1
1
Граф коммитов

3054 Коммитов

Автор SHA1 Сообщение Дата
Nathaniel Graham
34b4aeb17f Merge pull request #3339 from nrgraham23/mpirun_help_improvements
Additional mpirun --help changes
2017-04-19 14:05:07 -06:00
Nathaniel Graham
01312b2f90 Additional mpirun --help changes
This commit recategorizes several mpirun arguments,
and moves the information for mpirun --help arguments
to the bottom of the general help message.  I also
added the OPAL_CMD_LINE_OTYPE field to two commands
that were missed initially because they were not
in the same area as the others.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2017-04-19 11:43:45 -06:00
Jeff Squyres
a0543616ee dl/dlopen: add libs to wrapper LIBS
With this, libs (e.g., "-ldl") are not added to the wrapper LIBS
flags.  This may work on some platforms, but on at least RHEL 7.3, it
does not (i.e., compiling MPI applications fails because it can't find
dlopen).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-04-15 09:30:18 -07:00
Ralph Castain
ffbfd22d84 Fix event registration - need to increment the event index and record the number of codes in the event handler
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-13 17:35:10 -07:00
Ralph Castain
9f73974fe1 Update to latest PMIx master, including disabling the pmi-1 and pmi-2 backward compatibility as these interfere with the s1,s2 components
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-12 12:34:27 -07:00
Ralph Castain
95ae0d1df3 Cleanup timing macros for portability across compilers. Rename the --enable-timing configure option to be --enable-pmix-timing so it doesn't pickup external timing requests. Remove a stale function reference in PMIx so it can compile with timing enabled.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-10 12:56:38 +06:00
Gilles Gouaillardet
10ea991d0a hwloc: add CUDA include dir to CPPFLAGS
so hwloc configury can find nvml.h when CUDA support is built

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-05 11:46:22 +09:00
Gilles Gouaillardet
8d7541f766 hwloc: disable nvml is CUDA support is not built in Open MPI
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-04-05 11:07:34 +09:00
Ralph Castain
92c996487c Update how we pass the node regex so we pass _all_ nodes, even those without daemons. This allows the backend daemons to form a complete picture of the allocation. Include info on which nodes have daemons on them, and populate that info on the backend as well.
Set the daemons' state to "running" and mark them as "alive" by default when constructing the nidmap

Get the DVM running again

Fix direct modex by eliminating race condition caused by releasing data while sending it

Up the size limit before compressing

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-03 19:25:15 -07:00
Ralph Castain
2cc5fea8be Update to PMIx v2.0alpha
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-04-03 10:02:29 -07:00
Gilles Gouaillardet
81062b7cd2 hwloc: update hwloc to 1.11.6
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-03-31 13:35:16 +09:00
Ralph Castain
7dd34d0c9a Use the correct callback data - the callback function was expecting a bool*, not a pmix_ptl_sr_t*.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-28 17:21:47 -07:00
Ralph Castain
b398d721d5 Merge pull request #3236 from rhc54/topic/craycleanups
Silence a flood of warnings when compiling with gcc on Cray
2017-03-24 13:33:46 -07:00
Ralph Castain
ecc8000136 Silence a flood of warnings when compiling with gcc on Cray
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-24 13:37:11 -06:00
Ralph Castain
470452cba0 Correctly check the sa_family and cast the data correctly before passing it to inet_nop, and don't be quite as fancy with the pointer arithmetic as the combination was causing us to segfault every time this debug message was called.
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-24 11:42:57 -07:00
Ralph Castain
35f817911e Fix coverity issues
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-24 08:09:46 -07:00
Ralph Castain
c0bcd11bcf Fix permissions - no CI required
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-23 08:05:52 -07:00
Ralph Castain
55e4fba5f5 If we lose connection to the server after initiating a send/recv in PMIx (e.g., in PMIx_Abort), then we need to "resolve" all pending recvs to avoid hanging.
Fixes #3225

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-23 02:53:21 -07:00
Ralph Castain
d645557fa0 Update to include the PMIx 2.0 APIs for monitoring and job control. Include required integration, but leave the monitors off for now. Move the sensor framework out of ORTE as it is being absorbed into PMIx
Fix typo and silence warnings

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-21 17:47:08 -07:00
Ralph Castain
4b6d220a83 You cannot include both pmi.h and pmi2.h as they have conflicting defines in them.
Thanks to Kilian Cavalotti for pointing it out

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-19 11:53:54 -07:00
Jeff Squyres
ce0e1cd32c Merge pull request #3201 from hppritcha/jjhursey-topic/timer-gettimeofday
Jjhursey topic/timer gettimeofday
2017-03-18 20:12:36 -04:00
Jeff Squyres
b8dfd49e97 hwloc: re-enable use of autogen.pl in a tarball
Commit fec519a793 broke the ability to
run autogen.pl in a distribution tarball.  This commit restores that
ability by also distributing opal/mca/hwloc/autogen.options in the
tarball.

