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Граф коммитов

13612 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
2b57fc3835 Add the missing headers.
This commit was SVN r21701.
2009-07-16 18:42:14 +00:00
George Bosilca
3e971e61f3 The system headers are supposed to be protected by #ifdef and not by #if.
This commit was SVN r21700.
2009-07-16 18:27:33 +00:00
Jeff Squyres
a4c905f7e9 Update svn:ignore
This commit was SVN r21699.
2009-07-16 18:26:23 +00:00
George Bosilca
d07ffedc54 No opal datatype functions in the BTL. The datatype attached to the
convertor is an ompi_datatype_t so calling the ompi level functions
is the way to go.

This commit was SVN r21698.
2009-07-16 18:25:08 +00:00
Jeff Squyres
9dc7f884b2 Fix yet another compile error from the great DDT split (r21641). Sigh.
This commit was SVN r21697.

The following SVN revision numbers were found above:
  r21641 --> open-mpi/ompi@6c5532072a
2009-07-16 18:08:03 +00:00
George Bosilca
e1383027e1 Correct a comment and cleanup/reorder the code.
This commit was SVN r21696.
2009-07-16 17:41:32 +00:00
George Bosilca
ed93b967f7 Remove some warnings about uninitialized values.
This commit was SVN r21695.
2009-07-16 17:38:09 +00:00
George Bosilca
52d013baae Add a missing header.
This commit was SVN r21694.
2009-07-16 17:21:37 +00:00
Ralph Castain
007d14f238 Add a threshold reporting level to the orte notifier framework. This takes a string value:
"critical" - any error at or above the critical severity will be reported (i.e., only critical errors)
"warning" - any error at or above the warning severity will be reported (i.e., warning and critical errors)
"notice" - pretty much everything will be reported

Default to "critical" to keep down the chatter.

Obviously, only places that call orte_notifier will be affected - all other error reporting (e.g., via opal_output calls) is unaffected.

This commit was SVN r21693.
2009-07-16 13:31:23 +00:00
Rainer Keller
7e59abd741 - Get test compiling with -Werror
This commit was SVN r21691.
2009-07-15 22:59:19 +00:00
Ralph Castain
ae6c36ae01 Ensure that jdata->num_procs is correct when the rank_file mapper is mapping more procs than are specified in the rank_file
This commit was SVN r21690.
2009-07-15 22:45:12 +00:00
George Bosilca
33e7cc864c The ops should be indexed based on the MPI datatype index (which is
actually the same as the Fortran value of the MPI type).

This commit was SVN r21689.
2009-07-15 21:30:09 +00:00
George Bosilca
dc9370598f This looks more like the correct solution. We only pack the known information, so
we can now deal with partial mapping without segfaulting.

This commit was SVN r21688.
2009-07-15 20:06:45 +00:00
Ralph Castain
e75d9b8296 Use orte_notifier to alert sys admins to checksum violations in the csum pml.
Add ability to store the RM's jobid string to tag the notifier message so that the sys admin knows what job had the problem.

This commit was SVN r21687.
2009-07-15 19:43:26 +00:00
George Bosilca
d66632fdc9 Reorder the nidmap encoding function. Add a check to make sure we don't write
outside the boundaries of the allocated array.

However, the problem is still there. If we have rmaps file containing only
partial information the num_procs get set to the wrong value (the number of
hosts in the rmaps file instead of the number of processes requested on the
command line).

This commit was SVN r21686.
2009-07-15 19:36:53 +00:00
Rainer Keller
8243831d76 - Get OpenIB BTL to work with old libibverbs installation
Tested on smoky.

This commit was SVN r21685.
2009-07-15 16:12:47 +00:00
Ralph Castain
d908bbe4a8 Add missing header file
This commit was SVN r21684.
2009-07-15 15:09:59 +00:00
Matthias Jurenz
459784fc7b The meaning of the VT configure option '--with-openmpi' was changed (see r21679), so that the options MPICC, --with-mpi-inc-dir, and --with-mpi-status-size are not longer necessary.
This commit was SVN r21683.

The following SVN revision numbers were found above:
  r21679 --> open-mpi/ompi@77b397895c
2009-07-15 11:52:48 +00:00
Ralph Castain
90a2db25e9 Modify the errmgr callback function so it passes the proc that failed instead of only the jobid.
Update the cm routed module to detect and pass orted failures.

