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Граф коммитов

30639 Коммитов

Автор SHA1 Сообщение Дата
Gilles Gouaillardet
5751dfe91a mpi/c: fix memchecker invokation
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-03-05 16:10:42 -05:00
Gilles Gouaillardet
fc2516457b osc/pt2pt: silence valgrind warnings
explicitly add and initialize padding to keep valgrind happy

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-03-05 16:10:42 -05:00
Gilles Gouaillardet
ff746153d7 mpool/base: silence a valgrind warning
by adding a constructor to mca_mpool_base_tree_item_t

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-03-05 16:10:42 -05:00
Gilles Gouaillardet
4d92b5fcd8 memchecker: fix memchecker_call
- fix handling of contiguous datatypes with a non-zero true lower bound
- fix handling of datatypes using block of non contiguous predefined datatypes

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-03-05 16:10:42 -05:00
Austen Lauria
6c91d991ab
Merge pull request #7497 from awlauria/fix_rdma_shmem
Fix segv in btl/vader.
2020-03-05 07:45:48 -05:00
harumi kuno
3095fabf94 Fix mca_btl_ofi_finalize clean-up logic
This fix is from John L. Byrne (john.l.byrne@hpe.com).

When OFI Libfabric binds objects to endpoints, before the object can
be successfully closed, the endpoint must first be freed.  For scalable
endpoints, objects can also be bound to transmit and receive contexts,
and for objects that are bound to contexts, we need to first free the
contexts before freeing the endpoint. We also need to clear the memory
registration cache.

If we don't clean up properly, then fi\_close may not be able to close
the domain because the dom will have a non-zero ref count.

Signed-off-by: harumi kuno <harumi.kuno@hpe.com>
2020-03-04 17:51:08 -07:00
Gilles Gouaillardet
0db5a15696 ompi/dpm: plug misc memory leaks
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2020-03-04 14:54:40 -05:00
Austen Lauria
f69c8d6819 Fix segv in btl/vader.
Keep track of the connected procs in vader_add_procs().
Otherwise, the same rank will reconnect the same shmem
segment (rank 0+...) multiple times instead of the next
one as intended.

Signed-off-by: Austen Lauria <awlauria@us.ibm.com>
2020-03-04 09:32:58 -05:00
Jeff Squyres
77bf3f08f5
Merge pull request #7496 from jsquyres/pr/remove-remnants-of-zlib-from-core
Remove a few more remnants of zlib
2020-03-03 15:13:11 -05:00
Jeff Squyres
2ffdea6f52 Remove a few more remnants of zlib
The compress framework was removed in 66da0c63, but these bits escaped
removal.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2020-03-03 08:48:47 -08:00
bosilca
96559fee77
Merge pull request #7495 from hkuno/hkuno/mca_pml_base_pml_check_selected
Fix typo in mca_pml_base_pml_check_selected
2020-03-03 09:11:20 -05:00
Harumi Kuno
397cc44aa4 Fix typo in mca_pml_base_pml_check_selected
Addresses issue https://github.com/open-mpi/ompi/issues/7494

Signed-off-by: Harumi Kuno <harumi.kuno@hpe.com>
2020-03-02 22:49:40 -08:00
Jeff Squyres
0f41608651
Merge pull request #7493 from rhc54/topic/pr
Update PRRTE pointer
2020-03-01 09:42:28 -05:00
Ralph Castain
0e3d17c7c6
Update PRRTE pointer
- fix hwloc compile
- change rules to make man pages to "prrte-rules"

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-29 18:32:50 -08:00
Ralph Castain
23303eaee3
Merge pull request #7492 from rhc54/topic/sing
Fix singleton operation
2020-02-29 15:15:04 -08:00
Ralph Castain
338dd782ed
Merge pull request #7491 from rhc54/topic/tweak
Tweak the C++ binding deprecation check
2020-02-29 15:11:27 -08:00
Ralph Castain
674134430c
Fix singleton operation
OpenPMIx fills in a variety of info when it detects that we are in
singleton mode. Best way of detecting it is to look for the "singleton"
at the beginning of the returned nspace.

