Ralph Castain
4a55fba414
Fix registration of error handlers thru the pmix120 component. A thread-shift operation was hanging on the sync_event_base, which made it dependent on someone calling opal_progress. Unfortunately, a process in "sleep" or spinning outside the MPI library won't do that, and so we never complete errhandler registration.
2016-03-02 15:01:01 -08:00
Ralph Castain
f0680008d1
Add test file for singularity
2016-03-02 05:40:41 -08:00
Ralph Castain
06e811c5a6
Properly use the OPAL_MCA_PREFIX in orte_submit
2016-03-01 18:16:40 -08:00
Ralph Castain
1b81d90eaa
Minor cleanups required for orte-dvm operation
2016-03-01 18:12:53 -08:00
Ralph Castain
c9f7bb6751
Add the include file to all the schizo components
2016-03-01 13:18:23 -08:00
Ralph Castain
625083fe18
Add include file
2016-03-01 13:04:20 -08:00
rhc54
9df73568f4
Merge pull request #1411 from rhc54/topic/pmixdefault
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Fix a number of issues, some of which have lingered for a long time
2016-03-01 11:08:28 -08:00
Ralph Castain
011403c04a
Fix a number of issues, some of which have lingered for a long time:
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* provide a more reliable way of determining that a process is a singleton by leveraging the schizo framework. Add new components for slurm, alps, and orte to detect when we are in a managed environment, and if we have been launched by mpirun or a native launcher. Set the correct envars to control ess and pmix selection in each case.
* change the relative priority of the pmix120 and pmix112 components to make pmix120 the default
* fix singleton comm-spawn by correctly setting the num_apps field of the orte_job_t created by the daemon - this fixes a segfault in register_nspace on newly created daemons
* ensure orterun doesn't propagate any ess or pmix directives in its environment
* Cleanup a few valgrind issues and memory leaks
* Fix a race condition that prevented the client from completing notification registrations (missing thread shift)
* Ensure the shizo/alps component detects launch by mpirun
2016-03-01 06:53:00 -08:00
Gilles Gouaillardet
67e45028df
Merge pull request #1414 from jsquyres/pr/egrep-for-examples-makefile
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examples: update ompi_info bindings checks
2016-03-01 11:55:49 +09:00
Gilles Gouaillardet
8aff67c399
topo/base: correctly support MPI_UNWEIGHTED in mca_topo_base_dist_graph_neighbors()
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Thanks Jun Kudo for the bug report.
2016-03-01 10:28:28 +09:00
Gilles Gouaillardet
e5d6b97db4
opal: fix pragma for GCC 6 and later
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GCC 6 and later should ignore -Wpedantic instead of -pedantic
2016-02-29 13:56:22 +09:00
Jeff Squyres
677a31bc9f
examples: update ompi_info bindings checks
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Use "-q" option to grep/egrep to suppress output (we only need the
exit status). Also, use egrep for the "use mpi" check, because some
versions of ompi_info say 'bindings:use_mpi:yes' and others say
'bindings:use_mpi:"yes' (i.e., with the double quote). This regexp
will work with both versions.
2016-02-28 17:19:54 -08:00
Jeff Squyres
20fade1345
examples: fix check for Fortran "use mpi" bindings
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The output from "ompi_info --parsable" for the Fortran "use mpi"
bindings apparently has changed over time. It is now:
"yes (full: ignore TKR)"
or "yes (limited: overloading)"
(including the quotes)
So update the test in examples/Makefile to also look for the quote.
2016-02-28 16:30:09 -08:00
rhc54
78a1fd5d54
Merge pull request #1413 from rhc54/topic/iof
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Fix a segfault that can occur when very short-lived, non-ORTE procs are run
2016-02-28 13:55:15 -08:00
Ralph Castain
263b0c95a8
Fix a segfault that can occur when very short-lived, non-ORTE procs are run
2016-02-28 12:30:20 -08:00
Jeff Squyres
89f225ea7f
Merge pull request #1410 from jsquyres/pr/cxx11-has-jumped-the-shark
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cxx: "rank" is now a function in C++11
2016-02-27 09:37:13 -05:00
Jeff Squyres
89d0a033b7
cxx: "rank" is now a function in C++11
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Use "myrank" instead (I tried using ::rank, but had varied
success... so I just renamed the variable).
2016-02-25 15:56:08 -06:00
rhc54
6ae75f007a
Merge pull request #1409 from rhc54/topic/singleton
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Provide an option to allow isolated singletons
2016-02-25 15:36:43 -06:00
Ralph Castain
cdb494566d
Provide an option to allow isolated singletons
2016-02-25 11:33:26 -06:00
George Bosilca
dbe93b0b19
Use mca_bml_base_get_endpoint
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Correctly use mca_bml_base_get_endpoint instead of accessing the
endpoint directly.
2016-02-25 11:00:30 -06:00
Sylvain Jeaugey
5f32f49eb8
pml/ob1: Fix segmentation fault on CUDA path.
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Fix segfault due to mca_pml_ob1_cuda_need_buffers not handling the case of the
endpoint not being there. Calling mca_bml_get_endpoint() seems to fix the problem.
