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openmpi/ompi/mca/coll/sm/coll_sm_reduce.c

568 строки
22 KiB
C
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/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2014 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2009-2013 Cisco Systems, Inc. All rights reserved.
* $COPYRIGHT$
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*
* Additional copyrights may follow
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*
* $HEADER$
*/
#include "ompi_config.h"
#include <string.h>
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
#include "opal/datatype/opal_convertor.h"
#include "opal/sys/atomic.h"
#include "ompi/constants.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/op/op.h"
#include "coll_sm.h"
/*
* Local functions
*/
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static int reduce_inorder(void *sbuf, void* rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module);
#define WANT_REDUCE_NO_ORDER 0
#if WANT_REDUCE_NO_ORDER
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static int reduce_no_order(void *sbuf, void* rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module);
#endif
/*
* Useful utility routine
*/
#if !defined(min)
static inline int min(int a, int b)
{
return (a < b) ? a : b;
}
#endif
/**
* Shared memory reduction.
*
* Simply farms out to the associative or non-associative functions.
*/
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int mca_coll_sm_reduce_intra(void *sbuf, void* rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
size_t size;
mca_coll_sm_module_t *sm_module = (mca_coll_sm_module_t*) module;
/* There are several possibilities:
*
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
* 0. If the datatype is larger than a segment, fall back to
* underlying module
* 1. If the op is user-defined, use the strict order
* 2. If the op is intrinsic:
* a. If the op is float-associative, use the unordered
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
* b. If the op is not float-associative:
* i. if the data is floating point, use the strict order
* ii. if the data is not floating point, use the unordered
*/
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(dtype, &size);
if ((int)size > mca_coll_sm_component.sm_control_size) {
return sm_module->previous_reduce(sbuf, rbuf, count,
dtype, op, root, comm,
sm_module->previous_reduce_module);
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}
#if WANT_REDUCE_NO_ORDER
else {
/* Lazily enable the module the first time we invoke a
collective on it */
if (!sm_module->enabled) {
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if (OMPI_SUCCESS !=
(ret = ompi_coll_sm_lazy_enable(module, comm))) {
return ret;
}
}
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if (!ompi_op_is_intrinsic(op) ||
(ompi_op_is_intrinsic(op) && !ompi_op_is_float_assoc(op) &&
0 != (dtype->flags & OMPI_DATATYPE_FLAG_DATA_FLOAT))) {
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return reduce_inorder(sbuf, rbuf, count, dtype, op,
root, comm, module);
} else {
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return reduce_no_order(sbuf, rbuf, count, dtype, op,
root, comm, module);
}
}
#else
else {
/* Lazily enable the module the first time we invoke a
collective on it */
if (!sm_module->enabled) {
int ret;
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if (OMPI_SUCCESS !=
(ret = ompi_coll_sm_lazy_enable(module, comm))) {
return ret;
}
}
return reduce_inorder(sbuf, rbuf, count, dtype, op, root, comm, module);
}
#endif
}
/**
* In-order shared memory reduction.
*
* This function performs the reduction in order -- combining elements
* starting with (0 operation 1), then (result operation 2), then
* (result operation 3), etc.
*
* Root's algorithm:
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*
* If our datatype is "friendly" (i.e., the representation of the
* buffer is the same packed as it is unpacked), then the root doesn't
* need a temporary buffer -- we can combine the operands directly
* from the shared memory segments to the root's rbuf. Otherwise, we
* need a receive convertor and receive each fragment into a temporary
* buffer where we can combine that operan with the root's rbuf.
*
* In general, there are two loops:
*
* 1. loop over all fragments (which must be done in units of an
* integer number of datatypes -- remember that if this function is
* called, we know that the datattype is smaller than the max size of
* a fragment, so this is definitely possible)
*
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* 2. loop over all the processes -- 0 to (comm_size-1).
* For process 0:
* - if the root==0, copy the *entire* buffer (i.e., don't copy
* fragment by fragment -- might as well copy the entire thing) the
* first time through the algorithm, and no-op every other time
* - else, copy from the shmem fragment to the out buffer
* For all other proceses:
* - if root==i, combine the relevant fragment from the sbuf to the
* relevant fragment on the rbuf
* - else, if the datatype is friendly, combine relevant fragment from
* the shmem segment to the relevant fragment in the rbuf. Otherwise,
* use the convertor to copy the fragment out of shmem into a temp
* buffer and do the combination from there to the rbuf.
