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Jeff Squyres
02aa36f2e5 ORTE defaults to killing the entire job when any process exits with a
nonzero status (we polled other MPI implementations since one one in
the OMPI community had a concrete opinion on what behavior to do here
-- all other MPI's seem to adhere to this behavior, too).

This commit adds an MCA parameter that allows us to tell ORTE to
''not'' kill jobs when a process exits with a status of 77, meaning
the GNU testing standard of "this test was skipped".  In all the OMPI
tests, all procs will either return 77 or not.  So if they all return
77, mpirun won't consider it an error, but will still return an exit
status of 77 (so that MTT can know that the test was cleanly skipped).

This commit was SVN r26413.
2012-05-08 21:49:05 +00:00
Jeff Squyres
c00d1d4f91 Add note that --bind-to-socket does not work on some Linux kernels for
POWER6 and POWER7 systems.  

This is still an unresolved issue; the Linux kernel does not expose
enough (correct) information for OMPI to be able to do anything
rational.  IBM is working on it.

This commit was SVN r26410.
2012-05-08 21:27:36 +00:00
Mike Dubman
cd17fee9a8 performance fix: openib use memalign for malloc
This commit was SVN r26409.
2012-05-08 20:42:09 +00:00
Jeff Squyres
3928a1ea42 Add missing AC_MSG_CHECKING (i.e., we were seeing a result message
without a corresponding "checking" message)

This commit was SVN r26408.
2012-05-08 17:20:09 +00:00
Jeff Squyres
e35ca05917 * Update svn:ignore to ignore example program
* Add "example" executable to CLEANFILES

This commit was SVN r26407.
2012-05-08 14:59:14 +00:00
Ralph Castain
84d031d6c1 Add daemon object to job array after creation
This commit was SVN r26406.
2012-05-08 13:39:20 +00:00
Ralph Castain
70d4f14be3 Add affinity extension to platform file
This commit was SVN r26404.
2012-05-08 04:00:05 +00:00
Ralph Castain
70a106fa71 Fix binding on remote nodes - need to pass the binding bitmap!
This commit was SVN r26403.
2012-05-08 03:52:39 +00:00
Nathan Hjelm
903f9fac09 ugni: fixed buffered sends and code cleanup
This commit was SVN r26401.
2012-05-07 17:23:06 +00:00
Nathan Hjelm
49eda71ca0 ugni: fix invalid parameter with opal_pointer_array_init
This commit was SVN r26400.
2012-05-07 17:22:55 +00:00
Nathan Hjelm
584c457352 ugni: update smsg defaults and add parameter to control local completion queue size
This commit was SVN r26399.
2012-05-07 17:22:49 +00:00
Nathan Hjelm
bfcf67391a ugni: set fragment id from opal_pointer_array_add
This commit was SVN r26398.
2012-05-07 17:22:42 +00:00
Nathan Hjelm
b3dc726e9d ugni: don't create completion queues until add_procs
This commit was SVN r26397.
2012-05-07 17:22:35 +00:00
Nathan Hjelm
0e48ea1f65 vader: remove #include of headers that no longer exist
This commit was SVN r26396.
2012-05-07 17:22:28 +00:00
Nathan Hjelm
a32d4c648d ob1: rewind convertor after failed send
This commit was SVN r26395.
2012-05-07 17:22:22 +00:00
Nathan Hjelm
b94e7af5c8 LANL: update XE-6 platform files
This commit was SVN r26394.
2012-05-07 17:22:14 +00:00
Jeff Squyres
43f3332929 Add an OMPI_Affinity_str() example program.
This commit was SVN r26393.
2012-05-07 15:19:23 +00:00
Jeff Squyres
a6d5654623 Update README and NEWS to reflect that carto, maffinity, and paffinity
are gone.

This commit was SVN r26392.
2012-05-07 14:58:59 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Mike Dubman
1b475523de add support for FDR speed
This commit was SVN r26385.
2012-05-06 05:53:05 +00:00
Ralph Castain
44b8608f0a Convert debug to verbose
This commit was SVN r26384.
2012-05-05 17:46:10 +00:00
Ralph Castain
96bfeb591c Ensure flag is passed to remote daemons
This commit was SVN r26383.
2012-05-03 22:31:25 +00:00
Ralph Castain
45fee2b491 Resolve the case where only the HNP is in the system (i.e., single-node operation)
This commit was SVN r26382.
2012-05-03 18:00:01 +00:00
Ralph Castain
c352ca36c2 Minor cleanup
This commit was SVN r26381.
2012-05-02 21:23:37 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
40c2fc5f55 Update the tests, add a couple
This commit was SVN r26379.
2012-05-02 19:00:05 +00:00
Ralph Castain
c5da4f24d7 Fix stupid singletons - get the pidmap message correct
This commit was SVN r26378.
2012-05-02 17:48:02 +00:00
Jeff Squyres
b5f4dd3fce Skip some more common files.
This commit was SVN r26377.
2012-05-02 13:05:37 +00:00
Jeff Squyres
8d87f591ca * Add bullets for 1.6
* Add a few items in the "not on a release branch" yet section

