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Автор SHA1 Сообщение Дата
Alex Mikheev
dd2405a625 OSHMEM: fixes typo in c11 generic 2016-09-26 11:43:38 +03:00
Alex Mikheev
71712df8d1 OSHMEM: fixes arg mismatch in c11 macros 2016-09-26 09:59:23 +03:00
Alex Mikheev
caa1d17672 OSHMEM: fixes compiler warnings 2016-09-25 18:16:45 +03:00
Alex Mikheev
9a21392ec2 OSHMEM: v1.3: add C11 generics 
add missing put*/get* functions. Move *put|get16 functions from shmemx.h to
shmem.h as required by 1.3 spec.
 2016-09-25 16:43:00 +03:00
Alex Mikheev
3a034352fe OSHMEM: v1.3: adds shmem_fetch and shmem_set AMOs 
The commit adds atomic set and fetch functions as described in
oshmem 1.3 spec.
 2016-09-25 12:03:42 +03:00
Gilles Gouaillardet
92dd719df1 oshmem: move finalization from the liboshmem destructor into oshmem_onexit() 
so we can use the legacy start_pes even when Open MPI is compiled with
--enable-static or --disable-visibility
 2016-09-21 09:21:26 +09:00
Joshua Ladd
d5e65c4860 Merge pull request #2052 from alex-mikheev/topic/spml_ikrit_zcopy_fix 
OSHMEM: spml ikrit: fixes zero copy
 2016-09-12 12:35:32 -04:00
Alex Mikheev
439456ae96 OSHMEM: spml ikrit: fixes zero copy 
Allow mxm to use zero copy in put() and get() for the large messages.
 2016-09-04 12:16:09 +03:00
Gilles Gouaillardet
184d53a018 oshmem: swap fields of oshmem_proc_data_t to prevent padding 
previously, the definition was

struct oshmem_proc_data_t {
    int num_transports;
    char * transport_ids;
};

so in 64 bits arch, the compiler would very likely insert a 4 bytes
padding before the two fields in order to have transport_ids aligned
 2016-09-01 14:20:14 +09:00
Gilles Gouaillardet
0a25420dac oshmem: get rid of oshmem_proc_t and use ompi_proc_t instead 
store oshmem related per proc data in an oshmem_proc_data_t struct,
that is stored in the padding section of an ompi_proc_t

this data can be accessed via the OSHMEM_PROC_DATA(proc) macro

Fixes open-mpi/ompi#2023
 2016-09-01 14:20:14 +09:00
Gilles Gouaillardet
6b7bc64101 spml/yoda: MCA_PML(add_procs) all procs from oshmem_comm_world 
and fix oshmem_group_proc_{init,create} so they use the number of procs in oshmem_comm_world

Thanks Debendra Das for the report and Josh Ladd for the guidance

Fixes open-mpi/ompi#1966
 2016-08-17 14:24:02 +09:00
Gilles Gouaillardet
273e56096b configury: capture configury command line 
configury command line is quoted and made available via the OPAL_CONFIGURE_CLI macro.
it can be retrieved via {orte-info,ompi_info,oshmem_info} -c, or
{orte-info,ompi_info,oshmem_info} --all --parseable | grep ^config:cli:
 2016-07-29 09:14:09 +09:00
Boris Karasev
49b67094e0 oshmem/fortran: fix warning mesages && fix size 2016-07-22 15:54:01 +06:00
Gilles Gouaillardet
2a98f9fcc3 oshmem: replace header files in include/mpp with symlinks 
This is a work around to avoit what looks like a CMake bug

Thanks Paul Kapinos for the report

Fixes open-mpi/ompi#1868
 2016-07-14 14:32:25 +09:00
Rainer Keller
3ec1b868d1 Fix missing include and missing MCA_SPML_CALL. 2016-07-13 11:23:47 +02:00
Pavel Shamis (Pasha)
1bb778857f OSHMEM: Removing erroneous initialization check 
Since the introduction of the on-demand proc allocation
the check become erroneous and irrelevant.
Moreover, it completely breaks OpenSHMEM support in OMPI.

