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Граф коммитов

20344 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
3ed4aaea99 man pages: Add MPI_Type_f2c.3 file into the tarball
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31934.
2014-06-03 18:28:50 +00:00
Jeff Squyres
87f9f6815f use-mpi-tkr: fix ierr->ierror param names
Issue noted by Walter Spector on the user's mailing list.

Throwing to Craig Rasmussen for review.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31933.
2014-06-03 15:26:02 +00:00
Jeff Squyres
82d4e33510 usnic: let connectivity client timeout if agent never appears
This would be a really, really weird case if it ever happens (i.e.,
you have usnics but the agent process failed somewhere in MPI_INIT
such that the agent never appears), but having an infinite loop
doesn't seem like a good idea.

(does not need to go to v1.8 because v1.8 still uses RML for
communication for the connectivity checker)

This commit was SVN r31932.
2014-06-02 18:14:35 +00:00
Jeff Squyres
af04d60098 usnic: do not enable the connecitivty agent if there are no usnics
Reviewed by Dave Goodell.

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31931.
2014-06-02 18:09:55 +00:00
Ralph Castain
5668f085a3 Silence some useless warnings, and fix a missed updated in the tm plm
This commit was SVN r31930.
2014-06-02 17:57:56 +00:00
Ralph Castain
742c0d2284 Fix typo that would cause a segfault if orte_startup_timeout was set
This commit was SVN r31929.
2014-06-02 15:59:18 +00:00
Ralph Castain
7df500ecf5 Break the loop caused by retrying to send a message to a hop that is unknown by the TCP oob component. We attempt to provide a way for other components to try, but need to mark that the TCP component is not able to reach that process so the OOB base will know to give up.
This commit was SVN r31928.
2014-06-02 15:00:33 +00:00
Ralph Castain
03234f2a33 Revert r31926 and replace it with a more complete checking of availability and accessibility of the required freq control paths.
This commit was SVN r31927.

The following SVN revision numbers were found above:
  r31926 --> open-mpi/ompi@9779084352
2014-06-02 14:34:00 +00:00
Gilles Gouaillardet
9779084352 orte_rtc_base_select: skip a RTC module if it has a zero priority
This commit was SVN r31926.
2014-06-02 07:16:41 +00:00
MPI Team
b28871df4c Update git/hg ignore files
This commit was SVN r31925.
2014-06-02 05:00:30 +00:00
Gilles Gouaillardet
1a17a2a960 Fixes MEMCHECKER vs MPI_IN_PLACE in *alltoall*
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31924.
2014-06-02 04:43:48 +00:00
Gilles Gouaillardet
c930e44bad Fetch info from both opal_dstore_nonpeer and opal_dstore_peer
This conservative fixes tries to fetch info from both
opal_dstore_nonpeer and opal_dstore_peer.
This is required is task A spawns tasks B and C.
B was previously unable to find info from C, this caused locality
info not being set and a hang in coll/ml init.

no CMR is required since v1.8 uses a unique dstore

This commit was SVN r31923.
2014-06-02 02:34:30 +00:00
Gilles Gouaillardet
d1bcd103ac btl/openib : correctly handle eager rdma buffers in mca_btl_openib_del_procs
if eager rdma is used, endpoint reference_count is greater than one.
this commit is a temporary fix that OBJ_RELEASE the endpoint as much as needed.
thought this is likely correct, it can be suboptimal and hence needs to be reviewed

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r31922.
2014-06-02 02:23:52 +00:00
Ralph Castain
65a35d92ef Cleanup compile issues - missing updates to some plm components and the slurm ras component
This commit was SVN r31921.
2014-06-01 17:59:06 +00:00
Ralph Castain
4b0c3dcd29 Update ignores
This commit was SVN r31920.
2014-06-01 17:58:28 +00:00
Ralph Castain
2c3d07db24 Cleanup the test so it is MPI correct
This commit was SVN r31919.
2014-06-01 17:57:36 +00:00
Ralph Castain
2f67a83e81 Set ignores
This commit was SVN r31918.
2014-06-01 17:56:38 +00:00
Ralph Castain
9305756276 Per RFC:
http://www.open-mpi.org/community/lists/devel/2014/05/14838.php

Remove stale component

This commit was SVN r31917.
2014-06-01 17:03:03 +00:00
Ralph Castain
8736a1c138 Per RFC:
http://www.open-mpi.org/community/lists/devel/2014/05/14822.php

Revamp the ORTE global data structures to reduce memory footprint and add new features. Add ability to control/set cpu frequency, though this can only be done if the sys admin has setup the system to support it (or you run as root).

