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Граф коммитов

25412 Коммитов

Автор SHA1 Сообщение Дата
Ralph Castain
19a1837713 Revert "configury: fix autogen-sh --no-ompi"
This reverts commit f3d3633e74.
2016-07-19 20:09:56 -07:00
Ralph Castain
36a9063466 Silence warnings 2016-07-19 17:36:13 -07:00
Gilles Gouaillardet
f3d3633e74 configury: fix autogen-sh --no-ompi
This fixes a regression from open-mpi/ompi@dc5adc5a91

Fortran is only required by ompi, so m4_ifdef([project_ompi],...) protect Fortran related stuff in opal

Fixes open-mpi/ompi#1884
2016-07-20 09:25:14 +09:00
Nathan Hjelm
40f71f2d7a Merge pull request #1873 from hjelmn/comm_split_update
Improve MPI_Comm_split_type scalability
2016-07-19 14:36:44 -06:00
Nathan Hjelm
5edab9cb22 Merge pull request #1855 from hjelmn/comm_rework
ompi/comm: refactor communicator cid code
2016-07-19 10:04:17 -06:00
Nathan Hjelm
ced853476f Merge pull request #1878 from hjelmn/f_rops
ompi/fortran: fix typos in request RMA bindings
2016-07-18 13:48:41 -06:00
Nathan Hjelm
8bdcb40dc4 ompi/fortran: fix typos in request RMA bindings
This commit fixes typos on the C side of the request-based RMA binding. We
were not returning the request on success but on failure. Thanks to
@alazzaro for reporting and @ggouaillardet, and @vondele for tracking
this down.

Fixes part of open-mpi/ompi#1869

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2016-07-18 13:46:28 -06:00
Nathan Hjelm
4c49c42dd0 ompi/comm: improve comm_split_type scalability
This commit introduces a new algorithm for MPI_Comm_split_type. The
old algorithm performed an allgather on the communicator to decide
which processes were part of the new communicators. This does not
scale well in either time or memory.

The new algorithm performs a couple of all reductions to determine the
global parameters of the MPI_Comm_split_type call. If any rank gives
an inconsistent split_type (as defined by the standard) an error is
returned without proceeding further. The algorithm then creates a
communicator with all the ranks that match the split_type (no
communication required) in the same order as the original
communicator. It then does an allgather on the new communicator (which
should be much smaller) to determine 1) if the new communicator is in
the correct order, and 2) if any ranks in the new communicator
supplied MPI_UNDEFINED as the split_type. If either of these
conditions are detected the new communicator is split using
ompi_comm_split and the intermediate communicator is freed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-18 12:47:05 -06:00
Nathan Hjelm
035c2e2e2a ompi/comm: refactor communicator cid code
This commit simplifies the communicator context ID generation by
removing the blocking code. The high level calls: ompi_comm_nextcid
and ompi_comm_activate remain but now call the non-blocking variants
and wait on the resulting request. This was done to remove the
parallel paths for context ID generation in preperation for further
improvements of the CID generation code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-18 12:47:05 -06:00
Nathan Hjelm
8081cf651e Merge pull request #1881 from hjelmn/pmix_bug_fix
pmix/pmix2x: add missing increment in loop
2016-07-18 12:01:59 -06:00
Edgar Gabriel
31b7be6e88 Merge pull request #1851 from edgargabriel/pr/ompio-reorg
Some ompio code cleanup and reoarganization
2016-07-18 12:19:34 -05:00
Nathan Hjelm
03bce91de8 pmix/pmix2x: add missing increment in loop
This commit fixes a bug in the pmix2x client code where a loop
variable is not correctly incremented. This was leading to hangs and
crashes when creating intercommunicators. Also fixed two double
increments in other loops.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-18 10:35:05 -06:00
rhc54
739c5803f3 Merge pull request #1880 from jsquyres/pr/pmix-remove-all-tabs
pmix: replace all tabs with spaces
2016-07-17 20:24:54 -07:00
Jeff Squyres
72f41d4490 pmix: replace all tabs with spaces
No code or logic changes