This commit was SVN r21682.
2009-07-15 11:43:33 +00:00
Ralph Castain
247ba7e90d Use the base function to claim a slot when fault groups are not defined
This commit was SVN r21681.
2009-07-15 11:28:58 +00:00
Ralph Castain
7161b37c76 Ensure that the stdin channel is closed when we kill a local proc - all other channels will automatically be closed when the proc terminates
This commit was SVN r21680.
2009-07-15 11:28:19 +00:00
Matthias Jurenz
77b397895c - fixed bug in Fortran MPI wrappers: added conversion for the MPI Fortran constants MPI_BOTTOM and MPI_IN_PLACE
- reduced list of supported MPI implementations to Open MPI
  (changed meaning of configure option '--with-openmpi': this option indicates an Open MPI internal build)
- updated version number of integrated VT to 5.4.10

This commit was SVN r21679.
2009-07-15 10:38:10 +00:00
Shiqing Fan
03e6a117c5 Forgot to put the new CMake file into the tarball, it caused a MTT failure on Windows last night.
This commit was SVN r21678.
2009-07-15 09:40:19 +00:00
Ralph Castain
2a1cf2ae81 Create two new modex functions for send/recv of specific OPAL data types - basically, ensure that the values are packed and unpacked appropriately. Provides a convenience function as otherwise anyone wanting to send a value had to do this themselves.
Use it to send the arch.

This commit was SVN r21677.
2009-07-15 04:54:53 +00:00
Josh Hursey
dcedc99a6a It seems that we do no really want to set this particular variable to NULL. (causes badness in ess)
This commit was SVN r21673.
2009-07-14 19:01:43 +00:00
Josh Hursey
b03923cd72 Make sure to set these values to NULL, so that if we release an object (knowingly or not) twice then we do not fault by referencing unallocated memory.
This commit was SVN r21672.
2009-07-14 18:56:49 +00:00
Rainer Keller
ddaee48680 - Hmm, make check ran, but make distcheck did not know about opal_ddt_lib.c.
This commit was SVN r21665.
2009-07-14 14:45:55 +00:00
Ralph Castain
dbac602be5 Add support for the add-host and add-hostfile MPI Info keys to allow Comm_spawn users to add new hosts to those already known by mpirun.
Requires full testing once comm_spawn is fixed (Edgar is working that now).

This commit was SVN r21664.
2009-07-14 14:34:11 +00:00
Rainer Keller
e37959c168 - Need to name all the headers to get make distcheck to compile.
This commit was SVN r21663.
2009-07-14 13:54:01 +00:00
Matthias Jurenz
ea501084db Added support for cycle counter timer on Alpha and Sparc platforms
(thanks to George Bosilca)

This commit was SVN r21662.
2009-07-14 07:18:18 +00:00
Shiqing Fan
957cdceb20 Another OMPI->OPAL renaming.
This commit was SVN r21659.
2009-07-14 06:54:17 +00:00
Shiqing Fan
f991c87c6a A few structures that need to be exported for Windows.
This commit was SVN r21658.
2009-07-14 06:53:42 +00:00
Rainer Keller
af01c7bbc5 - Make diffs of merges NOT print the changes in these PDFs, by
supplying the correct svn:mime-type property

This commit was SVN r21657.
2009-07-13 21:24:37 +00:00
Rainer Keller
809ab848d4 - svn:ignore Makefile and Makefile.in
This commit was SVN r21656.
2009-07-13 20:18:38 +00:00
Ralph Castain
60edbc7220 Fix hetero operations and comm_spawn (to a point).
Remove all architecture references from ORTE and put them back in the modex using modex_send/recv calls.

Hetero operations are now fully supported again. Comm_spawn now works up to the point where it segfaults due to an error in the CID code - which now allows Edgar to dig further! :-)

This commit was SVN r21655.
2009-07-13 20:03:41 +00:00
George Bosilca
a934b9d975 Add the Open MPI specific part based on a patch from Manuel. Add the
sparc and alpha. A manpage patch is also included. This partially fixes
ticket #1973.

This commit was SVN r21654.
2009-07-13 20:01:12 +00:00
George Bosilca
81c16ac317 Add missing header.
This commit was SVN r21653.
2009-07-13 19:40:31 +00:00
George Bosilca
2143424eb5 The MCA parameter should always be taken into account, independent on
how many networks are available on the node.

This commit was SVN r21652.
2009-07-13 19:40:00 +00:00
Rainer Keller
1b9448581b - Keep the size of the predefined as before...
This commit was SVN r21651.
2009-07-13 18:05:08 +00:00
Josh Hursey
8d9d2ba7d1 Fix the datatype usage in CRCP Bkmrk. as a result of the great datatype shift in r21641
This commit was SVN r21650.

