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4144 Коммитов

Автор SHA1 Сообщение Дата
Vishwanath Venkatesan
3d98a1a01e Adding memkind component to use MPI_Alloc_mem through memkind 2016-03-14 10:50:41 -06:00
Nathan Hjelm
d4afb16f5a opal: rework mpool and rcache frameworks
This commit rewrites both the mpool and rcache frameworks. Summary of
changes:

 - Before this change a significant portion of the rcache
   functionality lived in mpool components. This meant that it was
   impossible to add a new memory pool to use with rdma networks
   (ugni, openib, etc) without duplicating the functionality of an
   existing mpool component. All the registration functionality has
   been removed from the mpool and placed in the rcache framework.

 - All registration cache mpools components (udreg, grdma, gpusm,
   rgpusm) have been changed to rcache components. rcaches are
   allocated and released in the same way mpool components were.

 - It is now valid to pass NULL as the resources argument when
   creating an rcache. At this time the gpusm and rgpusm components
   support this. All other rcache components require non-NULL
   resources.

 - A new mpool component has been added: hugepage. This component
   supports huge page allocations on linux.

 - Memory pools are now allocated using "hints". Each mpool component
   is queried with the hints and returns a priority. The current hints
   supported are NULL (uses posix_memalign/malloc), page_size=x (huge
   page mpool), and mpool=x.

 - The sm mpool has been moved to common/sm. This reflects that the sm
   mpool is specialized and not meant for any general
   allocations. This mpool may be moved back into the mpool framework
   if there is any objection.

 - The opal_free_list_init arguments have been updated. The unused0
   argument is not used to pass in the registration cache module. The
   mpool registration flags are now rcache registration flags.

 - All components have been updated to make use of the new framework
   interfaces.

As this commit makes significant changes to both the mpool and rcache
frameworks both versions have been bumped to 3.0.0.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-14 10:50:41 -06:00
Jeff Squyres
48c650c47a configury: minor updates to config summary output 2016-03-10 13:02:52 -08:00
Jeff Squyres
97714716ec usnic: add some cagent verification checks
Add primitive magic number and version checking in the connectivity
checker protocol.  These checks doesn't *guarantee* to we won't get
false PINGs and ACKs, but they do significantly reduce the possibility
of interpretating random incoming fragments as PINGs or ACKs.
2016-03-09 13:25:00 -08:00
Nathan Hjelm
f8469de832 Merge pull request #1415 from hjelmn/configure_summary
configure: add a summary section at the end of configure output
2016-03-09 12:25:39 -07:00
Nathan Hjelm
fdebebc4c0 Merge pull request #1439 from hjelmn/btl_openib_send_size
btl/openib: fix inconsistency in the default settings
2016-03-09 09:31:18 -07:00
rhc54
007ca2ae08 Merge pull request #1442 from rhc54/topic/cleanup
Cleanup a debug statement. Plug a memory leak
2016-03-08 20:42:39 -08:00
Ralph Castain
af1444b6e1 Cleanup a debug statement. Plug a memory leak 2016-03-08 18:27:55 -08:00
Jeff Squyres
584b80147d usnic: set MCA_BTL_FLAGS_SINGLE_ADD_PROCS
The btl_recv.h:lookup_sender() function uses the hashed ORTE proc name
to determine the sender of the packet.  With add_procs_cutoff>0, the
usnic BTL may not have knowledge of all the senders.

Until the usNIC BTL can be adjusted to do something like the
openib/ugni BTLs (i.e., use opal_proc_for_name() to lookup unknown
sender proc names), set MCA_BTL_FLAGS_SINGLE_ADD_PROCS, which means
that ob1 will only all add_procs() once -- with all the procs in it.

