ports/openmpi
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Jeff Squyres
33dd8ca81e osc_rdma_peer: properly include ompi_config.h 
Thanks to Paul Hargrove for reporting.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-03 07:39:55 -07:00
Jeff Squyres
cd6ab54fdf opal_mca.m4: fix help message typo 
Thanks to Paul Hargrove for reporting.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-03 07:24:06 -07:00
Jeff Squyres
cc53feaa66 Merge pull request #1621 from bgoglin/hwloc-for-2.0 
linux: actually enable libudev based on the result of AC_CHECK_LIB
 2016-05-03 06:34:44 -04:00
Brice Goglin
a2a721f961 linux: actually enable libudev based on the result of AC_CHECK_LIB 
instead of doing AC_CHECK_HEADERS+AC_CHECK_LIB and only using the result of the former.

Thanks to Paul Hargrove for reporting the issue (OMPI build with -m32).

(cherry picked from open-mpi/hwloc@9549fd59af)
 2016-05-03 10:00:40 +02:00
Nathan Hjelm
da695a6ce6 Merge pull request #1618 from hjelmn/new_hooks_update 
More hook updates
 2016-05-02 18:12:50 -06:00
Nathan Hjelm
566850e4b5 Merge pull request #1616 from hjelmn/rdma_fixes 
osc/rdma: clear all_sync object when obtaining a lock
 2016-05-02 17:58:43 -06:00
Nathan Hjelm
1ff79656dd patcher: remove debug fprintf 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 17:11:00 -06:00
Nathan Hjelm
581e47c271 patcher: check for clflush 
Add a feature check for clflush before trying to use the clflush
instruction. As far as I can tell there is no equivalent before the
SSE2 instruction set.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 17:10:42 -06:00
Nathan Hjelm
67fd6fa6eb Merge pull request #1615 from hjelmn/new_hooks_update 
memory/patcher: add #if check for MREMAP_FIXED
 2016-05-02 16:26:58 -06:00
Nathan Hjelm
d3d779f6d9 osc/rdma: clear all_sync object when obtaining a lock 
This commit fixes a bad synchronization detection bug that occurs when
mixing MPI_Win_fence() and MPI_Win_lock(). If no communication has
occurred in the fence epoch it is safe to just clear the all_sync
object (it was set up by fence).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 15:28:47 -06:00
Nathan Hjelm
eb14b34f04 memory/patcher: fix compilation on BSDs 
The function signature of mremap on BSD (NetBSD, FreeBSD) differs from
the linux version. Added support for the BSD style of mremap.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 14:54:08 -06:00
Nathan Hjelm
52edb43bdc memory/patcher: check for linux/mman.h 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 14:29:46 -06:00
Nathan Hjelm
f8b3be6236 patcher/overwrite: fix ia64 compilation 
Fixed a couple of typos in ia64 code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 14:10:34 -06:00
Nathan Hjelm
14c34ae9f0 memory/patcher: add #if check for MREMAP_FIXED 
This commit fixes a compile error when the system has mremap but not
MREMAP_FIXED. In this case we do not care about the value of
new_address as the argument does not exist.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-02 13:58:51 -06:00
Jeff Squyres
f3e3b800e9 opal_check_pmi.m4: remove stale code and comments 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-02 12:51:01 -04:00
rhc54
648043597a Merge pull request #1612 from ggouaillardet/poc/pmix_external_configury 
pmix/external: revamp external pmix package detection
 2016-05-02 09:46:05 -07:00
Jeff Squyres
8e0167422e NEWS: improve bullet about MPI_THREAD_MULTIPLE 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-02 10:24:19 -04:00
Jeff Squyres
5f258f06cb NEWS: Add bullet about MPI C++ bindings 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-02 06:47:38 -07:00
Jeff Squyres
265e5b9795 Merge pull request #1552 from kmroz/wip-hostname-len-cleanup-1 
ompi/opal/orte/oshmem/test: max hostname length cleanup
 2016-05-02 09:44:18 -04:00
Gilles Gouaillardet
45f9a47d77 pmix/external: fix typo and silence a warning 2016-05-02 17:15:52 +09:00
Gilles Gouaillardet
08d91b9a03 pmix/external: revamp external pmix package detection 2016-05-02 16:23:31 +09:00
Gilles Gouaillardet
cdac9e813d configury: fix MPI Java bindings message in summary 2016-05-02 16:21:52 +09:00
rhc54
2fa8b6c6ac Merge pull request #1525 from rhc54/topic/schizo 
Extend the schizo framework
 2016-05-01 15:09:08 -07:00
rhc54
c239ef5c94 Merge pull request #1606 from rhc54/topic/univ 
Ensure consistency between max_procs and univ_size values - since ort…
 2016-05-01 12:18:42 -07:00
Ralph Castain
6ac7929bd0 Extend the schizo framework to allow definition of CLI options by environment. Refactor orterun to mesh with the orted_submit code, thus improving code reuse. Eliminate the orte-submit tool as orterun can now meet that need. 
Cleanups per @jjhursey review
 2016-05-01 11:30:25 -07:00
George Bosilca
3445577f4c Avoid race conditions during BTP TCP handshake. 
In some rare cases when a process receives the connect ack while
locally updating the peer endpoint structure, we could drop the
incomming connect ack due to the fact that the send handler is
protected with a try lock (on the endpoint) and our initial send
event was not persistent. Making the send event persistent solves
all issues.
 2016-05-01 14:19:29 -04:00
Ralph Castain
0f05893952 Ensure consistency between max_procs and univ_size values - since orte wants max_procs, have the proc get that value instead of univ_size 
Make the singleton module consistent as well
 2016-05-01 11:13:33 -07:00
George Bosilca
6e6ed62a3c Allow NULL arrays for emoty datatypes. 
When building an empty datatype (aka. size = 0) because the count of
included datatypes is 0, be less strict on what the arguments are
(allow NULL pointers).
 2016-05-01 12:37:02 -04:00
George Bosilca
702f80ad7e Remove "signed vs. unsigned" warnings. 2016-05-01 11:45:48 -04:00
rhc54
737c62d34c Merge pull request #1608 from rhc54/topic/pmixapp 
Fix minor typo in PMIx packing of pmix_app_t
 2016-04-29 10:52:02 -07:00
Ralph Castain
42d9d861fc Fix minor typo in PMIx packing of pmix_app_t - thanks to Gilles for pointing it out 2016-04-29 08:55:46 -07:00
Nathan Hjelm
ec66a6a1f8 Merge pull request #1605 from hjelmn/rdma_fixes 
osc/rdma: fix global index array calculation
 2016-04-28 20:41:36 -06:00
Nathan Hjelm
7bda3eb2dc osc/rdma: fix global index array calculation 
This commit fixes a bug that occurs when ranks are either not mapped
evenly or by something other than core.

