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Howard Pritchard
1dc7e9ed8f Merge pull request #1904 from hppritcha/topic/fix_cray_srun_native_launch 
pmix/cray: switch to using wildcards for some
 2016-07-27 07:12:02 -06:00
Jeff Squyres
2e0c3c7d77 libompitrace: explicitly set the .so version 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-07-27 07:05:58 -04:00
Howard Pritchard
b65bbe017f pmix/cray: switch to using wildcards for some 
items so that at least srun native launch on
cray works again.

More issues to fix when using alps.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-07-26 17:07:58 -05:00
Nathan Hjelm
95dead0151 Merge pull request #1891 from ggouaillardet/topic/openib_exp_atomic_cap 
configury + btl/openib: fix a typo
 2016-07-26 13:38:55 -06:00
rhc54
292563f94d Merge pull request #1899 from rhc54/topic/nodeid 
Pass the nodeid for each proc in the job. Fix a mistaken error output message
 2016-07-25 17:24:40 -07:00
Ralph Castain
9ab20cafe3 Pass the nodeid for each proc in the job. Fix a mistaken error output message 2016-07-25 15:41:15 -07:00
Artem Polyakov
9807a6d585 Merge pull request #1883 from karasevb/fix_mca_spml_call 
oshmem/fortran: fix warning mesages
 2016-07-22 16:59:11 +06:00
Boris Karasev
49b67094e0 oshmem/fortran: fix warning mesages && fix size 2016-07-22 15:54:01 +06:00
Gilles Gouaillardet
bbc6d4b3d4 ompi/communicator: remove an other debug print statement in ompi_comm_allreduce_intra_pmix_nb() 2016-07-22 15:42:56 +09:00
Gilles Gouaillardet
91ccec342c btl/openib: remove some dead code 
remove useless call to opal_mem_hooks_support_level() and the value local variable.
 2016-07-22 09:26:33 +09:00
Gilles Gouaillardet
1b3be0ac8c configury + btl/openib: fix a typo 
test for existence of struct ibv_exp_device_attr.exp_atomic_cap.
That was previously mistyped struct ibv_exp_device_attr.ext_atomic_cap
 2016-07-22 09:26:33 +09:00
Edgar Gabriel
2170eee5b7 Merge pull request #1882 from edgargabriel/pr/coverty-fixes 
fcoll/static and io/ompio: fix coverty warnings
 2016-07-21 16:12:15 -05:00
Edgar Gabriel
a899c0fb38 fcoll/static: fix coverty warnings 
fix coverty warnings CID 72144, CID 710677, CID 1364164
 2016-07-21 13:08:15 -05:00
rhc54
941d4fdb8b Merge pull request #1897 from rhc54/topic/fixes 
Cleanup the new naming requirements to ensure that info is correctly retrieved
 2016-07-21 11:05:09 -07:00
Ralph Castain
71de03fc67 Cleanup the new naming requirements to ensure that info is correctly retrieved 
Cleanup permissions

Restore singleton operations
 2016-07-21 09:46:03 -07:00
rhc54
58e9caca73 Merge pull request #1892 from rhc54/topic/covclean 
Cleanup Coverity warnings
 2016-07-21 08:20:53 -07:00
Jeff Squyres
af15ec31bb Merge pull request #1889 from ggouaillardet/topic/test_travis 
test
 2016-07-21 09:31:51 -04:00
Ralph Castain
2b55ee8118 Cleanup Coverity warnings 2016-07-20 20:31:58 -07:00
Todd Kordenbrock
37ad6aa711 Merge pull request #1853 from PDeveze/Patchs-on-osc-portals4 
Patchs on osc portals4
 2016-07-20 09:22:19 -05:00
Todd Kordenbrock
210534adb3 Merge pull request #1850 from PDeveze/Patchs-on-mtl-portals4 
Patchs on mtl portals4
 2016-07-20 08:21:03 -05:00
rhc54
4bc5048608 Merge pull request #1888 from rhc54/topic/pmixup 
Update pmix2 component
 2016-07-20 06:14:05 -07:00
Ralph Castain
01a653d50a Remove a debug print in comm_cid.c. Update PMIx2 to include the revised PMIx_Get logic for higher performance by reducing the number of hash table lookups. Fix a bug where requests for data from a proc in another nspace could hang, or result in "not found". 
Remove stale file reference

Restore autogen pass thru pmix

Remove generated file
 2016-07-20 00:58:19 -07:00
Gilles Gouaillardet
936967e121 Merge pull request #1887 from ggouaillardet/topic/configury_fix 
configury: fix autogen-sh --no-ompi
 2016-07-20 16:18:51 +09:00
Gilles Gouaillardet
af23dcc123 travis: use gcc 6 and run brew upgrade 
brew update seems to remove /usr/local/Library/ENV, which breaks glibtool,
so manually upgrade a few formulas
 2016-07-20 15:48:36 +09:00
Gilles Gouaillardet
252fadf099 ompi: fix #if vs #ifdef HAVE___MALLOC_INITIALIZE_HOOK usage 2016-07-20 13:18:11 +09:00
Gilles Gouaillardet
3a32c7d8b6 configury: fix autogen-sh --no-ompi 
This fixes a regression from open-mpi/ompi@dc5adc5a91

Fortran is only required by ompi, so m4_ifdef([project_ompi],...) protect Fortran related stuff in opal