Skipping CI because CI does not test this functionality:

[skip ci]
bot:notest

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-17 11:41:17 -07:00
Jeff Squyres
b51c4e2797 memory/patcher: fix a compiler warning
Don't define the madvise intercept functions since we're not currently
intercepting madvise.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-16 05:43:51 -07:00
Jeff Squyres
616f20c52c timer/linux: rename component-specific functions
Several component-specific functions were named with a prefix of
"opal_timer_base", which was quite confusing.  Rename them to have a
prefix "opal_timer_linux" to make it clear that they are here in this
component (and different than *actual* opal_timer_base symbols).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-15 21:03:13 -05:00
Jeff Squyres
290d4598df timer/linux: remove global variable
This variable is only used in one file, so make it static.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-15 21:03:06 -05:00
Nathan Hjelm
6b210fa2c4 btl/ugni: do not return a frag from sendi if an endpoint is waitlisted
This fixes a hang that can occur when running bandwidth tests.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-14 10:14:13 -06:00
Nathan Hjelm
2e42b0afbd btl/ugni: move connection check into sync event
This commit makes datagram checks time based and reduces their
frequency when only the wildcard datagram is posted. This change
improves latency on knl systems.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-14 10:10:05 -06:00
Nathan Hjelm
d5aaeb74b6 btl/ugni: return a descriptor from sendi
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-13 14:56:54 -06:00
Nathan Hjelm
a19e7023d1 btl/ugni: always check local SMSG CQ
This commit removes the local operation count check from the local SMSG
completion queue. This check was leading to hangs due to an undocumented
feature of the ugni library. The local SMSG CQ is used to send credit
return messages back to the sender. The ugni library never checks for
the completion itself but relying on the SMSG user to periodically
check the CQ.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-13 14:56:54 -06:00
Nathan Hjelm
d5cdeb81d0 btl/ugni: improve multi-threaded performance
This commit updates the ugni btl to make use of multiple device
contexts to improve the multi-threaded RMA performance. This commit
contains the following:

 - Cleanup the endpoint structure by removing unnecessary field. The
   structure now also contains all the fields originally handled by the
   common/ugni endpoint.

 - Clean up the fragment allocation code to remove the need to
   initialize the my_list member of the fragment structure. This
   member is not initialized by the free list initializer function.

 - Remove the (now unused) common/ugni component. btl/ugni no longer
   need the component. common/ugni was originally split out of
   btl/ugni to support bcol/ugni. As that component exists there is no
   reason to keep this component.

 - Create wrappers for the ugni functionality required by
   btl/ugni. This was done to ease supporting multiple device
   contexts. The wrappers are thread safe and currently use a spin
   lock instead of a mutex. This produces better performance when
   using multiple threads spread over multiple cores. In the future
   this lock may be replaced by another serialization mechanism. The
   wrappers are located in a new file: btl_ugni_device.h.

 - Remove unnecessary device locking from serial parts of the ugni
   btl. This includes the first add-procs and module finalize.

 - Clean up fragment wait list code by moving enqueue into common
   function.

 - Expose the communication domain flags as an MCA variable. The
   defaults have been updated to reflect the recommended setting for
   knl and haswell.

 - Avoid allocating fragments for communication with already
   overloaded peers.

 - Allocate RDMA endpoints dyncamically. This is needed to support
   spreading RMA operations accross multiple contexts.

 - Add support for spreading RMA communication over multiple ugni
   device contexts. This should greatly improve the threading
   performance when communicating with multiple peers. By default the
   number of virtual devices depends on 1) whether
   opal_using_threads() is set, 2) how many local processes are in the
   job, and 3) how many bits are available in the pid. The last is
   used to ensure that each CDM is created with a unique id.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-13 14:46:06 -06:00
Nathan Hjelm
12bf38a25c btl/ugni: add MPI_T performance variables for ugni counters
This commit exposes ugni statistics for use with MPI_T. There is
no overhead to providing these counters.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-13 14:42:58 -06:00
Ralph Castain
c6bc3ccb76 Sync to latest PMIx master and PMIx reference server
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-11 12:50:38 -08:00
Nathan Hjelm
3caeda21dc memory/patcher: do not hook madvise
It is not possible to hook madvise at this time due to a deadlock when
using glibc.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-03-07 16:26:53 -07:00
Joshua Ladd
e2ba60b778 Merge pull request #3111 from jladd-mlnx/topic/cx5-device-param
Adding latest ConnectX-5 adapter vendor part id to OpenIB device params.
2017-03-07 13:55:46 -05:00
Nathan Hjelm
15ea9c5524 Merge pull request #3013 from hjelmn/rcache_lifo
rcache/base: do not free memory with the vma lock held
2017-03-07 09:11:04 -07:00
Jeff Squyres
c2adf359cf Merge pull request #3083 from ggouaillardet/topic/hwloc_v15
hwloc: add support for hwloc v1.5
2017-03-07 10:01:24 -05:00
Joshua Ladd
b28647857f Adding latest ConnectX-5 adapter vendor part id to OpenIB device params.
Signed-off-by: Joshua Ladd <jladd.mlnx@gmail.com>
2017-03-07 00:19:54 +02:00
Ralph Castain
aca7091114 Fix some minor compatibility issues by ensuring job-level data gets stored against wildcard rank in the cray, s1, and s2 components, and that the ext1 component translates all wildcard rank requests into the peer's rank since v1.x of PMIx doesn't understand wildcard ranks
Closes #3101

