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Граф коммитов

20059 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
17b3c7e906 Fix the issue reported by Gilles Gouaillardet regarding the
MPI_PROC_NULL persistent requests.

This commit was SVN r31524.
2014-04-24 18:07:09 +00:00
Nathan Hjelm
52f519dacb Allow MPI_MODE_NOPRECEDE | MPI_MODE_NOSUCCEED for MPI_Win_fence
This combination does not make sense but is not explicitly forbidden by
the standard so remove the argument check for this combination.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31523.
2014-04-24 17:36:10 +00:00
Nathan Hjelm
0849d61e38 btl/vader: improve performance under heavy load and eliminate a racy
feature

This commit should fix a hang seen when running some of the one-sided
tests. The downside of this fix is it reduces the maximum size of the
messages that use the fast boxes. I will fix this in a later commit.

To improve performance under a heavy load I introduced sequencing to
ensure messages are given to the pml in order. I have seen little-no
impact on the message rate or latency with this change and there is a
clear improvement to the heavy message rate case.

Lets let this sit in the trunk for a couple of days to ensure that
everything is working correctly.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31522.
2014-04-24 17:36:03 +00:00
Jeff Squyres
e243805ed8 coll tuned alltoallv: correctly handle 0-sized messages with MPI_IN_PLACE
Patch from Gilles Gouaillardet on #4517 to fix handling 0-sized
messages in coll tuned with MPI_ALLTOALLV and MPI_IN_PLACE.

Reviewed by Jeff Squyres.

Fixes trac:4517

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31521.

The following Trac tickets were found above:
  Ticket 4517 --> https://svn.open-mpi.org/trac/ompi/ticket/4517
2014-04-24 16:55:53 +00:00
Jeff Squyres
b449c750b7 coll basic: correctly handle alltoall[vw] 0-sized messages
Patch from Gilles Gouaillardet on #4506 to correctly handle 0-sized
messages in coll/basic MPI_Alltoallv and MPI_Alltoallw.

Reviewed by Jeff Squyres.

Fixes trac:4506.

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31519.

The following Trac tickets were found above:
  Ticket 4506 --> https://svn.open-mpi.org/trac/ompi/ticket/4506
2014-04-24 16:25:43 +00:00
Jeff Squyres
ca80c7a9bd cart_sub.c: allow remain_dims==NULL if there is no topology on comm
Patch submitted by Gilles Gouaillardet on #4518.  Reviewed by Jeff.

Fixes trac:4518

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31517.

The following Trac tickets were found above:
  Ticket 4518 --> https://svn.open-mpi.org/trac/ompi/ticket/4518
2014-04-24 16:10:44 +00:00
Jeff Squyres
e9b694f1d8 coll_base_comm_unselect.c: fix memory leaks
Ensure to also OBJ_RELEASE the neightbor and ineighbor modules.

Fixes trac:4444 (this patch is from that ticket).

This commit was SVN r31516.

The following Trac tickets were found above:
  Ticket 4444 --> https://svn.open-mpi.org/trac/ompi/ticket/4444
2014-04-24 15:53:06 +00:00
Jeff Squyres
d8715f1e3a Close 3 more fd's that were leaking into child processes.
Child processes now look clean; I can't find any more fd's that are
leaking from the parent to children.

Refs trac:4550

This commit was SVN r31515.

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-24 15:36:24 +00:00
Jeff Squyres
790cdb5cc7 Sigh. It helps when you commit the right version of the finished
code.

This commit fixes minor errors in the incorrectly-committed r31513
(new fd close-on-exec convenience function).

Refs trac:4550

This commit was SVN r31514.

The following SVN revision numbers were found above:
  r31513 --> open-mpi/ompi@e1655ae68d

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-24 13:20:32 +00:00
Jeff Squyres
e1655ae68d opal/util/fd.c: add new convenience function for setting FD_CLOEXEC
Paul Hargrove pointed out that Stevens tells us that we should
FD_GETFL before FD_SETFL.  And so we shall.

Make a new convenience function to do this (opal_fd_set_cloexec()),
just so that we don't have to litter this 2-step process throughout
the code.

Refs trac:4550

This commit was SVN r31513.

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-24 13:04:49 +00:00
Jeff Squyres
410f5bfb91 oob_tcp_listener.c: set both ends of this thread to be close-on-exec
This pipe is used to communicate between threads in this process.
Mark both fd as close-on-exec so that children don't inherit this
pipe.

Refs trac:4550

This commit was SVN r31512.

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-23 21:46:41 +00:00
Jeff Squyres
67bb0c261a hwloc: ensure that an internal fd is marked as close-on-exec
Make sure that an internal, long-lived hwloc fd is marked as
close-on-exec so that children don't inherit it.  This patch is
committed upstream in the hwloc master and v1.9 branches as 7489287
and b654e19, respectively.  The patch applied here is the exact same
logic, but the surrounding code changed slightly since the hwloc v1.7
series, so the patch doesn't apply cleanly.