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-07-17 15:08:33 -04:00
Jeff Squyres
1c32742c66 pmix_ext20: fix syntax error
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-07-17 15:04:12 -04:00
Ralph Castain
99f7096031 Fix permissions 2016-07-16 21:03:55 -07:00
rhc54
339235bee0 Merge pull request #1879 from rhc54/topic/fixdyn
Fix dynamic operations by ensuring that we only fire the debugger rel…
2016-07-16 14:28:12 -07:00
Ralph Castain
d4071fbd1c Fix dynamic operations by ensuring that we only fire the debugger release if the debugger is attached, and that the OPAL pmix key for directing events to non-default handlers matches the PMIx spelling 2016-07-16 13:20:41 -07:00
Edgar Gabriel
195ec89732 fcoll/base: mv coll_array functionis to fcoll base
the coll_array functions are truly only used by the fcoll modules, so move
them to fcoll/base. There is currently one exception to that rule (number of aggreagtors
logic), but that function will be moved in a long term also to fcoll/base.
2016-07-14 08:41:14 -05:00
Edgar Gabriel
1f1504ebbb remove some unused code 2016-07-14 08:41:14 -05:00
Joshua Ladd
06930a0423 Merge pull request #1840 from artpol84/yalla_perf_fix
pml/yalla: fix yalla performance regression
2016-07-14 10:55:30 +03:00
Gilles Gouaillardet
2a98f9fcc3 oshmem: replace header files in include/mpp with symlinks
This is a work around to avoit what looks like a CMake bug

Thanks Paul Kapinos for the report

Fixes open-mpi/ompi#1868
2016-07-14 14:32:25 +09:00
Gilles Gouaillardet
c3c262b3a8 ompi/group: get rid of malloc(0) in ompi_group_intersection(...)
Thanks Lisandro Dalcin for the report

Fixes open-mpi/ompi#1866
2016-07-14 11:19:46 +09:00
Ralph Castain
1ceb35ba5c Fix singletons - do not include the PMIx tool URI in the environment provided to child processes 2016-07-13 17:33:34 -07:00
rhc54
2414244171 Merge pull request #1872 from rhc54/topic/continuous
Add support for continuously operating applications
2016-07-13 15:29:31 -07:00
Ralph Castain
20a91c2baf Add a new --continuous flag to mpirun that directs ORTE to let a job continue running as app procs terminate. Don't attempt to restart them. Add event notification of abnormally terminating procs, and demonstrate that in the mpi_spin test program.
Cleanup debug message
2016-07-13 15:28:33 -07:00
Jeff Squyres
0d1afba640 Merge pull request #1867 from hpcraink/pr/shmem_fixes
Fixes to shmem
2016-07-13 08:52:25 -04:00
Rainer Keller
3ec1b868d1 Fix missing include and missing MCA_SPML_CALL. 2016-07-13 11:23:47 +02:00
Rainer Keller
997a00c06f Correct "configure --help" output and amend the default setting if user
provides a wrong input value, like "runtime"
(which works for MPI, but not for OSHMEM)
2016-07-13 11:23:07 +02:00
Jeff Squyres
e28951e738 Merge pull request #1863 from jsquyres/pr/specfile-fortran-flags-fix
openmpi.spec: don't export FFLAGS
2016-07-12 17:23:42 -04:00
Jeff Squyres
48938f542c openmpi.spec: don't export FFLAGS
The Open MPI configure script has long-since only paid attention to
FCFLAGS.  Indeed, it will warn if you set FFLAGS or F77FLAGS.  So
remove them from the spec file.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-07-12 14:22:20 -07:00
rhc54
cc2a648124 Merge pull request #1862 from rhc54/topic/mapping
Fix a bug in the handling of nper<foo> when -host or -hostfile was gi…
2016-07-12 10:40:28 -07:00
Ralph Castain
aa78f902f2 Add some missing info to the job map so remote procs get their app_rank 2016-07-12 09:50:12 -07:00
Ralph Castain
ddd0d05de3 Fix a bug in the handling of nper<foo> when -host or -hostfile was given. Correctly mark slots as "given" when we auto-assign them. Ensure we don't set the number of procs when using nper<foo> so the PPR mapper can correctly assing them. 2016-07-12 09:27:02 -07:00
Ralph Castain
0e433eaa78 Silence warning 2016-07-11 19:43:02 -07:00
Gilles Gouaillardet
a27ced0966 configury: fix typos in {ompi,opal}_setup_cxx 2016-07-12 10:09:32 +09:00
Nathan Hjelm
34b0a4fc78 Merge pull request #1859 from hjelmn/rdma_fixes
osc/rdma: fix bug in CAS
2016-07-11 11:43:39 -06:00
Nathan Hjelm
b47208e909 osc/rdma: fix bug in CAS
This commit fixes a bug in the RDMA compare-and-swap implementation
that caused the origin value to always be written even if the compare
should have failed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-07-11 09:54:23 -06:00
Artem Polyakov
44f01b437d Merge pull request #1858 from artpol84/fix_pmix_slurm
opal/pmix: add blocking fence to SLURM components
2016-07-11 21:28:25 +06:00
Edgar Gabriel
c8b1c6cae1 Merge pull request #1856 from edgargabriel/pr/zero-size-iread-iwrite
io/ompio: fix the request in case of a zero size write/read operation
2016-07-11 08:19:02 -05:00
Gilles Gouaillardet
14624506df coll/libnbc: do not exchange data between roots in ompi_coll_libnbc_ireduce_scatter_inter()
this is now useless since the scatter is done via the local communicator
2016-07-11 17:18:30 +09:00
Artem Polyakov
72585a905f opal/pmix: add blocking Fence to SLURM components.
Blocking fence is used in yalla del proc. Native pmix exposes this functionality.
We need to expose it for SLURM's s1/s2 components as well.