Also in this commit, adapt the connectivity checker to not rely on
knowing all the senders (which is a bit easier than adapting the main
BTL send path): the receiving connectivity agent will simply echo back
the same PING message (which contains the sender's IP address+UDP
port) back to the sender without checking that it knows who the sender
is.  If the sender receives the echoed PING back on the expexted
interface, it will find a match in the pending pings list.  If the
sender receives the echoed PING back an unexpected interface, a match
will not be found, and the incoming PING message will be dropped.

Fixes open-mpi/ompi#1440
2016-03-08 17:41:42 -08:00
Jeff Squyres
4975fdcd5c usnic: allow connect(2) to fail temporarily
When connecting the connectivity checker client to its agent fails
with ECONNREFUSED, just delay a little and try again a few more times.
2016-03-08 15:35:34 -08:00
Nathan Hjelm
2ef2763f72 btl/openib: fix inconsistency in the default settings
This commit fixes an inconsistency between btl_openib_receive_queues,
btl_openib_max_send_size and btl_openib_eager_limit. Before this
commit if the ini file specified a set of default receive queues that
happen to not contain one large enough for the default max_send_size
of eager_limit users would see an error like:

   WARNING: The largest queue pair buffer size specified in the
   btl_openib_receive_queues MCA parameter is smaller than the maximum
   send size (i.e., the btl_openib_max_send_size MCA parameter), meaning
   that no queue is large enough to receive the largest possible incoming
   message fragment.  The OpenFabrics (openib) BTL will therefore be
   deactivated for this run.

     Local host: somehost
     Largest buffer size: 65536
     Maximum send fragment size: 131072

This commit adds code that detects the source of the max_send_size and
eager_limit values and sets either or both of them to the size
supported by the largest queue pair if both 1) the value is larger
than the largest queue pair size, and 2) the value was not set by the
user or a MCA configuration file.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-08 16:17:33 -07:00
Nathan Hjelm
85674b9dfc Merge pull request #1437 from hjelmn/mca_var_file_fix
opal/keval_parse: fix conditional ordering
2016-03-08 15:35:57 -07:00
rhc54
7b84207465 Merge pull request #1436 from rhc54/topic/names
Ensure the process name is positive when using direct launch
2016-03-08 10:21:46 -08:00
Nathan Hjelm
607be72de9 opal/keval_parse: fix conditional ordering
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-08 10:06:14 -07:00
Nathan Hjelm
d2f5fca82a configure: add a summary section at the end of configure output
This commit adds two m4 macros: OPAL_SUMMARY_ADD, OPAL_SUMMARY_PRINT.
OPAL_SUMMARY_ADD adds an item to a section in the summary. For example
OPAL_SUMMARY_ADD([[Transports]],[[Foo]],...,[yes]) will add the
following to the summary:

Transports
-----------------------
Foo: yes

With this commit two sections are added: Transports, Resource Managers.

The OPAL_SUMMARY_PRINT macro is called after AC_OUTPUT and prints out
some information about the build (version, projects, etc) and then
the summarys sections. It will additionally print a warning if
internal debugging is enabled.

Example output:

Open MPI configuration:
-----------------------
Version: 3.0.0 a1
Build Open Platform Abstration project: yes
Build Open Runtime project: yes
Build Open MPI project: yes
Build Open SHMEM project: no
MPI C++ bindings (deprecated): no
MPI Fortran bindings: mpif.h, use mpi, use mpi_f08
Debug build: yes

Transports
-----------------------
Cray uGNI (Gemini/Aries): no
Intel Omnipath (PSM2): no
KNEM Shared Memory: no
Linux CMA IPC: no
Mellanox MXM: no
Open UCX: no
OpenFabrics libfabric: no
OpenFabrics Verbs: no
portals4: no
QLogic Infinipath (PSM): no
tcp: yes
XPMEM Shared Memory: no

Resource Managers
-----------------------
Cray Alps: no
Grid Engine: no
LSF: no
Slurm: yes
Torque: yes

INTERNAL DEBUGGING IS ENABLED. DO NOT USE THIS BUILD FOR PERFORMANCE MEASUREMENTS!