This commit was SVN r31916.
2014-06-01 16:14:10 +00:00
Ralph Castain
cf2c7381d0 Replace the PML barrier with an RTE barrier for now until we can come up with a better solution for connectionless BTLs.
Refs trac:4643

This commit was SVN r31915.

The following Trac tickets were found above:
  Ticket 4643 --> https://svn.open-mpi.org/trac/ompi/ticket/4643
2014-06-01 16:08:56 +00:00
Oscar Vega-Gisbert
cc219218a7 Java: update javadoc's install locations
This commit was SVN r31914.
2014-06-01 15:40:14 +00:00
Oscar Vega-Gisbert
86a89c9324 Java-oshmem: update examples
This commit was SVN r31913.
2014-06-01 15:09:30 +00:00
Oscar Vega-Gisbert
748d02e963 Java-oshmem: remove some 'len' parameters, new 'slice' methods, new class PSync
This commit was SVN r31912.
2014-06-01 15:06:35 +00:00
Ralph Castain
304fe06e1b Don't spew warnings if PMI_FD isn't present - it isn't an error.
This commit was SVN r31911.
2014-06-01 13:40:12 +00:00
Alina Sklarevich
f8a664f5ec MXM: generate the jobid only for MXM versions under v2.0.
reviewed by miked
cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31910.
2014-06-01 13:29:24 +00:00
Mike Dubman
e85e0e926d PMI: hotfix for PMI1 support
Based on thread: http://www.open-mpi.org/community/lists/devel/2014/06/index.php

This commit was SVN r31909.
2014-06-01 06:43:05 +00:00
Ralph Castain
1107f9099e Per the RFC issued here:
http://www.open-mpi.org/community/lists/devel/2014/05/14827.php

Refactor PMI support

This commit was SVN r31907.
2014-06-01 04:28:17 +00:00
Jeff Squyres
a1485569b9 If we don't find an OPAL dstore key (via modex), it's not an error --
we just didn't find it.  So don't ORTE_ERROR_LOG it.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31906.
2014-05-31 12:02:28 +00:00
Jeff Squyres
92ecb90a78 Use the C compiler to compile C codes, not the Fortran compiler
This commit was SVN r31905.
2014-05-30 10:39:54 +00:00
George Bosilca
6290f6cc58 Correctly deal with partially converted datatypes both
during the unpack and during the positioning.

Fixes trac:4610.

This commit was SVN r31904.

The following Trac tickets were found above:
  Ticket 4610 --> https://svn.open-mpi.org/trac/ompi/ticket/4610
2014-05-29 21:53:44 +00:00
MPI Team
843bc4f024 Update git/hg ignore files
This commit was SVN r31903.
2014-05-29 05:00:31 +00:00
Rolf vandeVaart
04e0d43371 Update ignore property.
This commit was SVN r31902.
2014-05-28 16:16:03 +00:00
Rolf vandeVaart
489664b4a9 Remove debug code.
This commit was SVN r31901.
2014-05-28 16:06:16 +00:00
Rolf vandeVaart
570e313c9b Add collective module to handle CUDA aware buffers and reductions. Per RFC sent last week.
Reviewed by bosilca.

This commit was SVN r31894.
2014-05-27 21:24:43 +00:00
Nathan Hjelm
2614dfc4bf bcol/basesmuma: fix remaining memory leaks in basesmuma
We were still leaking 1) file descriptors for data files, and 2) some
control files. I fixed both of these leaks and everything is looking
good. This should fix the bug where we are running out of file
descriptors when running the loop_spawn test. I also too the
opportunity to refactor the code a bit to make the mapping/unmapping
simpler. This should help avoid these sorts of issues in the future.

