ports/openmpi
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Geoff Paulsen
4917e44a7d Merge pull request #2832 from jjhursey/topic/ibm/osc-base-dt-abort 
osc/base: Detect unsupported data types and abort
 2017-02-05 04:26:04 -06:00
Howard Pritchard
f4ad119693 Merge pull request #2914 from hppritcha/topic/nbc_compiler_warning 
swat some compiler warnings
 2017-02-04 11:56:52 -05:00
Howard Pritchard
acaecb2448 swat some compiler warnings 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-02-03 08:28:15 -07:00
Ralph Castain
ead453ee8e Merge pull request #2911 from rhc54/topic/retry 
For performance, try to send the oob/tcp message a few times before dropping back into the event library
 2017-02-02 12:57:18 -08:00
Ralph Castain
b661275dba For performance, try to send the oob/tcp message a few times before dropping back into the event library 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-02-02 06:44:15 -08:00
Gilles Gouaillardet
e879d2910a coll/tuned: make coll_tuned_gather_algorithms MCA settable 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-02-02 11:00:38 +09:00
Ralph Castain
50ca9fb66b Merge pull request #2893 from rhc54/topic/sim 
Cleanup the ras simulator capability, and the relay route thru grpcomm
 2017-02-01 16:17:40 -08:00
Ralph Castain
230d15f0d9 Cleanup the ras simulator capability, and the relay route thru grpcomm 
direct. Don't resend wireup info if nothing has changed

Fix release of buffer

Correct the unpacking order

Fix the DVM - now minimized data transfer to it

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-02-01 15:01:58 -08:00
Nathan Hjelm
362ac8b87e osc/pt2pt: fix threading issues 
This commit fixes a number of threading issues discovered in
osc/pt2pt. This includes:

 - Lock the synchronization object not the module in osc_pt2pt_start.
   This fixes a race between the start function and processing post
   messages.

 - Always lock before calling cond_broadcast. Fixes a race between
   the waiting thread and signaling thread.

 - Make all atomically updated values volatile.

 - Make the module lock recursive to protect against some deadlock
   conditions. Will roll this back once the locks have been
   re-designed.

 - Mark incoming complete *after* completing an accumulate not
   before. This was causing an incorrect answer under certain
   conditions.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-02-01 10:33:01 -07:00
Ralph Castain
a9d836bae3 Merge pull request #2890 from rhc54/topic/alps 
Correct the path to the ORTE data dir - allows master to be built with --no-ompi
 2017-02-01 07:47:33 -08:00
Ralph Castain
8bf3ac828c Correct the path to the ORTE data dir - allows master to be built with --no-ompi 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-02-01 07:30:18 -07:00
Howard Pritchard
e62fca896f Merge pull request #2889 from hppritcha/topic/fix_ess_alps_makefie 
ess/alps: fix problem in makefile
 2017-02-01 05:46:51 -05:00
Howard Pritchard
db4039f565 ess/alps: fix problem in makefile 
./autogen.pl --no-ompi doesn't work without this
fix when alps can be configured.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-01-31 21:56:16 -06:00
Gilles Gouaillardet
02558134ef coll/base: remove unused local variable 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-02-01 11:54:17 +09:00
Gilles Gouaillardet
ad44ecb2ba pml/base: initialize global variables 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-02-01 11:49:47 +09:00
bosilca
c331e6794c Allow all tuned MCA parameters to be modified programatically. (#2829) 
Fix a comment in the MCA header.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
 2017-01-31 21:47:36 -05:00
Ralph Castain
6cb484a3cb Merge pull request #2887 from rhc54/topic/update 
Update to latest PMIx master
 2017-01-31 11:05:37 -08:00
Jeff Squyres
45b791542c Merge pull request #2809 from jjhursey/fix/ibm/opal-verbose 
opal/output: Make sure verbose gets updated when id 0 gets updated.
 2017-01-31 12:18:38 -05:00
Josh Hursey
5fcd69da52 Merge pull request #2831 from jjhursey/topic/ibm/pml-bsend 
pml/base: Expose some bsend varaibles so PMLs may reference them
 2017-01-31 10:31:42 -06:00
Josh Hursey
31faf0a950 Merge pull request #2861 from jjhursey/topic/ibm/master/orted-timeout-improv 
orterun: Add parameter to control when we give up on stack traces
 2017-01-31 10:25:57 -06:00
Ralph Castain
edcfdf2365 Update to latest PMIx master 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-31 08:01:37 -08:00
Yossi
0b822522fb Merge pull request #2883 from alex-mikheev/topic/oshmem_mem_prefetch 
oshmem: mem use hook: apply code review fixes
 2017-01-30 12:39:04 +02:00
Alex Mikheev
ea3ea4835b oshmem: mem use hook: apply code review fixes 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
(cherry picked from commit a422154a141f0be5b92d2b6c26d7b2b4176dfe18)
 2017-01-30 11:30:20 +02:00
Gilles Gouaillardet
6c9ba35d2d Merge pull request #2880 from ggouaillardet/topic/red_sched_chain 
coll/libnbc: fix the red_schain algo of ireduce with MPI_IN_PLACE
 2017-01-30 15:08:03 +09:00
Gilles Gouaillardet
9bcadbd51b coll/libnbc: fix the red_schain algo of ireduce with MPI_IN_PLACE 
this fixes a regression introduced in open-mpi/ompi@045d0c5f4c