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-03-08 10:04:15 -07:00
Ralph Castain
bac6290b22 Ensure the process name is positive when using direct launch
Fixes #1425
2016-03-08 08:31:05 -08:00
Nathan Hjelm
63bac9a4e0 opal/util: fix bug in key value parser
This commit fixes a bug in the opal key value parser that might cause
the filename parser to go past the beginning of the string.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-07 14:51:29 -07:00
Ralph Castain
4d0cc27eb7 Update the singularity support to match that of the latest singularity master. Remove the restriction on shared memory components by instructing singularity to not isolate the PID space. Add a new schizo API to allow setting up the original app_context. Ensure the container is installed prior to execution. 2016-03-05 21:47:42 -08:00
Ralph Castain
b57a191ccc Update the external client to the new PMIx init/finalize signatures 2016-03-03 20:50:20 -08:00
igor-ivanov
5e9fdabdbb Merge pull request #1420 from ggouaillardet/topic/memory_linux_memalign_enum
memory/linux: make memory_linux_memalign an enum
2016-03-03 21:21:55 +04:00
rhc54
d38e2e6655 Merge pull request #1423 from rhc54/topic/suicide
Fix registration of error handlers thru the pmix120 component.
2016-03-02 17:43:06 -08:00
Gilles Gouaillardet
5c685e2332 memory/linux: make memory_linux_memalign an enum
Thanks Igor Ivanov for the review.
2016-03-03 08:38:46 +09:00
Ralph Castain
4a55fba414 Fix registration of error handlers thru the pmix120 component. A thread-shift operation was hanging on the sync_event_base, which made it dependent on someone calling opal_progress. Unfortunately, a process in "sleep" or spinning outside the MPI library won't do that, and so we never complete errhandler registration. 2016-03-02 15:01:01 -08:00
Nathan Hjelm
2a0b3a5700 btl/vader: various threading fixes
This commit fixes several threading bugs:

 - Add an additional lock to the btl_base_endpoint_t structure to lock
   the list of pending frags. This allows the progress function to
   attempt to send pending frags without needing to drop/reaquire the
   lock. This should provide a small improvement in performance and
   fixes a potential race between adding an removing items from the
   pending list.

 - Ensure fast boxes are only set up once by updating the send count
   using atomics when needed and do not set the fast box buffer
   pointer until the fast box is set up.

Closes open-mpi/ompi#1408

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-03-02 10:50:59 -07:00
Ralph Castain
011403c04a Fix a number of issues, some of which have lingered for a long time:
* provide a more reliable way of determining that a process is a singleton by leveraging the schizo framework. Add new components for slurm, alps, and orte to detect when we are in a managed environment, and if we have been launched by mpirun or a native launcher. Set the correct envars to control ess and pmix selection in each case.

* change the relative priority of the pmix120 and pmix112 components to make pmix120 the default

* fix singleton comm-spawn by correctly setting the num_apps field of the orte_job_t created by the daemon - this fixes a segfault in register_nspace on newly created daemons

* ensure orterun doesn't propagate any ess or pmix directives in its environment

* Cleanup a few valgrind issues and memory leaks

* Fix a race condition that prevented the client from completing notification registrations (missing thread shift)

