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Nathan Hjelm
4658b761e4 rcache/udreg: make reference count thread safe 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-27 13:40:35 -06:00
Nathan Hjelm
1eb4ef438e Merge pull request #1903 from hjelmn/openib_fixes 
btl/openib: set send flags only after endpoint is connected
 2016-07-27 09:01:49 -06:00
Howard Pritchard
1dc7e9ed8f Merge pull request #1904 from hppritcha/topic/fix_cray_srun_native_launch 
pmix/cray: switch to using wildcards for some
 2016-07-27 07:12:02 -06:00
Jeff Squyres
2e0c3c7d77 libompitrace: explicitly set the .so version 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-07-27 07:05:58 -04:00
Howard Pritchard
b65bbe017f pmix/cray: switch to using wildcards for some 
items so that at least srun native launch on
cray works again.

More issues to fix when using alps.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-07-26 17:07:58 -05:00
Nathan Hjelm
5e13e1ab7d btl/openib: set send flags only after endpoint is connected 
The max inline send size on a queue pair is not available until after
the endpoint is connected. Before this commit the send flags
(including the inline flag) were set before this value was
initialized. This commit moves setting the send_flags down to
mca_btl_openib_put_internal which is only called after the endpoint is
connected. This fixes a bug when using osc/rdma.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-26 16:01:11 -06:00
Nathan Hjelm
95dead0151 Merge pull request #1891 from ggouaillardet/topic/openib_exp_atomic_cap 
configury + btl/openib: fix a typo
 2016-07-26 13:38:55 -06:00
rhc54
292563f94d Merge pull request #1899 from rhc54/topic/nodeid 
Pass the nodeid for each proc in the job. Fix a mistaken error output message
 2016-07-25 17:24:40 -07:00
Ralph Castain
9ab20cafe3 Pass the nodeid for each proc in the job. Fix a mistaken error output message 2016-07-25 15:41:15 -07:00
Artem Polyakov
9807a6d585 Merge pull request #1883 from karasevb/fix_mca_spml_call 
oshmem/fortran: fix warning mesages
 2016-07-22 16:59:11 +06:00
Boris Karasev
49b67094e0 oshmem/fortran: fix warning mesages && fix size 2016-07-22 15:54:01 +06:00
Gilles Gouaillardet
bbc6d4b3d4 ompi/communicator: remove an other debug print statement in ompi_comm_allreduce_intra_pmix_nb() 2016-07-22 15:42:56 +09:00
Gilles Gouaillardet
91ccec342c btl/openib: remove some dead code 
remove useless call to opal_mem_hooks_support_level() and the value local variable.
 2016-07-22 09:26:33 +09:00
Gilles Gouaillardet
1b3be0ac8c configury + btl/openib: fix a typo 
test for existence of struct ibv_exp_device_attr.exp_atomic_cap.
That was previously mistyped struct ibv_exp_device_attr.ext_atomic_cap
 2016-07-22 09:26:33 +09:00
Edgar Gabriel
2170eee5b7 Merge pull request #1882 from edgargabriel/pr/coverty-fixes 
fcoll/static and io/ompio: fix coverty warnings
 2016-07-21 16:12:15 -05:00
Edgar Gabriel
b0fa1fd2a1 move the internal file_open/close functions to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
ccf76b7791 moving the internal read/write functions to common/ompio 
and update all fs/fcoll/sharedfp components to use these functions.
 2016-07-21 13:08:32 -05:00
Edgar Gabriel
688710d408 make common/ompio compile 2016-07-21 13:08:32 -05:00
Edgar Gabriel
39ae93b87b modify the fcoll components to use the common/ompio print queues 2016-07-21 13:08:32 -05:00
Edgar Gabriel
fe17410943 next step in making the print_queue functionality move to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
af67c8f239 first cut on moving some ompio functionality to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
a899c0fb38 fcoll/static: fix coverty warnings 
fix coverty warnings CID 72144, CID 710677, CID 1364164
 2016-07-21 13:08:15 -05:00
rhc54
941d4fdb8b Merge pull request #1897 from rhc54/topic/fixes 
Cleanup the new naming requirements to ensure that info is correctly retrieved
 2016-07-21 11:05:09 -07:00
Ralph Castain
71de03fc67 Cleanup the new naming requirements to ensure that info is correctly retrieved 
Cleanup permissions