Signed-off-by: Pavel Shamis (Pasha) <pasharesearch@gmail.com>
 2016-06-24 16:57:10 -05:00
Igor Ivanov
a8ab5b55b9 oshmem: Fix double lock issue 
Signed-off-by: Igor Ivanov <igor.ivanov.va@gmail.com>
 2016-06-10 15:52:31 +03:00
Gilles Gouaillardet
544a2f1631 configury: fix mpifort and oshmemfort wrapper data 
NAG compiler use gcc (and not ld) as a linker, so in order to pass an option to the linker,
the flag is -Wl,-Wl,,<option> and not -Wl,<option>

Thanks Paul Hargrove for the report
 2016-06-06 11:54:12 +09:00
Nathan Hjelm
dbfab94ede atomic/mxm: rename symbol that is a duplicate of one in atomic/ucx 
This fixes an error when building with --enable-static.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-05-25 15:34:40 -06:00
Jeff Squyres
265e5b9795 Merge pull request #1552 from kmroz/wip-hostname-len-cleanup-1 
ompi/opal/orte/oshmem/test: max hostname length cleanup
 2016-05-02 09:44:18 -04:00
Karol Mroz
941f2c1e0b oshmem: fixup hostname max length usage 
Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
 2016-04-25 07:08:23 +02:00
Nathan Hjelm
ae0ffbb67f Merge pull request #1397 from hjelmn/enable_thread_multiple 
ompi: always enable MPI_THREAD_MULTIPLE support
 2016-04-23 08:40:22 -06:00
Igor Ivanov
75050b44a2 oshmem: Align OSHMEM API with spec v1.3 (extension api changes) 
openshmem.org specification does not mention about extension api
but there is an agreemnet to do these changes for related ex api too.
see
Annex G:
Version 1.3
Added const to every read-only pointer argument
 2016-04-18 19:38:16 +03:00
Igor Ivanov
157f81b699 oshmem: Align OSHMEM API with spec v1.3 (Added const to every read-only pointer argument) 
Annex G:
Version 1.3
Added const to every read-only pointer argument
 2016-04-18 19:25:31 +03:00
Igor Ivanov
c02d0b7161 oshmem: Align OSHMEM API with spec v1.3 (shmem_lock change signature) 
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in
SHMEM_LOCK
See Sections 8.9.1
 2016-04-18 19:25:18 +03:00
Igor Ivanov
a52b0797fc oshmem: Align OSHMEM API with spec v1.3 (shmem_wait change signature) 
Annex G:
Version 1.3
Added volatile to remotely accessible pointer argument in SHMEM_WAIT
See Sections 8.7.1
 2016-04-18 19:24:55 +03:00
Karol Mroz
a468c3ba1a opal_info_support: pass component map when handling params 
Pass component_map to opal_info_do_params(). It will be needed to output
component versions.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
 2016-04-02 21:17:44 +02:00
Jeff Squyres
2c5b39718d oshmem: fix scoll_null_alltoall() prototype 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-03-26 03:50:57 -07:00
Gilles Gouaillardet
cb84f582b2 oshmem: add missing prototypes for pshmem_alltoall[s]{32,64} 2016-03-24 15:22:29 +09:00
Mike Dubman
1d8fbfefb0 Merge pull request #1478 from igor-ivanov/pr/oshmem-v1.3-alltoall 
oshmem: Add alltoall
 2016-03-22 07:51:36 +02:00
Mike Dubman
7483a66ef6 Merge pull request #1455 from igor-ivanov/pr/oshmem-v1.3 
oshmem: Add Non-blocking Remote Memory Access Routines
 2016-03-22 07:50:11 +02:00
Igor Ivanov
1bed5d8aee oshmem: Align OSHMEM API with spec v1.3 (update scoll/basic) 2016-03-21 11:46:01 +02:00
Igor Ivanov
9825157fc4 oshmem: Align OSHMEM API with spec v1.3 (Add man for alltoall) 2016-03-21 10:43:45 +02:00
Igor Ivanov
3e1e131744 oshmem: Align OSHMEM API with spec v1.3 (Add alltoall Fortran) 2016-03-21 10:43:44 +02:00
Igor Ivanov
bd6eaac561 oshmem: Align OSHMEM API with spec v1.3 (Add alltoall C function) 2016-03-21 10:43:43 +02:00
Igor Ivanov
50906b34b3 oshmem: Align OSHMEM API with spec v1.3 (Add scoll/alltoall interface) 2016-03-21 10:43:31 +02:00
Igor Ivanov
e690521cdd oshmem/scoll: Fix bug in basic/barrier algorithm 2016-03-21 10:34:55 +02:00
Igor Ivanov
36c29b393b oshmem: Align OSHMEM API with spec v1.3 (update spml/yoda) 2016-03-17 19:06:39 +02:00
Igor Ivanov
b2700320a3 oshmem: Align OSHMEM API with spec v1.3 (update spml/ikrit) 2016-03-17 19:06:39 +02:00
Igor Ivanov
450ea6684c oshmem: Align OSHMEM API with spec v1.3 (update spml/ucx) 2016-03-17 19:06:38 +02:00
Igor Ivanov
e0d87225eb oshmem: Align OSHMEM API with spec v1.3 (update shmem.h) 2016-03-17 19:06:38 +02:00
Igor Ivanov
e59bf31d6b oshmem: Align OSHMEM API with spec v1.3 (Add mans for nonblocking put/get Fortran functions) 2016-03-17 19:06:37 +02:00
Igor Ivanov
70139147ab oshmem: Align OSHMEM API with spec v1.3 (Add nonblocking put/get Fortran functions) 2016-03-17 19:06:21 +02:00
Igor Ivanov
abe7ba5720 oshmem: Align OSHMEM API with spec v1.3 (Add nonblocking put/get C functions) 2016-03-15 14:05:00 +02:00
Igor Ivanov
8464b6147a oshmem: Align OSHMEM API with spec v1.3 (Add spml/get_nb interface) 2016-03-15 14:04:59 +02:00
Nathan Hjelm
230d04327e ompi: always enable MPI_THREAD_MULTIPLE support 
This commit removes the --with-mpi-thread-multiple option and forces
MPI_THREAD_MULTIPLE support. This cleans up an abstration violation
in opal where OMPI_ENABLE_THREAD_MULTIPLE determines whether the
opal_using_threads is meaningful. To reduce the performance hit on
MPI_THREAD_SINGLE programs an OPAL_UNLIKELY is used for the
check on opal_using_threads in OPAL_THREAD_* macros.