Refs trac:4550

This commit was SVN r31511.

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-23 21:36:38 +00:00
Mike Dubman
0cba0b95b8 OSHMEM: fortran profiling API added
for spec compliance 

fixed by Roman, reviewed by Igor/Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31510.
2014-04-23 18:56:37 +00:00
George Bosilca
024221f469 Initialize some fields (prevent valgrind complaints).
This commit was SVN r31503.
2014-04-23 13:38:30 +00:00
Mike Dubman
7c47aab927 OSHMEM: fix segv with new OFED
new OFED changed struct layout and static assignment caused segv.
detect struct new layout and use dynamic assignment

fixed by AlexM, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31502.
2014-04-23 11:38:44 +00:00
Mike Dubman
8e4cea59da OSHMEM: bug fix for hca selection from list
fixed by AlexM, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31501.
2014-04-23 11:32:52 +00:00
Jeff Squyres
87e6232e67 orterun.c: set an fd to be close-on-exec
Make sure the debugger attach fifo is marked as close-on-exec so that
children procs don't inherit it.  For example, if you salloc a SLURM
allocation and run "mpirun ..." in there (i.e., mpirun is running on
the head node, and launching on to back-end nodes), the forked srun's
will inherit this fd if it is still open.

Refs trac:4550

This commit was SVN r31499.

The following Trac tickets were found above:
  Ticket 4550 --> https://svn.open-mpi.org/trac/ompi/ticket/4550
2014-04-22 21:55:09 +00:00
Jeff Squyres
b65e7caa77 op_commutative.c: use ompi_op_is_commute(), not the expanded test
One more commit for this ticket... as pointed out by Giles, we have
ompi_op_is_commute().  We should use that instead of replicating the
logic for the test.

Refs trac:4548

This commit was SVN r31497.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 20:08:40 +00:00
Jeff Squyres
b0c4b1aa20 op_commutative.c: ...but we should check for MPI_OP_NULL
Refs trac:4548

This commit was SVN r31492.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 19:30:55 +00:00
Jeff Squyres
dba256cd6c op_commutative.c: don't check if the op is predefined or not
MPI_OP_COMMUTATIVE should work on all MPI_Op's -- regardless of
whether they are predefined or not.

Refs trac:4548.

This commit was SVN r31491.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 19:26:15 +00:00
Jeff Squyres
5d17628823 Add in an opal_output_verbose() so that we'll see the case where there
are no usNICs found.

Refs trac:4549

This commit was SVN r31489.

The following Trac tickets were found above:
  Ticket 4549 --> https://svn.open-mpi.org/trac/ompi/ticket/4549
2014-04-22 18:59:10 +00:00
Mike Dubman
a4990de055 mca: track external lib version (runtime/compiletime) for mca component
based on thread: http://www.open-mpi.org/community/lists/devel/2014/04/14505.php

Create mca parameter to track runtime/compiletime ext lib version for component.

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31487.
2014-04-22 18:02:26 +00:00
Mike Dubman
18f9a282d5 OSHMEM: fix clang warnings
fixed by Roman, reviewed by Miked

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31486.
2014-04-22 16:49:20 +00:00
Jeff Squyres
2e191d2e21 Sync with 1.8.1/1.8.x NEWS.
This commit was SVN r31485.
2014-04-22 15:19:44 +00:00
Jeff Squyres
63b7ef4103 orterun.1in: Document --allow-run-as-root option
Add some verbiage about how mpirun now defaults to disallowing running
as root, but you can use the --allow-run-as-root option to override
this default behavior.

Refs trac:4536

This commit was SVN r31477.

The following Trac tickets were found above:
  Ticket 4536 --> https://svn.open-mpi.org/trac/ompi/ticket/4536
2014-04-22 14:34:32 +00:00
George Bosilca
75cf79c783 Ahem ... Correctly implement most of the 3 arguments
operator in Open MPI. Creepy that it was not discovered earlier.

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31473.
2014-04-21 23:31:23 +00:00
George Bosilca
8d92231de3 Deprecated comment.
This commit was SVN r31472.
2014-04-21 23:30:05 +00:00
George Bosilca
6a65d27bcc Print the 3rd buffer for the MPI_Op.
This commit was SVN r31471.
2014-04-21 23:29:30 +00:00
Oscar Vega-Gisbert
296bc56241 Java: apply a patch which solves the ticket #4313
This commit was SVN r31470.
2014-04-21 21:44:25 +00:00
Jeff Squyres
ea4c916096 plm_slurm_module.c: don't leave the extra fd to /dev/null open
Prior to r29058, this same logic was in place (i.e., ensure that the
extra fd to /dev/null is closed).  It looks like it was accidentally
removed in the ORTE conversion to the state machine in r29058.

This ''might'' have something to do with many hangs that we're seeing
in Cisco MTT with jobs that exhibit failure (e.g., call MPI_ABORT)...?

cmr=v1.8.2:reviewer=rhc

This commit was SVN r31469.