Restore singleton operations
 2016-07-21 09:46:03 -07:00
rhc54
58e9caca73 Merge pull request #1892 from rhc54/topic/covclean 
Cleanup Coverity warnings
 2016-07-21 08:20:53 -07:00
Pascal Deveze
a7e3de6c4f coll-portals4: No more messages passed to Portals4 bigger than the limit given by PtlNIInit 2016-07-21 15:58:20 +02:00
Pascal Deveze
175e6aa385 coll-portals4: Before calling PtlCTWait, call PtlTriggeredInc twice so be sure all pending PtlTriggredPut are triggered 2016-07-21 15:58:20 +02:00
Pascal Deveze
df59d6cdd4 coll-portals4: Correct and simplify how the data are cut in segment_nb segments (bcast) 2016-07-21 15:58:09 +02:00
Jeff Squyres
af15ec31bb Merge pull request #1889 from ggouaillardet/topic/test_travis 
test
 2016-07-21 09:31:51 -04:00
Pascal Deveze
274f8d608c coll-portals4: Change output format and change variable names (minor changes). 2016-07-21 11:06:45 +02:00
Ralph Castain
2b55ee8118 Cleanup Coverity warnings 2016-07-20 20:31:58 -07:00
Todd Kordenbrock
37ad6aa711 Merge pull request #1853 from PDeveze/Patchs-on-osc-portals4 
Patchs on osc portals4
 2016-07-20 09:22:19 -05:00
Todd Kordenbrock
210534adb3 Merge pull request #1850 from PDeveze/Patchs-on-mtl-portals4 
Patchs on mtl portals4
 2016-07-20 08:21:03 -05:00
rhc54
4bc5048608 Merge pull request #1888 from rhc54/topic/pmixup 
Update pmix2 component
 2016-07-20 06:14:05 -07:00
Ralph Castain
01a653d50a Remove a debug print in comm_cid.c. Update PMIx2 to include the revised PMIx_Get logic for higher performance by reducing the number of hash table lookups. Fix a bug where requests for data from a proc in another nspace could hang, or result in "not found". 
Remove stale file reference

Restore autogen pass thru pmix

Remove generated file
 2016-07-20 00:58:19 -07:00
Gilles Gouaillardet
936967e121 Merge pull request #1887 from ggouaillardet/topic/configury_fix 
configury: fix autogen-sh --no-ompi
 2016-07-20 16:18:51 +09:00
Gilles Gouaillardet
af23dcc123 travis: use gcc 6 and run brew upgrade 
brew update seems to remove /usr/local/Library/ENV, which breaks glibtool,
so manually upgrade a few formulas
 2016-07-20 15:48:36 +09:00
Gilles Gouaillardet
252fadf099 ompi: fix #if vs #ifdef HAVE___MALLOC_INITIALIZE_HOOK usage 2016-07-20 13:18:11 +09:00
Gilles Gouaillardet
3a32c7d8b6 configury: fix autogen-sh --no-ompi 
This fixes a regression from open-mpi/ompi@dc5adc5a91

Fortran is only required by ompi, so m4_ifdef([project_ompi],...) protect Fortran related stuff in opal

Fixes open-mpi/ompi#1884
 2016-07-20 12:23:46 +09:00
Ralph Castain
19a1837713 Revert "configury: fix autogen-sh --no-ompi" 
This reverts commit f3d3633e74225e03d0bd4ece68cde160d16f5318.
 2016-07-19 20:09:56 -07:00
Ralph Castain
36a9063466 Silence warnings 2016-07-19 17:36:13 -07:00
Gilles Gouaillardet
f3d3633e74 configury: fix autogen-sh --no-ompi 
This fixes a regression from open-mpi/ompi@dc5adc5a91

Fortran is only required by ompi, so m4_ifdef([project_ompi],...) protect Fortran related stuff in opal

Fixes open-mpi/ompi#1884
 2016-07-20 09:25:14 +09:00
Nathan Hjelm
40f71f2d7a Merge pull request #1873 from hjelmn/comm_split_update 
Improve MPI_Comm_split_type scalability
 2016-07-19 14:36:44 -06:00
Nathan Hjelm
5edab9cb22 Merge pull request #1855 from hjelmn/comm_rework 
ompi/comm: refactor communicator cid code
 2016-07-19 10:04:17 -06:00
Pascal Deveze
6d6ec66705 btl/portals4: Take into account the limitation of portals4 (max_msg_size) 2016-07-19 15:19:29 +02:00
Pascal Deveze
9cac32ba6a mtl/portals4: Modifications concerning the short message management 2016-07-19 11:21:50 +02:00
Pascal Deveze
49e9936914 mtl/portals4: Some little patches 2016-07-19 11:18:55 +02:00
Nathan Hjelm
ced853476f Merge pull request #1878 from hjelmn/f_rops 
ompi/fortran: fix typos in request RMA bindings
 2016-07-18 13:48:41 -06:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings 
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2016-07-18 13:46:28 -06:00
Nathan Hjelm
4c49c42dd0 ompi/comm: improve comm_split_type scalability 
This commit introduces a new algorithm for MPI_Comm_split_type. The
old algorithm performed an allgather on the communicator to decide
which processes were part of the new communicators. This does not
scale well in either time or memory.

The new algorithm performs a couple of all reductions to determine the
global parameters of the MPI_Comm_split_type call. If any rank gives
an inconsistent split_type (as defined by the standard) an error is
returned without proceeding further. The algorithm then creates a
communicator with all the ranks that match the split_type (no
communication required) in the same order as the original
communicator. It then does an allgather on the new communicator (which
should be much smaller) to determine 1) if the new communicator is in
the correct order, and 2) if any ranks in the new communicator
supplied MPI_UNDEFINED as the split_type. If either of these
conditions are detected the new communicator is split using
ompi_comm_split and the intermediate communicator is freed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-18 12:47:05 -06:00