This commit does not clean up the arguments to the various functions
that take whether muti-threading support is enabled. That should be
done at a later time.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-02-23 10:02:14 -07:00
George Bosilca
68c36ea9dc Fix two annoying warnings in our UCX support. 2016-02-14 00:02:16 -05:00
Alex Mikheev
f627608e42 OSHMEM/UCX: implements atomic support 
ucx atomic component has a real code now.
fixes bug in spml ucx arr_procs
removes redundant parameter checks from atomic components.
 2016-01-21 16:02:28 +02:00
Gilles Gouaillardet
fec973efda configury: test portability 
replace test ... -o ... with test ... || test ...
and test ... -a ... with test ... && test ...
 2015-12-28 13:58:45 +09:00
Gilles Gouaillardet
99d046d060 scoll/fca: add missing #include <alloca.h> 2015-12-24 14:33:58 +09:00
igor.ivanov@itseez.com
08c18195e7 oshmem/sshmem: Fix warnings in verbs component 2015-12-16 17:37:00 +02:00
igor.ivanov@itseez.com
6448bd07a4 oshmem/spml: Fix warnings in ikrit component 2015-12-16 17:36:54 +02:00
Mike Dubman
dc3b138b7f Merge pull request #1178 from igor-ivanov/pr/oshmem-fix-preconnect_all 
oshmem: Add skew to the oshmem_preconnect_all
 2015-12-03 21:00:52 +02:00
Jeff Squyres
a25cf8065d Merge pull request #1176 from igor-ivanov/pr/oshmem-rm-java 
oshmem: Remove JAVA support
 2015-12-03 13:26:09 -05:00
Igor Ivanov
c4fc1ec081 oshmem: Add skew to the oshmem_preconnect_all 2015-12-03 18:32:26 +02:00
Igor Ivanov
63bc655b53 oshmem: Remove JAVA support 
There is a conclusion to remove java support
(see https://github.com/open-mpi/ompi-release/pull/787)
 2015-12-03 11:59:07 +02:00
Igor Ivanov
5c061abf4e oshmem: Fix scan coverity issues 
1324740 - Resource leak
1304562 - Unchecked return value
1340514 - Dereference before null check
1340515 - Use of untrusted scalar value
1340516 - Use of untrusted string value
 2015-12-02 12:49:19 +02:00
igor-ivanov
d8c85738ab Merge pull request #1151 from igor-ivanov/pr/opal-abort-vars 
Add new mca variables opal_abort_delay and opal_abort_print_stack
 2015-12-01 16:27:11 +04:00
Igor Ivanov
9d1e09b42b oshmem: Align OSHMEM API with spec v1.2 (fix ISO C99 warning for variadic macro) 2015-11-27 14:23:06 +02:00
igor.ivanov@itseez.com
c15bf147bf opal: Add opal_abort_print_stack mca variable with aliases for ompi/oshmem 
This commit allows to control output during abnormal oshmem/ompi application
termination.
Fixed issue in backtrace output. HAVE_BACKTRACE was never set so user was limited
in control of this variable.
Two related mca variables are moved to opal layer. Corresponding aliases are
added for ompi and oshmem.
 2015-11-25 18:18:33 +02:00
Igor Ivanov
ab70ca6d16 Revert "oshmem: Add new mca variables oshmem_abort_delay and oshmem_abort_print_stack" 
This commit is replaced with more suitable.

