ports/openmpi
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Gilles Gouaillardet
1a34224948 hwloc: do not set the HWLOC_TOPOLOGY_FLAG_WHOLE_SYSTEM flag 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-07-20 17:39:16 +09:00
Ralph Castain
fca68b070b Merge pull request #3934 from rhc54/topic/singleton 
Fix the isolated pmix component. Cleanup the ess/singleton component …
 2017-07-19 16:02:37 -05:00
Ralph Castain
543c16b28d Fix the isolated pmix component. Cleanup the ess/singleton component - we shouldn't be automatically discovering the local topology as that is now done on-demand. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-07-19 12:14:29 -07:00
Artem Polyakov
6cbea90209 Merge pull request #3932 from artpol84/rm_yoda_news/master 
NEWS: fix removed legacy support section for v3.0.0
 2017-07-19 08:48:49 -07:00
Howard Pritchard
503de6ca7d Merge pull request #3933 from hppritcha/topic/fix_s1_bug 
pmix/s1: fix problems with ref counting in s1
 2017-07-19 07:03:38 -06:00
Geoffrey Paulsen
71333a4b14 Transitioning ownership of rmaps/seq and rmaps/rank_file from Intel to IBM. 2017-07-18 21:31:01 -04:00
Gilles Gouaillardet
da34e2f109 ess/base: silence a warning 
by fixing a static initializer

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-07-19 09:30:53 +09:00
Howard Pritchard
2fa0c4c6ec pmix/s1: fix problems with ref counting in s1 
s1 pmix component wasn't doing proper ref counting

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-07-18 15:59:28 -06:00
Artem Polyakov
e34362de0a NEWS: fix removed legacy support section for v3.0.0 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-07-19 02:14:15 +07:00
Ralph Castain
83d21e3130 Merge pull request #3930 from rhc54/topic/signal 
Fix signal forwarding on ORTE daemons
 2017-07-18 13:44:37 -05:00
Ralph Castain
8a98aab6cc Fix signal forwarding on ORTE daemons so that _all_ daemons do it, regardless of environment. Add missing support for SIGTSTP and a few others. 
Thanks to Eugene Dedits for reporting the problem.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2017-07-18 09:58:55 -07:00
Josh Hursey
8688219091 Merge pull request #3775 from jjhursey/fix/mca_base_verbose-file 
opal/mca: Fix mca_base_verbose file suffix processing
 2017-07-18 10:14:42 -05:00
Edgar Gabriel
b363a0f4db Merge pull request #3908 from edgargabriel/pr/lustre-header-update 
fs/lustre: update lustre header file used in the component
 2017-07-18 09:57:11 -05:00
Gilles Gouaillardet
6d6f5fdfb8 Merge pull request #3894 from ggouaillardet/topic/pml_ob1_progress 
pml/ob1: fix mca_pml_ob1_progress_needed usage
 2017-07-18 10:43:44 +09:00
Artem Polyakov
bdb698a9b6 Merge pull request #3923 from artpol84/rm_yoda_news/master 
Yoda removal (update docs)
 2017-07-17 17:51:36 -07:00
Gilles Gouaillardet
1b46fe2d9a pml/ob1: fix mca_pml_ob1_progress_needed usage 
correctly use OPAL_ATOMIC_ADD32() that returns the *new* value
and *not* the previous one.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-07-18 09:30:57 +09:00
Howard Pritchard
771f51af12 Merge pull request #3917 from hppritcha/topic/remove_cr_config_master 
configure: remove CR/FT related options
 2017-07-17 16:12:07 -06:00
Artem Polyakov
cc156a332b Sync NEWS with v3.0.x 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-07-18 05:05:40 +07:00
Artem Polyakov
a70d28cbb0 oshmem: Update README file to reflect available SPML options. 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-07-18 04:39:03 +07:00
Nathan Hjelm
5a5edfce88 Merge pull request #3876 from hppritcha/topic/add_psm2_get_stats 
mtl/psm2: add pvar support for PSM2 MQ stats
 2017-07-17 16:02:51 -05:00
Nathan Hjelm
2060fcf8bb mca/base: use the project name when registering pvars 
References #3918. Close when applied to v2.0.x, v2.x, and v3.0.x.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-17 15:57:50 -05:00
Howard Pritchard
45e2771162 configure: remove CR/FT related options 
As part of the process for addressing removal of CR/FT related
code from master (and hence from the 3.0.0 release), it was agreed
at the OMPI devel F2F on 7/13/17 that we'd break this in to two
pieces:

1) remove the configure arguments (fewer changes)
2) remove all the CR/FT code, etc. in a subsequent bigger commit
    that may not make it in to 3.0.0 in time.

By doing 1), the available configure options would not change
in a subsequent 3.0.x release if we end up not being able to do 2)
before 3.0.0 is released.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-07-17 13:48:59 -06:00
Nathan Hjelm
e5343c16c0 btl/vader: remove debug code that should not be in a release 
References #3902. Close when in master, v3.0.x, and v2.x.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-17 11:58:47 -05:00
Edgar Gabriel
13b14f5efe Merge pull request #3906 from edgargabriel/pr/lazy_open_fix 
common/ompio: fix the lazy_open flag
 2017-07-17 10:58:13 -05:00
Edgar Gabriel
931c2021c7 Merge pull request #3905 from edgargabriel/pr/fix-grouping-options 
io/ompio: fix grouping option
 2017-07-17 10:55:57 -05:00
Edgar Gabriel
bc8f642211 fs/lustre: update lustre header file used in the component 
liblustreapi.h is at this point deprecated. Switch to lustreapi.h instead

fixes issue #3223

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-07-17 10:33:52 -05:00
Nathan Hjelm
9b702fb9bd ompi: clean up topo helper functions 
This commit removes the communicator topo helper functions in favor
of functions in mca/topo/base.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-17 10:30:42 -05:00
Edgar Gabriel
8e17827a13 common/ompio: fix the lazy_open flag 
fixes an erroneous error code being returned when activating
the mca_io_ompio_sharedfp_lazy_open flag with MPI_MODE_APPEND.

fixes issue #3904

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-07-17 09:44:34 -05:00
Edgar Gabriel
4bdddfb74b io/ompio: fix grouping option 
changing the value of mca_io_ompio_grouping_option lead to a segfault due to
a double-free problem. Remove the erroneous free statements that have been introduced
and add a note ensuring that we are not re-adding them back at that spot.

fixes issue #3903

Signed-off-by: Edgar Gabriel <egabriel@central.uh.edu>
 2017-07-17 09:38:10 -05:00
Yossi Itigin
b0692c6836 Merge pull request #3833 from yosefe/topic/pml-yalla-dt-size-fix 
pml/yalla: fix getting size of a continuous type.
 2017-07-16 11:19:16 +03:00
Gilles Gouaillardet
6e35cfc19a btl/sm: fix misc memory leak 
as reported by Coverity with CID 1415105

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-07-16 13:02:55 +09:00
Jeff Squyres
0cbd52b062 Merge pull request #3889 from jsquyres/pr/die-sm-btl-die-die-die 
btl/sm: effectively delete the SM BTL
 2017-07-15 17:09:31 -04:00
Jeff Squyres
5cf64e6555 btl/sm: effectively delete the SM BTL 
If a user explicitly asks for the "sm" BTL, print a show_help message
saying that the SM BTL is dead, and the user should be using "vader".

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2017-07-15 09:33:08 -07:00
Artem Polyakov
0929c32cd8 Merge pull request #3893 from karasevb/yoda_spml_remove 
Remove Yoda SPML
 2017-07-15 08:47:31 -07:00
Artem Polyakov
b8ab4c1ad7 Merge pull request #3895 from artpol84/fix_btl_defaults/master 
contrib: Fix mellanox platform defaults (btl/sm -> btl/vader)
 2017-07-15 02:36:34 -05:00
Artem Polyakov
35f15a0ba5 contrib: Fix mellanox platform defaults (btl/sm -> btl/vader) 
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2017-07-15 14:32:26 +07:00
Howard Pritchard
701a1d0218 mtl/psm2: add pvar support for PSM2 MQ stats 
Add pvars for PSM2 MQ stats to help in analyzing performance
of Omnipath.