Fixes open-mpi/ompi#1884
 2016-07-20 12:23:46 +09:00
Ralph Castain
19a1837713 Revert "configury: fix autogen-sh --no-ompi" 
This reverts commit f3d3633e74225e03d0bd4ece68cde160d16f5318.
 2016-07-19 20:09:56 -07:00
Ralph Castain
36a9063466 Silence warnings 2016-07-19 17:36:13 -07:00
Gilles Gouaillardet
f3d3633e74 configury: fix autogen-sh --no-ompi 
This fixes a regression from open-mpi/ompi@dc5adc5a91

Fortran is only required by ompi, so m4_ifdef([project_ompi],...) protect Fortran related stuff in opal

Fixes open-mpi/ompi#1884
 2016-07-20 09:25:14 +09:00
Nathan Hjelm
40f71f2d7a Merge pull request #1873 from hjelmn/comm_split_update 
Improve MPI_Comm_split_type scalability
 2016-07-19 14:36:44 -06:00
Nathan Hjelm
5edab9cb22 Merge pull request #1855 from hjelmn/comm_rework 
ompi/comm: refactor communicator cid code
 2016-07-19 10:04:17 -06:00
Pascal Deveze
9cac32ba6a mtl/portals4: Modifications concerning the short message management 2016-07-19 11:21:50 +02:00
Pascal Deveze
49e9936914 mtl/portals4: Some little patches 2016-07-19 11:18:55 +02:00
Nathan Hjelm
ced853476f Merge pull request #1878 from hjelmn/f_rops 
ompi/fortran: fix typos in request RMA bindings
 2016-07-18 13:48:41 -06:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings 
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2016-07-18 13:46:28 -06:00
Nathan Hjelm
4c49c42dd0 ompi/comm: improve comm_split_type scalability 
This commit introduces a new algorithm for MPI_Comm_split_type. The
old algorithm performed an allgather on the communicator to decide
which processes were part of the new communicators. This does not
scale well in either time or memory.

The new algorithm performs a couple of all reductions to determine the
global parameters of the MPI_Comm_split_type call. If any rank gives
an inconsistent split_type (as defined by the standard) an error is
returned without proceeding further. The algorithm then creates a
communicator with all the ranks that match the split_type (no
communication required) in the same order as the original
communicator. It then does an allgather on the new communicator (which
should be much smaller) to determine 1) if the new communicator is in
the correct order, and 2) if any ranks in the new communicator
supplied MPI_UNDEFINED as the split_type. If either of these
conditions are detected the new communicator is split using
ompi_comm_split and the intermediate communicator is freed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-18 12:47:05 -06:00
Nathan Hjelm
035c2e2e2a ompi/comm: refactor communicator cid code 
This commit simplifies the communicator context ID generation by
removing the blocking code. The high level calls: ompi_comm_nextcid
and ompi_comm_activate remain but now call the non-blocking variants
and wait on the resulting request. This was done to remove the
parallel paths for context ID generation in preperation for further
improvements of the CID generation code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-18 12:47:05 -06:00
Nathan Hjelm
8081cf651e Merge pull request #1881 from hjelmn/pmix_bug_fix 
pmix/pmix2x: add missing increment in loop
 2016-07-18 12:01:59 -06:00
Edgar Gabriel
31b7be6e88 Merge pull request #1851 from edgargabriel/pr/ompio-reorg 
Some ompio code cleanup and reoarganization
 2016-07-18 12:19:34 -05:00
Nathan Hjelm
03bce91de8 pmix/pmix2x: add missing increment in loop 
This commit fixes a bug in the pmix2x client code where a loop
variable is not correctly incremented. This was leading to hangs and
crashes when creating intercommunicators. Also fixed two double
increments in other loops.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-07-18 10:35:05 -06:00
Pascal Deveze
f19a2b961c osc/portals4: Correct an error in an if statement 2016-07-18 13:16:12 +02:00
Pascal Deveze
81823d7a63 osc/portals4: Store the no_locks parameter in osc_portals4_component.no_locks 2016-07-18 11:51:52 +02:00
Pascal Deveze
76b38651da osc/portals4: For the contiguous datatype, take into account the lower bound before calling portals4 2016-07-18 11:20:50 +02:00
Pascal Deveze
7aaf16e7fe osc/portals4: Put/Get splitting because Portals4 may restrict sizes 2016-07-18 10:49:28 +02:00
Pascal Deveze
025201b459 osc/portals4: set the initial value of req_status.MPI_ERROR to MPI_SUCCESS 2016-07-18 09:52:56 +02:00
Pascal Deveze
aa0d687a0a osc/portals4: Display an ouput message if ompi_osc_portals4_get_dt() or ompi_osc_portals4_get_op() returns an error 2016-07-18 09:52:56 +02:00
Pascal Deveze
c4181909a4 osc/portals4: Be sure that the ME are operationnal (wait for the PTL_EVENT_LINK) 2016-07-18 09:52:56 +02:00
Pascal Deveze
e99e7d08ed osc/portals4: For the ME, use the uid from PtlGetUid instead of PTL_UID_ANY 2016-07-18 09:52:56 +02:00
Pascal Deveze
56b36eeb7e osc/portals4: Format of "target_disp" is OPAL_PTRDIFF_TYPE and %lu is the appropriate format to display it. 2016-07-18 09:52:55 +02:00
Pascal Deveze
a76566c754 osc/portals4: To allocate a PT, use REQ_OSC_TABLE_ID and test that the right ID is allocated 2016-07-18 09:52:55 +02:00