The following SVN revision numbers were found above:
  r21641 --> open-mpi/ompi@6c5532072a
2009-07-13 17:54:26 +00:00
Shiqing Fan
503f2817b3 Corresponding changes to r21641 and r21642 for Windows.
- Add a CMake macro for checking OPAL_MAX_XXX values, re-written from OPAL_WITH_OPTION_MIN_MAX_VALUE m4 function. 
- Definition prefix changes and additional datatype alignments checking.
- Finish the datatype splitting on Windows too. :-)

This commit was SVN r21649.

The following SVN revision numbers were found above:
  r21641 --> open-mpi/ompi@6c5532072a
  r21642 --> open-mpi/ompi@c971c09eb6
2009-07-13 17:39:41 +00:00
Shiqing Fan
2f552eb8c1 Missing C_DECLS.
This commit was SVN r21648.
2009-07-13 17:31:42 +00:00
Shiqing Fan
ed38e3eb9f Refresh mpi.h.cmake, according to r21642.
This commit was SVN r21647.

The following SVN revision numbers were found above:
  r21642 --> open-mpi/ompi@c971c09eb6
2009-07-13 17:29:51 +00:00
Ralph Castain
1b418dd397 Fix segfault in comm_spawn. The underlying problem breaking comm_spawn, however, remains - the change to make modex non-blocking causes the system to fail due to the arch not getting properly set.
Fix for that coming shortly.

This commit was SVN r21646.
2009-07-13 15:13:06 +00:00
Ralph Castain
1f147cf9c6 Don't do an automatic "phone home" if a regex was given to the orted.
This commit was SVN r21645.
2009-07-13 14:50:01 +00:00
Ralph Castain
235db33e83 Some more pointer array addressing cleanup
This commit was SVN r21644.
2009-07-13 14:49:20 +00:00
Pavel Shamis
e6b340d7ad Fixing compilation failure - adding missing output.h file.
This commit was SVN r21643.
2009-07-13 08:59:13 +00:00
Rainer Keller
c971c09eb6 - Runtime and include files missed in last commit
This commit was SVN r21642.
2009-07-13 04:59:13 +00:00
Rainer Keller
6c5532072a - Split the datatype engine into two parts: an MPI specific part in
OMPI
   and a language agnostic part in OPAL. The convertor is completely
   moved into OPAL.  This offers several benefits as described in RFC
   http://www.open-mpi.org/community/lists/devel/2009/07/6387.php
   namely:
    - Fewer basic types (int* and float* types, boolean and wchar
    - Fixing naming scheme to ompi-nomenclature.
    - Usability outside of the ompi-layer.
 - Due to the fixed nature of simple opal types, their information is
   completely
   known at compile time and therefore constified
 - With fewer datatypes (22), the actual sizes of bit-field types may be
   reduced
   from 64 to 32 bits, allowing reorganizing the opal_datatype
   structure, eliminating holes and keeping data required in convertor
   (upon send/recv) in one cacheline...
   This has implications to the convertor-datastructure and other parts
   of the code.
 - Several performance tests have been run, the netpipe latency does not
   change with
   this patch on Linux/x86-64 on the smoky cluster.
 - Extensive tests have been done to verify correctness (no new
   regressions) using:
   1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and
    ompi-ddt:
    a. running both trunk and ompi-ddt resulted in no differences
       (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run
       correctly).
    b. with --enable-memchecker and running under valgrind (one buglet
       when run with static found in test-suite, commited)
   2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt:
      all passed (except for the dynamic/ tests failed!! as trunk/MTT)
   3. compilation and usage of HDF5 tests on Jaguar using PGI and
      PathScale compilers.
   4. compilation and usage on Scicortex.
 - Please note, that for the heterogeneous case, (-m32 compiled
   binaries/ompi), neither
   ompi-trunk, nor ompi-ddt branch would successfully launch.

This commit was SVN r21641.
2009-07-13 04:56:31 +00:00
Ralph Castain
b97f885c00 Restore the original API to terminate individual processes instead of the entire job. This was originally removed as we didn't at that time know how to take advantage of it. Some of us are now working on proactive resilience methods that move procs prior to node failure, so this is now a required API. Modify the odls, plm, and orted functions to support this new functionality.
Continue work on the resilient mapper, completing support for fault groups.

This commit was SVN r21639.
2009-07-13 02:29:17 +00:00