Fixes open-mpi/ompi#1402
2016-02-24 21:32:25 -08:00
rhc54
026cb37c4e
Merge pull request #1400 from rhc54/topic/config
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Adjust the pmix external component configure error messages
2016-02-24 14:22:59 -06:00
Ralph Castain
d28d3ee901
Make the error message on external pmix library a little clearer by separating out the libevent from the libhwloc checks
2016-02-24 11:20:25 -06:00
Ralph Castain
e8d347d7bd
Add missing includes
2016-02-24 08:56:02 -06:00
Jeff Squyres
be22971c3a
Merge pull request #1398 from jsquyres/pr/test-lib-name-cleanups
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tests: fix library name
2016-02-23 21:31:39 -06:00
Gilles Gouaillardet
477991b5aa
btl/openib: fix abstraction violation and use opal_memory->memoryc_set_alignment
2016-02-24 09:50:13 +09:00
Gilles Gouaillardet
d8482ce6f4
opal/mca/memory: add a memoryc_set_alignment subroutine to the OPAL memory MCA
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this commit also (partially) reverts :
- open-mpi/ompi@7de01b347c
- open-mpi/ompi@8b05f308f9
2016-02-24 09:50:12 +09:00
Jeff Squyres
1340d51ddd
tests: fix library name
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Use @OPAL_LIB_PREFIX@ as appropriate in the library that we link against.
2016-02-23 16:22:59 -08:00
Edgar Gabriel
2c4b93f72b
Merge pull request #1395 from edgargabriel/pr/fcoll-static-large-ops-fix
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fix the data size counter for large ops for the static fcoll component
2016-02-23 10:26:16 -06:00
Edgar Gabriel
45003ef78d
fix the data size counter for large ops for the static fcoll component
2016-02-23 08:33:50 -06:00
George Bosilca
d6fb56af29
Use the correct printf conversion specifier.
2016-02-23 01:26:27 -06:00
Gilles Gouaillardet
308bbcbad1
ompi/dpm: retrieves OPAL_PMIX_ARCH in heterogeneous mode
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also remove code duplication by using ompi_proc_complete_init_single()
Thanks Siegmar Gross for reporting this issue, and Ralph for the guidance.
2016-02-22 11:01:06 +09:00
Gilles Gouaillardet
a4aa4c9571
ompi_proc_complete_init_single: make the subroutine public
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and accept a proc from a different job
2016-02-22 11:01:06 +09:00
rhc54
1df4457af2
Merge pull request #1392 from rhc54/topic/dvm
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Tools don't create the orte_job_data table, so don't remove jobs from it
2016-02-21 17:42:48 -08:00
Ralph Castain
77f800b7e8
Tools don't create the orte_job_data table, so don't remove jobs from it
2016-02-21 16:29:00 -08:00
Ralph Castain
64b7728f33
Fix typo - do not look at daemon job when considering completion of launch
2016-02-21 14:44:51 -08:00
rhc54
b499d4ba2a
Merge pull request #1391 from rhc54/topic/dvm
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Convert the orte_job_data pointer array to a hash table so it doesn't…
2016-02-21 13:07:59 -08:00
Ralph Castain
d653cf2847
Convert the orte_job_data pointer array to a hash table so it doesn't grow forever as we run lots and lots of jobs in the persistent DVM.
2016-02-21 11:55:49 -08:00
Ralph Castain
309e23ab3a
Fix minor typo
2016-02-20 01:33:10 -08:00
yohann
59b6d041f8
mtl/ofi: Check allocated pointer.
2016-02-19 16:59:47 -08:00
yohann
bd47062764
mtl/ofi: Fix error handling.
2016-02-19 16:58:41 -08:00
yohann
404987e9b3
mtl/ofi: Fix mismatching types.
2016-02-19 16:57:26 -08:00
yohann
3ad59435ce
mtl/ofi: Prevent possible memory leak.
2016-02-19 16:57:02 -08:00
Ralph Castain
8c92a179c0
Minor memory leak
2016-02-19 15:05:39 -08:00
rhc54
1f7e2d7d41
Merge pull request #1388 from rhc54/topic/iof
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Cleanup the output-filename options so they work as expected.
2016-02-19 13:56:05 -08:00
Ralph Castain
0c72ba89b9
Cleanup the output-filename options so they work as expected. Have the remote nodes output locally to the files instead of sending it all back to the HNP.
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Fix Solaris issues by renaming struct field
2016-02-19 12:41:46 -08:00
Edgar Gabriel
b33db517c1
Merge pull request #1387 from edgargabriel/dynamic_gen2-overlap
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Updates to the dynamic_gen2 component
2016-02-19 12:00:29 -06:00
Edgar Gabriel
92d1b99468
optimize the shuffle step:
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1. use communicator collectives if possible for performance reasons
2. combined multiple allgathers into a single one
2016-02-19 11:04:04 -06:00
Edgar Gabriel
e63836c653
clean up the mca parameter handling of the component. Add new parameters for number of sub groups and write chunk size. This will allow to perform a systematic parameter study.
2016-02-19 10:15:28 -06:00
Edgar Gabriel
4f400314e0
add the dynamic_gen2 component into the fcoll selection table.
2016-02-19 09:32:54 -06:00