Take another shot at untangling the spaghetti
orterun: fix for command line parsing
orte-submit calls opal_init_util () before parsing out MCA command line
options (-mca, -am, etc). This prevents mpirun from setting opal MCA
variables for some frameworks as well as the MCA base. This is because
when a framework is opened all of its variables are set to read-only.
Eventually we want to lift this restriction on some MCA variables but
since -mca is affected we must parse out the MCA command line options
before opal_init_util(). This commit fixes the bug by adding a new
option to opal_cmd_line_parse (ignore unknown option) so orte-submit
can pre-parse the command line for MCA options.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
Minor cleanups to avoid releasing/recreating the cmd line
Remove contrib/windows/
Merge hwlocXYZ/hwloc/README-ompi.txt back into hwlocXYZ/README-ompi.txt instead of having both.
Add README.txt in new automake-required directory contrib/systemd/
Keep the following patches applied since they are not in 1.11.3
linux: actually enable libudev based on the result of AC_CHECK_LIB
(cherry picked from open-mpi/hwloc@9549fd59af)
configure: check the actual may_alias syntax that we use
(cherry picked from open-mpi/hwloc@0ab7af5e90)
This commit fixes several bugs in the registration cache code:
- Fix a programming error in the grdma invalidation function that can
cause an infinite loop if more than 100 registrations are
associated with a munmapped region. This happens because the
mca_rcache_base_vma_find_all function returns the same 100
registrations on each call. This has been fixed by adding an
iterate function to the vma tree interface.
- Always obtain the vma lock when needed. This is required because
there may be other threads in the system even if
opal_using_threads() is false. Additionally, since it is safe to do
so (the vma lock is recursive) the vma interface has been made
thread safe.
- Avoid calling free() while holding a lock. This avoids race
conditions with locks held outside the Open MPI code.
Fixesopen-mpi/ompi#1654.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Update external as well
Revise the change: we still need the MPI_Barrier in MPI_Finalize when we use a blocking fence, but do use the "lazy" wait for completion. Replace the direct logic in MPI_Init with a cleaner macro
WRAPPER_EXTRA flags are checked *before* the POST_CONFIG macro is
invoked. So set them in the main CONFIG macro.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
This commit adds an additional check for 64-bit atomic support for __sync
builtins. If 64-bit support is not available the opal_atomic_*_64 atomics
are disabled.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
xlc 13.1.0 crashes because of our may_alias attributes in nolibxml.c
on Power7. libxml.c and nolibxml.c are the only may_alias users for now,
so change our configure check to match the actual code using it.
Thanks to Paul Hargrove for reporting and debugging the issue,
and providing the patch.
https://www.open-mpi.org/community/lists/devel/2016/05/18918.php
(cherry picked from open-mpi/hwloc@0ab7af5e90)
Per discussion on the mailing list and with IBM, remove the AIX timer
code (since AIX is no longer supported).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
This commit disables the linux patcher component due to a limitation
in loader patching. While this component is effective in patching
calls made within Open MPI and by the application it fails to hook
calls made within glibc. This means the munmap call made by free is
not correctly hooked. Until this problem can be resolved this
component will remain disabled. If it can't be resolved this component
should probably be removed.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The table of contents (TOC) code only appears to only apply to
ppc64. The code was incorrectly assuming the existence of the TOC on
ppc32. This commit updates the necessary code to only apply to ppc64.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes a compile/link issue caused by vader. The vader btl
was using OPAL_THREAD_ADD64 to increment a counter which may not be
available on 32-bit systems. Changed to use OPAL_THREAD_ADD_SIZE_T
which will be 64-bit or 32-bit depending on the system.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
ebx can not be clobbered when using -fPIC so save and restore the
register instead of allowing it to be clobbered.
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
instead of doing AC_CHECK_HEADERS+AC_CHECK_LIB and only using the result of the former.
Thanks to Paul Hargrove for reporting the issue (OMPI build with -m32).
(cherry picked from open-mpi/hwloc@9549fd59af)
This commit fixes a compilation issue with some versions of exp
verbs. In some cases struct ibv_exp_device_attr does not have either
the exp_atom or exp_atomic_cap fields. It is fine to drop one check
and fall back to the non-exp attribute check on the other.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
Add a feature check for clflush before trying to use the clflush
instruction. As far as I can tell there is no equivalent before the
SSE2 instruction set.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The function signature of mremap on BSD (NetBSD, FreeBSD) differs from
the linux version. Added support for the BSD style of mremap.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes a compile error when the system has mremap but not
MREMAP_FIXED. In this case we do not care about the value of
new_address as the argument does not exist.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
In some rare cases when a process receives the connect ack while
locally updating the peer endpoint structure, we could drop the
incomming connect ack due to the fact that the send handler is
protected with a try lock (on the endpoint) and our initial send
event was not persistent. Making the send event persistent solves
all issues.
Rather than have a stub function for the pmix fence_nb
operation, just set to NULL. Causes fewer problems.
Fixes#1597Fixes#1527
Signed-off-by: hppritcha <howardp@lanl.gov>
This commit fixes a race between a thread calling the tcp btl's
add_procs and a thread processing an incomming connection. The race
occured because the add_procs thread adds a newly created proc object
to the hash table *before* the object is fully initialized. The
connection thread then attempts to use the object before the endpoints
array on the object has beeen allocation. The fix is to only add the
proc to the hash table after it has been completely initialized.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This commit fixes an error in the failure path of leave_pinned. When
the rcache tries to enable leave_pinned but leave_pinned was not
specifically requested (opal_leave_pinned == -1) the code was
erroneously printing an error and returning NULL.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
The opal_mem_hooks_release_hook does not have const on the pointer
(though it probably should). This commit eliminates a warning by
casting away the const until opal_mem_hooks_release_hook is updated to
use const.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
This is complicated stuff: add some comments so that future
maintainers have some rationale to understand the way things have been
done.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Define OPAL_MAXHOSTNAMELEN to be either:
(MAXHOSTNAMELEN + 1) or
(limits.h:HOST_NAME_MAX + 1) or
(255 + 1)
For pmix code, define above using PMIX_MAXHOSTNAMELEN.
Fixup opal layer to use the new max.
Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
The math for checking the number of QPs and CQs per usNIC/VF was
incorrect, allowing you to run MPI processes even when usNICs (i.e.,
VIC VFs) had fewer QPs and CQs than were necessary. This led to a
confusing error later when fi_enable(3) failed (because we lazily
create QPs). Fixing the math here ensure that we actually print a
helpful error message telling the user specifically what is wrong.
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
The heterogeneous code need to gracefully handly the contiguous
datatype loops in order to have the "#if 0" code path enabled again.
This is a performance issue (the correctness is guaranteed by the
current code).
These macros should really be named OPAL_SUMMARY_*; they're used in
all projects, and therefore should be in the lowest later project (OPAL).
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
Fix CID 1358512: Error handling issues (NEGATIVE_RETURNS):
C libraries usually handle read (-1, ...) fine but it is safer to
avoid calling read with a negative handle. Added negative file
descriptor check.
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