Fixes open-mpi/ompi#1599

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-04-28 19:11:11 -06:00
rhc54
f24a6bd0eb Merge pull request #1603 from rhc54/topic/attach 
Ensure the personality gets set for the debugger job launch when attaching
 2016-04-28 17:04:15 -07:00
Ralph Castain
fac409d094 Ensure the personality gets set for the debugger job launch when attaching 2016-04-28 15:28:55 -07:00
Jeff Squyres
ae81f5c845 NEWS: sync to v2.x NEWS 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-04-28 17:59:19 -04:00
rhc54
30cc878672 Merge pull request #1601 from rhc54/topic/oversub 
Up-port of change for 2.x: if user directs oversubscribe, then do not bind as we will otherwise overload resources
 2016-04-28 14:58:29 -07:00
Ralph Castain
e6ad1ad621 Up-port of change for 2.x: if user directs oversubscribe, then do not bind as we will otherwise overload resources 2016-04-28 13:21:10 -07:00
Howard Pritchard
f52dd511d4 Merge pull request #1600 from hppritcha/topic/pmix_fix_for_finalize 
pmix/cray: set fence_nb to NULL
 2016-04-28 13:50:15 -06:00
hppritcha
aa1d7b9c50 pmix/cray: set fence_nb to NULL 
Rather than have a stub function for the pmix fence_nb
operation, just set to NULL.  Causes fewer problems.

Fixes #1597
Fixes #1527

Signed-off-by: hppritcha <howardp@lanl.gov>
 2016-04-28 13:48:54 -05:00
Jeff Squyres
743f426f96 NEWS: Add bullets from 1.10 branch 
These bullets were over in the v1.10 branch, but not here on master.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-04-28 11:15:21 -04:00
Jeff Squyres
d15c324d9d NEWS: A few formatting fixes 
Also fix/update an Intel copyright (from the v2.x branch).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-04-28 11:03:55 -04:00
Jeff Squyres
d7395798ec NEWS: sync some bullets from the v2.x branch 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-04-28 11:00:01 -04:00
Jeff Squyres
4564878173 NEWS: Add release dates for each version 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-04-28 10:49:55 -04:00
Nysal Jan K.A
18cf65dc24 Remove a stray print statement 2016-04-28 18:00:52 +05:30
Nathan Hjelm
a068b9483b Merge pull request #1595 from hjelmn/sparse_group_fix 
ompi/group: fix sparse group proc reference counting
 2016-04-27 17:06:01 -06:00
Nathan Hjelm
1783d94f91 ompi/group: fix sparse group proc reference counting 
This commit fixes a bug when sparse groups are in use. Since sparse
group do not actually increment the reference counts of any procs
(they just retain the parent group) it is wrong to decrement the
reference counts of all procs in the group using
ompi_group_decrement_proc_count(). This commit makes the call to
ompi_group_decrement_proc_count() conditional on the group being
dense.

Fixes open-mpi/ompi#1593

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-04-27 15:55:13 -06:00
rhc54
39137770ae Merge pull request #1594 from rhc54/topic/size 
Correctly set the #procs in the job to "job_size", and the max_procs to "univ_size"
 2016-04-27 13:01:12 -07:00
Ralph Castain
75dc4c305a Correctly set the #procs in the job to "job_size", and the max_procs to "univ_size" 2016-04-27 12:00:19 -07:00
Nathan Hjelm
936dfe5c26 Merge pull request #1592 from hjelmn/tcp_thread_fix 
btl/tcp: fix add_procs race condition
 2016-04-27 11:40:00 -06:00