* Ensure the shizo/alps component detects launch by mpirun
2016-03-01 06:53:00 -08:00
Gilles Gouaillardet
e5d6b97db4 opal: fix pragma for GCC 6 and later
GCC 6 and later should ignore -Wpedantic instead of -pedantic
2016-02-29 13:56:22 +09:00
Ralph Castain
d28d3ee901 Make the error message on external pmix library a little clearer by separating out the libevent from the libhwloc checks 2016-02-24 11:20:25 -06:00
Gilles Gouaillardet
477991b5aa btl/openib: fix abstraction violation and use opal_memory->memoryc_set_alignment 2016-02-24 09:50:13 +09:00
Gilles Gouaillardet
d8482ce6f4 opal/mca/memory: add a memoryc_set_alignment subroutine to the OPAL memory MCA
this commit also (partially) reverts :
 - open-mpi/ompi@7de01b347c
 - open-mpi/ompi@8b05f308f9
2016-02-24 09:50:12 +09:00
Nathan Hjelm
230d04327e ompi: always enable MPI_THREAD_MULTIPLE support
This commit removes the --with-mpi-thread-multiple option and forces
MPI_THREAD_MULTIPLE support. This cleans up an abstration violation
in opal where OMPI_ENABLE_THREAD_MULTIPLE determines whether the
opal_using_threads is meaningful. To reduce the performance hit on
MPI_THREAD_SINGLE programs an OPAL_UNLIKELY is used for the
check on opal_using_threads in OPAL_THREAD_* macros.

This commit does not clean up the arguments to the various functions
that take whether muti-threading support is enabled. That should be
done at a later time.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-23 10:02:14 -07:00
Ralph Castain
d653cf2847 Convert the orte_job_data pointer array to a hash table so it doesn't grow forever as we run lots and lots of jobs in the persistent DVM. 2016-02-21 11:55:49 -08:00
Ralph Castain
8c92a179c0 Minor memory leak 2016-02-19 15:05:39 -08:00
Nathan Hjelm
2031bb6f01 btl/openib: XRC save SRQ#s on the loopback endpoint
This commit fixes a bug that can occur when communicating via XRC to
peers on the same node. UDCM was not saving the SRQ numbers on the
loopback endpoint (which shares its ib_addr info with all local peers)
so any messages to local peers use an invalid SRQ number.

Fixes open-mpi/ompi#1383

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-02-18 20:59:11 -07:00
rhc54
bfd4254a7b Merge pull request #1382 from rhc54/topic/cleanup
Cleanup some valgrind complaints about jumps with uninitialized values.
2016-02-18 17:29:37 -08:00
Ralph Castain
6e68d758b9 Cleanup some valgrind complaints about jumps with uninitialized values. Fix a few IOF issues reported by Mark Santcroos when submitting jobs from tools. Add the ability to pass directives to the --output-filename option that tell ORTE to (a) not include the jobid in the path to the output files, and (b) not to copy the output to the tool (i.e., just store it in the files).
ck

Remove stale debug

Fix a segfault if no subscribers are present
2016-02-18 16:30:37 -08:00
Nathan Hjelm
371df45bf8 btl/openib: fix locking bugs with XRC ib_addr lock
This bug fixes two issue with the ib_addr lock:

 - The ib_addr lock must always be obtained regardless of
   opal_using_threads() as the CPC is run in a seperate thread.

 - The ib_addr lock is held in mca_btl_openib_endpoint_connected when
   calling back into the CPC start_connect on any pending
   connections. This will attempt to obtain the ib_addr lock
   again. Since this is not a performance-critical part of the code
   the lock has been changed to be recursive.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-18 15:55:34 -07:00
Nathan Hjelm
4dc73d7765 btl/openib: XRC fix bug that could cause an invalid SRQ# to be used
This commit fixes a bug that occurs when attempting a get or put
operation on an endpoint that is not already connected. In this case
the remote_srqn may be set to an invalid value as the rem_srqs array
on the endpoint is not populated. This commit moves the usage of the
rem_srqs array to the internal put/get functions where it is
guaranteed this array is populated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-18 15:44:29 -07:00
Ralph Castain
60a7bc2e50 Enable the PMIx notification callback system. This currently is only supported by the pmix120 component, which is not selected by default. All other components will ignore error registration requests, and thus do not support debugger attach when launched via mpirun. Note that direct launched applications will support such attachment, but may not do so in a scalable fashion.
Fixes ##1225
2016-02-18 09:29:12 -08:00
rhc54
2745610eb7 Merge pull request #1377 from rhc54/topic/pmix
Plug a leak in the PMIx subsystem
2016-02-17 20:05:45 -08:00
Ralph Castain
efb0eff43e Plug a leak in the PMIx subsystem 2016-02-17 19:00:36 -08:00
rhc54
dc4d3edc06 Merge pull request #1372 from rhc54/topic/sing
Further enhance the support for Singularity containers.
2016-02-17 16:39:23 -08:00
Nathan Hjelm
92a15cc316 Merge pull request #1374 from hjelmn/tune_fix
Fix parsing of envvars in MCA files
2016-02-17 17:24:33 -07:00
Nathan Hjelm
32236736a4 Fix parsing of envvars in MCA files
This commit fixes a memory corruption bug when parsing lines of the
form:

-x FOO=bar

The code was making changes to the size of the buffer allocated for
key_buffer without making the appropriate changes to
key_buffer_len. This was causing subsequent calls to save_param_name
to write to invalid memory.

This commit makes the following changes:

  - Fix the above bug by modifying trim_name to move the string within
    the buffer instead of re-allocating space for the trimmed string.

  - Cleaned up both trim_name and save_param_name. Both functions took
    a prefix and suffix to trim. Problem was the prefix was not
    treated like a prefix. Instead the "prefix" was located inside the
    string using strstr then the trimmed value started after the
    substring (even in the middle of the string). To allow trimming
    both -x and --x (as well as -mca and --mca) trim_name is now
    called with each prefix.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-17 14:58:05 -07:00
Nathan Hjelm
4f4ea96940 btl/openib/udcm: fix local XRC connections
This commit ensures ib_addr->remote_xrc_rcv_qp_num value is set when
creating the loopback queue pair. This is needed when communicating
with any other local peer.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-17 14:54:19 -07:00
Ralph Castain
8f9508cace Further enhance the support for Singularity containers. Extend the "personality" command-line option to allow specifying both model (e.g., "ompi") and container (e.g., "singularity"), and add the necessary logic to support multiple options. Add a new pmix "isolated" component to handle singletons where no HNP is available since containers cannot launch the HNP. 2016-02-17 13:33:06 -08:00
Jeff Squyres
d544e0e6e0 Merge pull request #1347 from ggouaillardet/topic/dss_tests
test/dss: update tests to make them usable again, and run them
2016-02-17 09:01:36 -05:00
Nathan Hjelm
bf8360388f btl/openib/udcm: fix XRC support
This commit fixes two bugs in XRC support

 - When dynamic add_procs support was added to master the remote
   process name was added to the non-XRC request structure. The same
   value was not added to the XRC xconnect structure. This error was
   not caught because the send/recv code was incorrectly using the
   wrong structure member. This commmit adds the member and ensure the
   xconnect code uses the correct structure.

 - XRC loopback QP support has been fixed. It was 1) not setting the
   correct fields on the endpoint structure, 2) calling
   udcm_xrc_recv_qp_connect, and 3) was not initializing the endpoint
   data.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:49:04 -07:00
Nathan Hjelm
201c280e6c btl/openib: fix error in param check in mca_btl_openib_put
mca_btl_openib_put incorrectly checks the qp inline max before
allowing an inline put. This check will always fail for an endpoint
that has not been connected. The commit changes the check to use the
btl_put_local_registration_threshold instead.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:46:32 -07:00
Nathan Hjelm
123a39ac3c btl/openib: fix regression in XRC support
Commit open-mpi/ompi@400af6c52d
introduced a regression in XRC support. The commit reversed the
ordering of shared receive queue (SRQ) and completion queue (CQ)
completion. CQ creation must always preceed SRQ creation when using
XRC as the CQs are needed to create the SRQs. This commit fixes the
ordering so that CQs are always created before SRQs.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-02-16 16:46:20 -07:00
George Bosilca
9dc79f4bc1 Initialize these 2 common symbols. 2016-02-15 12:27:24 -05:00