Tested (modestly) using modified OSU pt2pt benchmarks.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-07-14 10:31:35 -06:00
Gilles Gouaillardet
9124afbeae pmix: do not invoke PMIX_INFO_CREATE() with a zero size 
Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#3854

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2017-07-14 15:00:05 +09:00
Boris Karasev
77c50efb95 Yoda SPML is removed 
Signed-off-by: Boris Karasev <karasev.b@gmail.com>
 2017-07-14 08:47:16 +03:00
Artem Polyakov
4d3e22e815 Merge pull request #3870 from hppritcha/topic/repair_s2_launch 
pmix/s2: fix srun native launch for pmi2
 2017-07-13 12:45:22 -05:00
Josh Hursey
2726df8d41 Merge pull request #3866 from jjhursey/doc/ppc-xl-pgi-note 
README: Note about ld issue for XL and PGI on PPC
 2017-07-13 11:30:38 -05:00
Ryan Grant
0ce8590e7c Merge pull request #3837 from tkordenbrock/topic/master/get.retry.timeout 
master: mtl-portals4: add timeout to rendezvous get fragments
 2017-07-13 09:59:54 -06:00
Nathan Hjelm
6fb81f20e4 mtl/psm2: create mca variables to shadow PSM2 environment variables 
This commit enables MCA support for the following PSM2 environment
variables: PSM2_DEVICES, PSM2_MEMORY, PSM2_MQ_SENDREQS_MAX,
PSM2_MQ_RECVREQS_MAX, PSM2_MQ_RNDV_HFI_THRESH,
PSM2_MQ_RNDV_SHM_THRESH, PSM2_RCVTHREAD, PSM2_SHAREDCONTEXTS,
PSM2_SHAREDCONTEXTS_MAX, and PSM2_TRACEMASK. These variable can be set
by MCA if they are not already set in the environment.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-13 09:48:46 -06:00
Howard Pritchard
eeb91bc82b pmix/s2: fix srun native launch for pmi2 
recent changes that broke native launch on cray
using srun or aprun was also broke native launch
using pmi2.

This commit fixes this problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2017-07-12 17:45:52 -06:00
Jeff Squyres
ccf17808b6 Merge pull request #3258 from markalle/pr/symbol_name_pollution 
symbol name pollution
 2017-07-12 16:19:25 -05:00
Joshua Hursey
1c6a253774 README: Note about ld issue for XL and PGI on PPC 
* Related to Issue #2606 and Issue #3075
 * The core problem in those two issues is related to a regression in
   ld upstream. Add a note in the README about this issue.

Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
 2017-07-12 14:13:24 -05:00
Nathan Hjelm
3c0e94afab mpi/neighbor_allgatherv: fix copy&paste error and add helpers 
This commit adds a helper function to get the inbound and outbound
neighbor count and updates the neighbor_allgatherv bindings to use the
correct count when checking the input parameters.

Fixes #2324

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-12 12:54:24 -06:00
Nathan Hjelm
bf1c863b96 osc/pt2pt: make progress in flush*_local 
There is no reason not to progress OSC during the MPI_Win_flush_local
and MPI_Win_flush_all_local calls. This fixes #3750.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2017-07-12 09:09:58 -06:00
Artem Polyakov
832f1b03a4 Merge pull request #3790 from artpol84/orte/iof_sbatch 
orte/iof: Address the case when output is a regular file
 2017-07-12 09:38:01 -05:00
Gilles Gouaillardet
f99667372f Merge pull request #3848 from ggouaillardet/topic/pbspro_libcrypto 
configury: fix PBS Pro support
 2017-07-12 21:01:58 +09:00