The following SVN revision numbers were found above:
  r29058 --> open-mpi/ompi@a200e4f865
2014-04-21 20:09:15 +00:00
Jeff Squyres
a3acc49688 usnic_component.c: don't complain if there are no usNIC devices
cmr=v1.8.2:reviewer=dgoodell

This commit was SVN r31468.
2014-04-21 19:28:48 +00:00
George Bosilca
399c8b18d2 Fix a parameter check. Thanks Lisandro Dalcin for the bug report.
More info @ http://www.open-mpi.org/community/lists/devel/2014/04/14561.php

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31467.
2014-04-21 17:00:56 +00:00
George Bosilca
7f5314eed9 Fix the handling of the displacement array for HINDEXED_BLOCK
datatype creation.

This commit was SVN r31466.
2014-04-21 16:43:58 +00:00
MPI Team
fd79283431 Update git/hg ignore files
This commit was SVN r31465.
2014-04-21 10:19:37 +00:00
Oscar Vega-Gisbert
bbbc6b9100 README.JAVA.txt: explain the 'mca' parameter 'mpi_java_eager'
This commit was SVN r31464.
2014-04-20 14:35:03 +00:00
Mike Dubman
6f057e57ba MXM: enable on demand mapping for only MPI mxm context
fixed by Devender, reviewed by Yossi

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31463.
2014-04-20 09:15:37 +00:00
MPI Team
79fc284701 Update git/hg ignore files
This commit was SVN r31462.
2014-04-20 05:00:33 +00:00
Jeff Squyres
e06c509df6 Use -j8 to decrease the time necessary to create nightly tarballs
This commit was SVN r31460.
2014-04-19 15:47:32 +00:00
Jeff Squyres
69bb758bca ompi_config_pthreads.m4: fix to compile with Clang 3.4
Clang 3.4 static analysis is now smart enough that it refuses to
compile our POSIX threading tests because we simply passed 0 for
several arguments (the test is checking for the linker presence of
symbols, so the NULL arguments didn't matter).  Specifically, Clang's
anti-NULL compile-time checks now refuse to compile this bogus code.
Hence, these 2 configure test codes now have real variables and
pointers so that clang will compile it properly.

Without this fix, configure determines that there is no POSIX
threading support, and the osc/sm component fails to compile (which is
a different defect I'll be filing shortly).  As such, we need this fix
in 1.8.1.

Also, change from the deprecated AC_TRY_LINK to AC_LINK_IFELSE.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31458.
2014-04-19 13:13:06 +00:00
Jeff Squyres
a28d7af262 Remove set-but-unused variable.
This commit was SVN r31457.
2014-04-19 12:51:51 +00:00
Jeff Squyres
10e2137b97 mpi_f08 fixes from Craig's review:
* Superfluous use of MPI_User_function in comm_create_keyval_f08.F90
* Missed adding "value" keyword to function pointer arguments in pmpi
  C interfaces

Submitted by Craig, reviewed by Jeff.

Refs trac:4512

This commit was SVN r31455.

The following Trac tickets were found above:
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-19 12:06:24 +00:00
Oscar Vega-Gisbert
f1133e2520 Java: initialize free list to only 2 buffers
This commit was SVN r31454.
2014-04-19 12:03:52 +00:00
Jeff Squyres
d5b77094fd Update svn:ignore to no longer ignore oshmem_config.h or pshmem.h
Refs trac:4543

This commit was SVN r31453.

The following Trac tickets were found above:
  Ticket 4543 --> https://svn.open-mpi.org/trac/ompi/ticket/4543
2014-04-19 12:02:18 +00:00
Oscar Vega-Gisbert
19803d6605 Java - neighborhood collective communication: get buffers according topology information
This commit was SVN r31452.
2014-04-19 11:12:38 +00:00
Mike Dubman
471652f2bf OSHMEM: some autogenerated files should be static
fixed by Roman, reviewed by Igor/Mike

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31451.
2014-04-19 05:23:04 +00:00
Mike Dubman
faaaac3194 OSHMEM: compilation fix for pathscale 5.0 and pshmem API
fixed by Roman, reviewed by Igor/Mike

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31450.
2014-04-19 05:09:07 +00:00
Mike Dubman
daaf1d441d OSHMEM: added bunch of examples according to SPEC 1.0
fixed by Roman, reviewed by Igor/Mike

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31449.
2014-04-19 05:03:44 +00:00
Jeff Squyres
3a8d2a0421 Sync with 1.8 branch NEWS
This commit was SVN r31446.
2014-04-19 00:31:34 +00:00
Jeff Squyres
1e500d7b37 Sync with v1.8 README
This commit was SVN r31444.
2014-04-19 00:30:38 +00:00
Jeff Squyres
38a27b858d Protect for the CLEANUP case where tmp hasn't been set yet
Refs trac:4536

This commit was SVN r31438.

The following Trac tickets were found above:
  Ticket 4536 --> https://svn.open-mpi.org/trac/ompi/ticket/4536
2014-04-18 23:34:53 +00:00