompi/ticket/4506
2014-05-19 07:46:07 +00:00
Mike Dubman
d531a2ccad OSHMEM: Fix deadlock for collect operation using various data sizes.
Deadlock when using the shmem_collect32()/shmem_collect64() routines and any of the non-root PEs pass 0 as the number of elements.
Algorithm in _algorithm_central_collector() does use 0 as a special value, and thus does not break out of the loop.

fixed by IgorI, reviewed by MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31814.
2014-05-19 06:17:53 +00:00
MPI Team
772bbc2e3d Update git/hg ignore files
This commit was SVN r31813.
2014-05-19 05:00:28 +00:00
Ralph Castain
63d7ba6b25 Missed one instance of top_builddir
This commit was SVN r31812.
2014-05-19 04:18:29 +00:00
Ralph Castain
6f1320d5cd Cleanup the mess from r31810 - no way that could compile or avoid breaking the trunk. The Makefile's had to be added to oshmem_config_files.m4, and the Makefile.am's had not been updated to the new srcdir/builddir conventions. Also add svn:ignores
This commit was SVN r31811.

The following SVN revision numbers were found above:
  r31810 --> open-mpi/ompi@83bdebbf81
2014-05-19 04:14:54 +00:00
Oscar Vega-Gisbert
83bdebbf81 Java bindings for OSHMEM.
This commit was SVN r31810.
2014-05-18 21:48:09 +00:00
Mike Dubman
cadc1485ff HCOLL: register memory release hook to avoid races
fixed by Devender, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31809.
2014-05-17 19:49:43 +00:00
Mike Dubman
747ad77a97 OSHMEM: refactor to fully comply to the OpenSHMEM spec and fix some proto
fixed by Roman, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31808.
2014-05-17 19:47:30 +00:00
Ralph Castain
61fba04a0c Remove undeclared variable
This commit was SVN r31807.
2014-05-17 04:09:05 +00:00
Jeff Squyres
025e4a852b pml_ob1: ensure to have enough space for send/recvreq on stack
r30343 introduced the optimization of putting the OB1 sendreq and
recvreq on the stack for blocking sends and receives.  However, the
requests did not contain enough storage for the data that is normally
immediately ''after'' the request (e.g., BTL data).

This commit changes these requests to be pointers and to use alloca()
to get enough total space for the OB1 request and all the associated
data.

The change is smaller than it looks; most of it is just changing from
"foo.bar" to "foo->bar" notation (etc.).

Submitted by Jeff, reviewed by Nathan.  But we want George to look at
this (and get a little soak time on the trunk) before moving to v1.8.

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31806.

The following SVN revision numbers were found above:
  r30343 --> open-mpi/ompi@2b57f4227e
2014-05-17 01:05:59 +00:00
George Bosilca
750c6c7861 Update the UTK copyright on the topology related files.
This commit was SVN r31805.
2014-05-16 22:23:52 +00:00
Gilles Gouaillardet
96ae38823d Fix a memory leak in ompi_osc_base_finalize()
cmr=v1.8.2:reviewer=rhc

This commit was SVN r31788.
2014-05-16 05:25:24 +00:00
Gilles Gouaillardet
fc96b0a7b8 Fix a typo in mca_bml_r2_del_procs()
Use bml_endpoint->btl_eager instead of bml_endpoint->btl_send.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31786.
2014-05-16 04:43:18 +00:00
Nathan Hjelm
e97e4cf924 Add missing include.
cmr=v1.8.2:ticket=trac:4639

This commit was SVN r31784.

The following Trac tickets were found above:
  Ticket 4639 --> https://svn.open-mpi.org/trac/ompi/ticket/4639
2014-05-15 19:52:06 +00:00