Make the modex recvs optional so we don't bounce up to the server and
then to the host trying to retrieve job-level info that must be given to
us at job start.

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-29 12:18:30 -08:00
Ralph Castain
4fe9ae329c
Add missing include and remove stale PML
The "yalla" pml no longer exists

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-29 11:54:38 -08:00
Ralph Castain
458b1563e2
Treat PMI-1/2 options the same
For consistency, allow the --without-pmi option

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-29 11:44:11 -08:00
Ralph Castain
9b05b1c4a7
Tweak the C++ binding deprecation check
Some of us have platform files that expressly disabled C++ support.
While it is true that v5 no longer supports C++ and thus no longer needs
us to disable it, there seems no reason to make us create platform files
that differentiate based on OMPI version just for that reason.

So if someone asks to "disable" the no-longer-existing support, just
ignore it.

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-29 10:57:45 -08:00
Jeff Squyres
277097430c
Merge pull request #7490 from jsquyres/pr/fix-debugger-flags
Re-add debugger flag configury
2020-02-29 11:25:44 -05:00
Jeff Squyres
7daf664b18
Merge pull request #7488 from rhc54/topic/update
Update the PRRTE and PMIx pointers
2020-02-29 11:25:32 -05:00
Jeff Squyres
f53abe416f Re-add debugger flag configury
Looks like this was mistakently removed in the conversion to PRRTE.
We still need CFLAGS_WITHOUT_OPTFLAGS for Open MPI's MPI debugger
interface.  Not having this functionality means that ompi/debuggers
was being compiled incorrectly, which led to -- among other things --
32 bit builds failing.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2020-02-29 07:08:12 -08:00
Ralph Castain
c537bef7d5
Update the PRRTE and PMIx pointers
Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-28 19:55:42 -08:00
Ralph Castain
cbbe67eff9
Merge pull request #7487 from bosilca/topic/pml_from_vpid0
Make sure the PML selection is consistent across the world.
2020-02-28 17:19:26 -08:00
bosilca
c4d36859ec
Merge pull request #7228 from devreal/progress-returns
Harmonize return values of progress callbacks
2020-02-28 20:15:37 -05:00
bosilca
806b35157d
Merge pull request #7261 from bosilca/fix/vprotocol
Fix/vprotocol initialization
2020-02-28 20:14:30 -05:00
George Bosilca
21d743393f
Make sure the PML is consistent across the world.
Temporary solution for the PML inconsistency issue discussed in #7475.
This patch address 2 things: first it make the PMIx key optional so that
if we are not in a full modex mode we don't do a direct modex, and
second it get the PML info from the vpid 0 instead of from the local
rank.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2020-02-28 17:53:48 -05:00
Ralph Castain
c79c95039e
Merge pull request #7474 from rhc54/topic/up
Update the PMIx and PRRTE pointers
2020-02-27 19:36:08 -08:00
Ralph Castain
9e2db26732
Fix vader local modex
Restrict the search to the "immediate" range so at worst we check with
our local server and don't go up to the host daemon.

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-27 18:15:34 -08:00
Nathan Hjelm
11f23865e9
Merge pull request #7485 from awlauria/purge_more_atomics
Purge some leftover OPAL atomics.
2020-02-27 12:44:41 -08:00
Howard Pritchard
31d7748afd
Merge pull request #7434 from hppritcha/topic/fix_a_config_with_ext_pmix_prob
fix an issue with configuring with external pmix
2020-02-27 12:19:02 -07:00
Ralph Castain
0054de0de7
Update the PMIx and PRRTE pointers
- Deal with deprecated cmd line options and rndz files
- Protect against DVM collisions
- Update atomics
- Fix fork/exec and provide better tool support (PMIx)
- Ensure we cleanup completely upon terminating a tool/server that has
  dropped rendezvous files
- Fix multithreaded launch race on remote node
- Fix bug where multiple threads can be modifying app->env
- Add a --no-ready-msg option to prte
- Utilize the PMIx_Spawn ability to do a fork/exec on our behalf to better
  setup the "prte" DVM when running in proxy mode
- Provide better isolation between DVM instances
- Fix race condition in shutdown of PMIx fork/exec framework
- Ensure ompi personality gets added in proxy scenarios