This commit was SVN r26374.
2012-05-02 12:59:32 +00:00
Nathan Hjelm
b6ae288a59 fix segfault when pml direct enabled
This commit was SVN r26371.
2012-05-01 23:12:41 +00:00
Ralph Castain
8f7bf3344a Update test
This commit was SVN r26370.
2012-05-01 18:38:44 +00:00
Ralph Castain
4542070cf2 Add event priority inversion test
This commit was SVN r26369.
2012-05-01 16:42:22 +00:00
Ralph Castain
a8db2fc95f Add procs to each node's map on the daemons
This commit was SVN r26368.
2012-05-01 16:41:35 +00:00
Ralph Castain
a927318ea1 Add -N option as synonym for "npernode"
This commit was SVN r26367.
2012-05-01 16:18:14 +00:00
Brian Barrett
0ae2277796 Add a backoff mechanism for re-establishing communication
This commit was SVN r26366.
2012-05-01 15:53:00 +00:00
Brian Barrett
74ade8b181 need to order the pending list before we restart
This commit was SVN r26365.
2012-04-30 23:06:00 +00:00
Brian Barrett
5dec52af8d remove some now unneeded debugging
This commit was SVN r26364.
2012-04-30 22:50:52 +00:00
Brian Barrett
c654ee6afc * Use triggered operations for restart barrier as well
This commit was SVN r26363.
2012-04-30 22:48:10 +00:00
Brian Barrett
91a9973bde * Make flow control on by default
* Move alarm code back into a triggered operation

This commit was SVN r26362.
2012-04-30 22:25:40 +00:00
Jeff Squyres
c30d1ef0df Patch from Evan Clinton, reviewed by Leif Lindholm, for supporting
ARM5 and ARM6.

This commit was SVN r26361.
2012-04-30 20:49:55 +00:00
Ralph Castain
9f724db182 Remove duplicate event assignment
This commit was SVN r26360.
2012-04-30 16:06:20 +00:00
Ralph Castain
289f9f41ec From long-term discussions, have the daemons use the node_t and proc_t structs and arrays instead of the pidmap and nidmap arrays. Sets the stage for future work.
This commit was SVN r26359.
2012-04-29 00:10:01 +00:00
Ralph Castain
47a5e30095 Ensure debug output levels if we are debugging
This commit was SVN r26358.
2012-04-29 00:03:28 +00:00
Jeff Squyres
a712fc4649 More Fortran-oriented typos / fixes in the script wrapper compiler
This commit was SVN r26357.
2012-04-27 21:20:24 +00:00
Brian Barrett
e6a0a1cf8a * Make sure to release all resources on failed send
* Avoid triggered ops until we get everything debugged
* Simplify flowctl interface a bit

This commit was SVN r26356.
2012-04-27 21:11:01 +00:00
Jeff Squyres
fff1612c04 * Forgot to update ompi-fort.pc.in
* Remove unused f77 reference in the script wrapper compiler

This commit was SVN r26355.
2012-04-27 20:05:09 +00:00
Jeff Squyres
80fa7cba29 Update VT for the new Fortran wrapper compiler nomenclature
This commit was SVN r26354.
2012-04-27 19:51:18 +00:00
Jeff Squyres
5efdfdfa09 * Make mpif77 and mpif90 be sym links to mpifort, just to drive the
point home that they're deprecated
 * Similarly, make mpif77-wrapper-data.txt be a sym link to
   mpifirt-wrapper-data.txt (ditto with mpif90)
 * Make new mpif77.1 and mpif90.1 man pages that say that they're
   deprecated; use mpifort instead

This commit was SVN r26353.
2012-04-27 19:35:23 +00:00
Ralph Castain
f3e3704c9e Per request from Brian, enable mapping of stddiag output (output from opal_output calls) to stderr of the local process. This allows you to obtain that output in a local window (for example, when using xterm for each process) instead of having it automatically forwarded to mpirun. Turn this on automatically whenever someone uses the -xterm option, and to be set manually using the orte_map_stddiag_to_stderr mca param.
This commit was SVN r26352.
2012-04-27 14:39:34 +00:00
Jeff Squyres
46f47e08b6 Remove typo/extra brackets and parens.
This commit was SVN r26351.
2012-04-27 13:48:43 +00:00