This reverts commit f288cd7254.
 2015-11-25 13:27:34 +02:00
Igor Ivanov
217423e278 oshmem: Align OSHMEM API with spec v1.2 (java) 2015-11-24 19:29:23 +02:00
Igor Ivanov
456d32716a oshmem: Align OSHMEM API with spec v1.2 (backward compatibility for extensions) 2015-11-24 18:58:29 +02:00
Igor Ivanov
56214eb295 oshmem: Align OSHMEM API with spec v1.2 (rename extensions to shmemx_) 2015-11-24 18:58:28 +02:00
Igor Ivanov
e8b11500d5 oshmem: Align OSHMEM API with spec v1.2 (introduce SHMEM_SPEC_VERSION macro) 2015-11-24 18:58:27 +02:00
Igor Ivanov
05d947d55a oshmem: Align OSHMEM API with spec v1.2 (support environment variables) 2015-11-24 18:57:56 +02:00
Igor Ivanov
4213886822 oshmem: Align OSHMEM API with spec v1.2 (Update man pages) 2015-11-24 18:21:09 +02:00
Igor Ivanov
396f8dcf71 oshmem: Align OSHMEM API with spec v1.2 (Change profiling headers) 2015-11-24 18:21:09 +02:00
Igor Ivanov
2dc2159b4c oshmem: Align OSHMEM API with spec v1.2 (add new functions) 2015-11-24 18:21:08 +02:00
Igor Ivanov
50d68cc02e oshmem: Align OSHMEM API with spec v1.2 (fortran api) 2015-11-24 18:21:08 +02:00
Igor Ivanov
9942dfdabf oshmem: Align OSHMEM API with spec v1.2 (modify existing functions) 
Several functions are moved from to shmem-compat.h to shmem.h and
back.
 2015-11-24 18:21:07 +02:00
Mike Dubman
3e93ef49da Merge pull request #1134 from alex-mikheev/topic/ikrit_err_fix_fix 
SPML/IKRIT: opal_progress and ud_only fixes
 2015-11-15 19:20:55 -06:00
Mike Dubman
a7128af8c4 OSHMEM/ikrit: fix valgrind error 2015-11-15 14:51:41 +02:00
Alex Mikheev
0755a59091 SPML/IKRIT: opal_progress and ud_only fixes 
Some MXM tls such as self, shm can comlete requests immediately.
Make sure that opal_progress() is called before before request
is completed.