Fixes open-mpi/ompi#2879

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 14:19:45 +09:00
Gilles Gouaillardet
b12ab2b4f2 Merge pull request #2857 from ggouaillardet/topic/pmix_ext11 
pmix/ext11 fixes, plugs and rename
 2017-01-30 11:44:07 +09:00
Gilles Gouaillardet
b078e57e73 pmix/ext1x: fix misc memory leaks in namespace registration 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 10:52:42 +09:00
Gilles Gouaillardet
f51fc293a2 ext1x/pmix1x_client: plug misc memory leaks 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 10:52:42 +09:00
Gilles Gouaillardet
022cca79ea pmix/ext1x: plug a memory leak in opal_lkupcbfunc() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 10:52:36 +09:00
Gilles Gouaillardet
f485d12a82 pmix: rename the ext11 component into ext1x 
also use the same naming scheme thann pmix/ext2x

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 10:52:35 +09:00
Gilles Gouaillardet
dccb1899e6 pmix/ext11: correctly use PMIx_server_register_nspace() 
PMIx_server_register_nspace() is an asynchronous operation, so
the pmix glue wait for it completes before returning.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 09:23:19 +09:00
Gilles Gouaillardet
6955e1e25c pmix/ext11: fix compilation 
the argc field from the opal_pmix_app_t struct was removed,
so adjust the pmix/ext11 glue accordingly.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-01-30 09:23:18 +09:00
Ralph Castain
7ab26a4946 Merge pull request #2878 from rhc54/topic/scaling 
Add new platform files. Modify scaling.pl to support ppn option
 2017-01-29 15:57:04 -08:00
Ralph Castain
28abe78f8c Add new platform files. Modify scaling.pl to support ppn option 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-29 15:55:49 -08:00
Mike Dubman
048d47df48 Merge pull request #2874 from yosefe/topic/pml-yalla-fix-dt-leak 
yalla: fix memory leak with blocking non-contig send.
 2017-01-29 19:36:37 +02:00
Yossi Itigin
13c3bf0dd7 yalla: fix memory leak with blocking non-contig send. 
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
 2017-01-29 18:51:43 +02:00
Yossi
149ecef289 Merge pull request #2845 from alex-mikheev/topic/oshmem_mem_prefetch 
oshmem: spml: add memory allocation hook
 2017-01-29 14:15:01 +02:00
Alex Mikheev
9da9e6260d
oshmem: spml ucx: on error print ucx error string 
Signed-off-by: Alex Mikheev <alexm@mellanox.com>
 2017-01-29 10:28:24 +02:00
Ralph Castain
2b2ea2fed2 Merge pull request #2869 from rhc54/topic/staticports 
Fix static port and partial allocation operations
 2017-01-28 11:03:11 -08:00
Ralph Castain
b59ae14a2a Fix static port and partial allocation operations 
Fix static port wireup by recording the TCP port mpirun is using and correctly passing the regex of hosts to the daemons. Do a better job of closing sockets on failed connection attempts. Correctly identify the remote host in the associated error message.

Fix partial allocation operations by not attempting to set #slots on nodes that were not used, and thus don't have a daemon or topology assigned to them

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-28 10:09:44 -08:00
Howard Pritchard
47450eb282 Merge pull request #2868 from hppritcha/topic/typo_fix 
mca help: fix typo found by user
 2017-01-28 09:53:47 -07:00
Howard Pritchard
fca45a2742 mca help: fix typo found by user 
Fix typo found by @pozdneev

Fixes #2821

bot:notest

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-01-28 09:37:43 -07:00
Ralph Castain
06ef1aafb1 Merge pull request #2867 from rhc54/topic/spawn 
Cleanup a typo that can cause a segfault
 2017-01-27 17:45:25 -08:00
Ralph Castain
a865d4060c Merge pull request #2866 from rhc54/topic/qrsh 
Minor change to allow qrsh to tree spawn, if supported
 2017-01-27 17:27:15 -08:00
Ralph Castain
3302864a7d Cleanup a typo that can cause a segfault - use a local variable name different than the one passed into the function 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-27 16:49:25 -08:00
Ralph Castain
c803af5d3d Minor change to allow qrsh to tree spawn, if supported 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-27 16:34:08 -08:00
Ralph Castain
410befd255 Merge pull request #2864 from rhc54/topic/rsh 
Repair rsh/ssh tree spawn
 2017-01-27 16:31:35 -08:00
Ralph Castain
3440b46e5e Merge pull request #2820 from rhc54/topic/async 
Per f2f meeting: if async modex is given, default to no MPI init barr…
 2017-01-27 15:43:43 -08:00
Ralph Castain
7c795f4416 If the HNP is going to request topology info, it cannot do so via a routed OOB message as the intervening daemons may not be ready. So disable routing until the VM is ready, and have daemons start routing as they receive the xcast launch msg (which includes the data they need to talk to their peers). 
Do a little optimization and minimize recomputation of the routing plan.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-27 15:37:16 -08:00
Ralph Castain
d672fad849 Repair rsh/ssh tree spawn 
Repair rsh/ssh tree spawn by unpacking and updating the nidmap in remote_spawn.

Add more specific error messages so the cause of a messaging problem is a little clearer. Remove some stale code. Ensure we stop trying to send a message after a few times.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-01-27 11:35:00 -08:00