Also this commit fixes uninitialized `rc` in fencenb's of both
components.
2016-07-11 09:43:15 +03:00
Edgar Gabriel
3dd81e9e09 io/ompio: fix the request in case of a zero size write/read operation 2016-07-08 14:11:22 -05:00
Gilles Gouaillardet
a55d57406b coll/base: fix non zero lower bound datatype handling in mca_coll_base_alltoallv_intra_basic_inplace() 2016-07-08 16:55:26 +09:00
Gilles Gouaillardet
7b8094aac1 coll/base: silence misc warning
as reported by Coverity with CIDs 1363349-1363362

Offset temporary buffer when a non zero lower bound datatype is used.

Thanks Hristo Iliev for the report

(cherry picked from commit 0e393195d9)
2016-07-08 13:06:26 +09:00
Gilles Gouaillardet
678d08647b coll/libnbc: various fixes
- correctly handle non commutative operators
 - correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent
 - revamp NBC_Sched_op so it takes two buffers and matches ompi_op_reduce semantic
 - various fix for inter communicators

Thanks Yuki Matsumoto for the report
2016-07-07 15:55:49 +09:00
Gilles Gouaillardet
3e559a14a9 coll/inter: fix non standard ddt handling
- correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent

Thanks Yuki Matsumoto for the report
2016-07-07 15:49:59 +09:00
Gilles Gouaillardet
488d037d51 coll/basic: fix non standard ddt handling
- correctly handle non zero lower bound ddt
 - correctly handle ddt with size > extent

Thanks Yuki Matsumoto for the report
2016-07-07 15:49:53 +09:00
Gilles Gouaillardet
c06fb04a9a coll/base: fix non zero lower bound ddt handling in ompi_coll_base_reduce_intra_basic_linear()
Thanks Yuki Matsumoto for the report
2016-07-07 15:49:48 +09:00
Artem Polyakov
8e16f47492 Merge pull request #1688 from artpol84/fix_base64
Fix base64 implementation in pmix framework.
2016-07-07 10:47:50 +06:00