Depends on #4678

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31893.
2014-05-27 18:40:41 +00:00
Ralph Castain
f840013b41 Correct typo spotted by Gilles
This commit was SVN r31892.
2014-05-27 17:14:01 +00:00
Mike Dubman
7b05b5c4c2 HCOLL: use proper parameter in progress unregister
fixed by Nadezhda, reviewed by Elena/MikeD

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31891.
2014-05-26 09:03:30 +00:00
Gilles Gouaillardet
d04db1e213 Fix mmap flags in bcol_basesmuma_smcm_reg_mmap
if in_ptr is NULL, the MAP_FIXED flag cannot be passed to mmap

this caused a hang in topology/cart and topology/sub from ibm
test suite on trunk.

cmr=v1.8.2:reviewer=hjelmn

This commit was SVN r31890.
2014-05-26 07:18:31 +00:00
Gilles Gouaillardet
75616320b5 remove all message output from ompi/communicator/comm_helpers.c
Thanks George for pointing out.

cmr=v1.8.2:reviewer=bosilca:ticket=4676

This commit was SVN r31889.

The following Trac tickets were found above:
  Ticket 4676 --> https://svn.open-mpi.org/trac/ompi/ticket/4676
2014-05-26 01:54:24 +00:00
Gilles Gouaillardet
40f3b849eb Fix argument checks for [i]neighbor_alltoall{v|w}
This fixes a bug introduced in :
 - r31815 (trunk) 
 - r31853 (v1.8 branch)

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31888.

The following SVN revision numbers were found above:
  r31815 --> open-mpi/ompi@8bafe06c57
  r31853 --> open-mpi/ompi@bff944d766
2014-05-23 08:19:17 +00:00
Gilles Gouaillardet
de15b623b5 do not incrementing/decrementing the opal_progress_event_state.
Per Ralph :
"I noticed that we are incrementing and decrementing the opal_progress_event state.
However, this no longer has any impact whatsoever on the RML as that is running in
the independent ORTE event thread. So all this actually does is impact the MPI layer
by adding an unnecessary overhead."

Thanks Ralph for pointing this :-)

cmr=v1.8.2:reviewer=rhc:ticket=4671

This commit was SVN r31887.

The following Trac tickets were found above:
  Ticket 4671 --> https://svn.open-mpi.org/trac/ompi/ticket/4671
2014-05-23 05:02:31 +00:00
Gilles Gouaillardet
4843909a6b correctly allocate cart in mca_topo_base_cart_sub(...)
since r31716 mca_topo_base_comm_cart_2_2_0_t is an object
and must be allocated/freed with OBJ_NEW/OBJ_RELEASE.

this fixes topology/cart_sub_zero from the ibm test suite.

v1.8 does not use objects, so no cmr for this branch

This commit was SVN r31883.

The following SVN revision numbers were found above:
  r31716 --> open-mpi/ompi@e3df77548d
2014-05-23 03:07:46 +00:00
Nathan Hjelm
041b72b0cc plm/alps: better workaround for the noisy cray pmi implementation
This commit is a slightly better workaround to prevent mesages of
the form:
[unset]:_pmi_alps_get_apid:alps_app_lli_put_request failed
[unset]:_pmi_alps_get_appLayout:pmi_alps_get_apid returned with error: Bad file descriptor

It works by completely disabling PMI in the application process when using
mpirun. This should not be an issue for any apps.

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31882.
2014-05-22 16:04:36 +00:00
Mike Dubman
f2b4e5b156 OSHMEM: add compat to prev mxm version
fixed by ROman, reviewed by MikeD

Refs: #4672

This commit was SVN r31881.
2014-05-22 10:03:02 +00:00
Mike Dubman
291bcaddf1 OSHMEM: fix compiler warnings
fixed by Roman, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31880.
2014-05-22 06:51:28 +00:00
George Bosilca
ba211d97ef Remove a double const warning.
This commit was SVN r31879.
2014-05-22 06:09:45 +00:00
Mike Dubman
d9d5dd701b OSHMEM: fix - use real mkey for atomics for rc/dc
fixed by Roman, reviewed by Vasily

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31878.
2014-05-22 05:58:22 +00:00
George Bosilca
66e91f3797 Remove a warning on p.
And correctly handle the reference count from OBJ_NEW in the error
path (thanks Gilles for noticing).

This commit was SVN r31877.
2014-05-22 05:57:21 +00:00
George Bosilca
6ed1ac032e Release the buffer in all error cases and add small code cleanups.
This commit was SVN r31876.
2014-05-22 05:17:35 +00:00
MPI Team
ea159cae0b Update git/hg ignore files
This commit was SVN r31875.
2014-05-22 05:00:26 +00:00