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-02-27 08:54:35 -08:00
Austen Lauria
1a27555eec Purge some leftover OPAL atomics.
Signed-off-by: Austen Lauria <awlauria@us.ibm.com>
2020-02-27 11:30:00 -05:00
Jeff Squyres
af1ec9a594
Merge pull request #7323 from bosilca/fix/7320
Trap wrong parameters to MPI_Init_thread.
2020-02-27 06:28:44 -05:00
Jeff Squyres
19acb32a3f
Merge pull request #7484 from yanagibashi/pr/fix-typos-and-descriptions
man: fix typos and descriptions.
2020-02-27 06:24:50 -05:00
Jeff Squyres
85db54969e
Merge pull request #7422 from bgoglin/hwloc-cleanup
minor hwloc configure fixes
2020-02-27 06:20:29 -05:00
Jeff Squyres
ae7f4f46f6
Merge pull request #7464 from artemry-mlnx/artemry-mlnx/disable-per-commit-ci
Disabled Mellanox Open MPI per-commit CI (as redundant).
2020-02-27 06:19:29 -05:00
Tsubasa Yanagibashi
b604f1f1fe add a description in MPI_WIN_DETACH man page.
Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
2020-02-27 18:19:55 +09:00
Tsubasa Yanagibashi
070d4c15bc update a description in MPI_Request_free man page.
Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
2020-02-27 18:17:44 +09:00
Tsubasa Yanagibashi
6c342aef68 fix some typos and spacing in man pages.
Signed-off-by: Tsubasa Yanagibashi <fj2505dt@aa.jp.fujitsu.com>
2020-02-27 18:14:26 +09:00
KAWASHIMA Takahiro
a9b16299c9
Merge pull request #7479 from yanagibashi/pr/fix-opal-initialized-ref-counter
opal: Fix opal_initialized reference counter
2020-02-27 08:49:02 +09:00
Jeff Squyres
ba1f016508
Merge pull request #7428 from hjelmn/finally_kill_the_old_cpp_bindings
ompi: remove obsolete c++ bindings
2020-02-26 17:40:25 -05:00
Nathan Hjelm
9cc0f6348d
Merge pull request #7453 from hjelmn/purge_sparc_v9_atomic_support_in_favor_of_just_builtins_for_this_platform
Purge Sparc v9 and sync atomics.
2020-02-26 14:39:46 -08:00
Nathan Hjelm
0b8baa217d ompi: remove obsolete c++ bindings
This commit contains the following changes:

The C++ bindings were removed from the standard in MPI-3.0. This
commit removes the entirety of the C++ bindings as well as the
support configury.

Removes all references to C++ from the man pages. This includes the
bindings themselves, all references to what C++ bindings return,
all not-available comments, and differences between C++ and other
language bindings.

If the user passes --enable-mpi-cxx, --enable-mpi-cxx-seek, or
--enable-cxx-exceptions, print a warning message an abort configure.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-02-26 13:04:55 -08:00
Nathan Hjelm
2277453737 opal: fix c11 compare-exchange 128-bit check
There were too many arguments being passed to the compare_exchange_strong
macro. This commit removes the extra arguments and restores the
functionality.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-02-26 13:04:04 -08:00
Nathan Hjelm
489c0840d1 asm: cleanup
Remove ASM formats as they have not been used in some time.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-02-26 13:04:04 -08:00
Nathan Hjelm
d2dd27b008 asm: remove support for Sparc v9
This commit removes the specialized support for Sparc v9 as the
architecture is unsupported. The architecture will continue to
work without CMA and using the GCC built-in atomic support.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-02-26 13:04:04 -08:00
Raafat Feki
ceb52126a8
Merge pull request #7476 from raafatfeki/topic/gpfs
Topic/gpfs
2020-02-26 10:11:38 -06:00
Nathan Hjelm
038dcad8b5 asm: remove support for __sync built-in atomics
This commit removes the unsupported __sync built-in atomics in
favor of the GCC built-ins. The priority order (if not modified
by configure flags) is: C11, custom atomics
(opal/include/opal/sys/*), then GCC built-ins.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-02-26 06:30:34 -08:00