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-05 10:30:59 -08:00
Ralph Castain
1de72ff023 Silence an unnecessary error log
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 17:18:34 -08:00
Gilles Gouaillardet
7e01be60d9 hwloc: add support for hwloc v1.5
hwloc v1.5 does not support HWLOC_OBJ_OSDEV_COPROC
nor hwloc_topology_dup(), so for this version :
- do not search for coprocessors
- do not try hwloc_topology_dup(), note this is not
  used anywhere in the code base

Thanks Jeff for helping with the wording

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-03-03 09:39:24 +09:00
Ralph Castain
83199979ba Remove the stale opal/sec framework
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-03-02 15:41:56 -08:00
Jeff Squyres
5b484c91f4 btl/tcp: use show_help to print the dropped-TCP warning
Make the message more friendly / more detailed, and de-duplicate it
(just in case it happens a lot).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-03-01 16:31:29 -08:00
George Bosilca
ec4a235e6a
Allow a TCP proc release during the create.
This is mostly for error cases, where we need to release the
newly created proc. Currently the code deadlocks because the endpoint
lock is help at the release and the lock is not recursive.

Aslo added some code to print the IP addresses that don't match during
the TCP connection step.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2017-03-01 13:17:54 -05:00
Jeff Squyres
d5266aba90 Merge pull request #2955 from jsquyres/pr/hwloc-external-fixes
Fix --with-hwloc=external
2017-02-28 14:57:07 -05:00
Josh Hursey
0006f0d7c5 Merge pull request #2773 from jjhursey/topic/hook-fwk
Add a 'hook' framework
2017-02-28 12:29:50 -06:00
Jeff Squyres
fec519a793 hwloc: rename opal/mca/hwloc/hwloc.h -> hwloc-internal.h
Per a prior commit, the presence of "hwloc.h" can cause ambiguity when
using --with-hwloc=external (i.e., whether to include
opal/mca/hwloc/hwloc.h or whether to include the system-installed
hwloc.h).

This commit:

1. Renames opal/mca/hwloc/hwloc.h to hwloc-internal.h.
2. Adds opal/mca/hwloc/autogen.options to tell autogen.pl to expect to
   find hwloc-internal.h (instead of hwloc.h) in opal/mca/hwloc.
3. s@opal/mca/hwloc/hwloc.h@opal/mca/hwloc/hwloc-internal.h@g in the
   rest of the code base.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2017-02-28 07:48:42 -08:00
Joshua Hursey
c10bbfded6 ompi/hook: Add the hook/license framework
* Include a 'demo' component that shows some of the features.
 * Currently has hooks for:
   - MPI_Initialized
     - top, bottom
   - MPI_Init_thread
     - top, bottom
   - MPI_Finalized
     - top, bottom
   - MPI_Init
     - top (pre-opal_init), top (post-opal_init), error, bottom
   - MPI_Finalize
     - top, bottom
 * Other places in ompi can 'register' to hook into any one of these places
   by passing back a component structure filled with function pointers.
 * Add a `MCA_BASE_COMPONENT_FLAG_REQUIRED` flag to the MCA structure that
   is checked by the `hook` framework. If a required, static component has
   been excluded then the `hook` framework will fail to initialize.
   - See note in `opal/mca/mca.h` as to why this is checked in the `hook`
     framework and not in `opal/mca/base/mca_base_component_find.c`

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2017-02-27 12:05:53 -05:00
Gilles Gouaillardet
af0b5cffb4 asm: rename the AMD64 into X86_64
in this context, AMD64 really means amd64 or em64t, so let's
rename this into X86_64 in order to avoid any confusion

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2017-02-27 15:10:50 +09:00
Ralph Castain
e86a0dbf39 Update to PMIx master to include dlopen fixes and addition of libltdl support
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-02-22 11:54:33 -08:00
Nathan Hjelm
60ad9d1817 rcache/base: do not free memory with the vma lock held
This commit makes the vma tree garbage collection list a lifo. This
way we can avoid having to hold any lock when releasing vmas. In
theory this should finally fix the hold-and-wait deadlock detailed
in #1654.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2017-02-21 21:04:46 -07:00