fix ud_only logic when hw rdma channel is using ud and main
transport is rc or dc.
 2015-11-15 12:13:24 +02:00
Mike Dubman
8ec5c99412 Merge pull request #1126 from alex-mikheev/topic/ikrit_err_fix 
Topic/ikrit err fix
 2015-11-11 15:31:06 +02:00
Mike Dubman
93847e4ca9 Merge pull request #1125 from igor-ivanov/pr/oshmem_new_mca_vars 
oshmem: Add new mca variables oshmem_abort_delay and oshmem_abort_pri…
 2015-11-11 14:34:12 +02:00
Alex Mikheev
cd8ea438d3 OSHMEM/SPML/ikrit: memcheck support 2015-11-11 13:46:20 +02:00
Alex Mikheev
2a8de45b43 OSHMEM/SPML/IKRIT: check return of mxm_req_send correctly 
do not force memory registration if main and additional comm
channels are both ud
 2015-11-11 13:34:26 +02:00
Igor Ivanov
f288cd7254 oshmem: Add new mca variables oshmem_abort_delay and oshmem_abort_print_stack 
This commit allows to control output during abnormal oshmem application
termination.
 2015-11-11 13:33:28 +02:00
Igor Ivanov
c0518c0417 oshmem: Enable force output for error messages 
This change fixes issue when oshmem related error messages are not
visible for an user.
 2015-11-11 13:26:10 +02:00
Alex Mikheev
b269dd59e3 OSHMEM/SPML/UCX: fixes typo in add_procs 2015-11-02 16:48:26 +02:00
Mike Dubman
4c723614e8 Merge pull request #1042 from igor-ivanov/master 
oshmem: Fix tarball issue
 2015-10-28 19:44:26 +02:00
Ralph Castain
e1778f5f9b Revert " changing the destruct function of list release API to release list items" 
This reverts commit 720fa860ee.
 2015-10-27 15:24:45 -07:00
Jeff Squyres
c5eef3c534 oshmem: minor compiler warning stomp 2015-10-23 06:21:56 -07:00
Howard Pritchard
ce8e241922 Merge pull request #1055 from nrgraham23/java_warnings_fix 
Fix Java related warnings
 2015-10-22 08:17:45 -06:00
Nathaniel Graham
c4d70ab425 Fix Java related warnings 
This commit fixes java related warnings.

Fixes #881

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
 2015-10-21 17:14:25 -07:00
rhc54
0bc51375f3 Merge pull request #1004 from rppendya/rppendya_list_release 
Releasing the list items when list destructor is called
 2015-10-21 14:34:19 -07:00
yosefe
cc76db8d39 ucx: reduce components priority to 5. 2015-10-21 17:38:25 +03:00
Raghavendra Pendyala
720fa860ee changing the destruct function of list release API to release list items 
caused a bug in oshmem application. Fixing the bug with this patch
 2015-10-20 12:58:23 -07:00
Alex Mikheev
f2b501a862 oshmem: Add UCX spml. 2015-10-20 19:46:02 +03:00
Alex Mikheev
b020b628fc oshmem/memheap: optimized mkey lookup. 
Fast path lookup is done in inline funcion.
 2015-10-20 19:45:51 +03:00
yosefe
bd3f4c8cc7 spml/memheap: add support for mkey unpack. 2015-10-20 19:45:50 +03:00
Alex Mikheev
8fa14386ea spml_ikrit: fixes typo in .h file. 2015-10-20 19:36:41 +03:00
Igor Ivanov
5afa149b98 oshmem: Fix tarball issue 
Fixes open-mpi/ompi#1036
 2015-10-20 19:11:26 +03:00
Jeff Squyres
62351f442a help: remove stale help messages and files 
Found by contrib/check-help-strings.pl.
 2015-10-13 16:50:20 -04:00
Gilles Gouaillardet
291a464efb configury: remove the --enable-mpi-profiling option 
and directly call the PMPI_* symbols from C and Fortran bindings
 2015-10-13 08:52:35 +09:00
Gilles Gouaillardet
53b952dc2b oshmem: invoke the C PMPI_* subroutines instead of the MPI_* ones 
when profiling is built.
This prevents oshmem subroutines from being wrapped twice by third
party tools (e.g. once in oshmem and once in MPI)
see discussion starting at http://www.open-mpi.org/community/lists/devel/2015/08/17842.php

Thanks to Bert Wesarg for bringing this to our attention
 2015-10-13 08:52:03 +09:00
Igor Ivanov
d379873443 oshmem: Add man.1 pages for oshmem tools 
This changes add man pages for oshrun, oshcc and oshfort as well as
depricated shmemrun, shmemcc and shmemfort.
 2015-10-05 15:41:28 +03:00
Igor Ivanov
7de0537a1d oshmem: Add help message for fatal issues in scoll:mpi and scoll:fca 
Signed-off-by: Igor Ivanov <Igor.Ivanov@itseez.com>
 2015-09-21 18:50:20 +03:00
Igor Ivanov
ec7cd13a81 oshmem: Fix compilation warnings 2015-09-21 18:50:20 +03:00