*
* If we don't have a friendly datatype, then free the temporary
* buffer at the end.
*/
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
2015-06-24 06:59:57 +03:00
static int reduce_inorder(void *sbuf, void* rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
struct iovec iov;
mca_coll_sm_module_t *sm_module = (mca_coll_sm_module_t*) module;
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
mca_coll_sm_comm_t *data = sm_module->sm_comm_data;
int ret, rank, size;
int flag_num, segment_num, max_segment_num;
size_t total_size, max_data, bytes;
mca_coll_sm_in_use_flag_t *flag;
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
mca_coll_sm_data_index_t *index;
size_t ddt_size;
size_t segment_ddt_count, segment_ddt_bytes, zero = 0;
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
ptrdiff_t true_lb, true_extent, lb, extent;
/* Setup some identities */
rank = ompi_comm_rank(comm);
size = ompi_comm_size(comm);
/* Figure out how much we should have the convertor copy. We need
to have it be in units of a datatype -- i.e., we only want to
copy a whole datatype worth of data or none at all (we've
already guaranteed above that the datatype is not larger than a
segment, so we'll at least get 1). */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* ddt_size is the packed size (e.g., MPI_SHORT_INT is 6) */
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
ompi_datatype_type_size(dtype, &ddt_size);
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* extent is from lb to ub (e.g., MPI_SHORT_INT is 8) */
ompi_datatype_get_extent(dtype, &lb, &extent);
/* true_extent is extent of actual type map, ignoring lb and ub
(e.g., MPI_SHORT_INT is 8) */
ompi_datatype_get_true_extent(dtype, &true_lb, &true_extent);
segment_ddt_count = mca_coll_sm_component.sm_fragment_size / ddt_size;
iov.iov_len = segment_ddt_bytes = segment_ddt_count * ddt_size;
total_size = ddt_size * count;
bytes = 0;
/* Only have one top-level decision as to whether I'm the root or
not. Do this at the slight expense of repeating a little logic
-- but it's better than a conditional branch in every loop
iteration. */
/*********************************************************************
* Root
*********************************************************************/
2015-06-24 06:59:57 +03:00
if (root == rank) {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
opal_convertor_t rtb_convertor, rbuf_convertor;
char *reduce_temp_buffer, *free_buffer, *reduce_target;
char *inplace_temp;
int peer;
size_t count_left = (size_t)count;
int frag_num = 0;
bool first_operation = true;
/* If the datatype is the same packed as it is unpacked, we
can save a memory copy and just do the reduction operation
directly from the shared memory segment. However, if the
representation is not the same, then we need to get a
receive convertor and a temporary buffer to receive
into. */
2015-06-24 06:59:57 +03:00
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
2009-07-13 08:56:31 +04:00
if (ompi_datatype_is_contiguous_memory_layout(dtype, count)) {
reduce_temp_buffer = free_buffer = NULL;
} else {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* When we have a non-contiguous datatype, we need one or
* two convertors:
*
* rtb_convertor: unpacking from the shmem to the
* reduce_temp_buffer (where we can then apply the
* reduction).
*
* rbuf_convertor: unpacking from the shmem directly to the
* rbuf (no need to go to the reduce_temp_buffer first and
* then apply the reduction -- just copy straight to the
* target buffer).
*/
OBJ_CONSTRUCT(&rtb_convertor, opal_convertor_t);
OBJ_CONSTRUCT(&rbuf_convertor, opal_convertor_t);
/* See lengthy comment in coll basic reduce about
explanation for how to malloc the extra buffer. Note
that we do not need a buffer big enough to hold "count"
instances of the datatype (i.e., big enough to hold the
entire user buffer) -- we only need to be able to hold
"segment_ddt_count" instances (i.e., the number of
instances that can be held in a single fragment) */
2015-06-24 06:59:57 +03:00
free_buffer = (char*)malloc(true_extent +
(segment_ddt_count - 1) * extent);
if (NULL == free_buffer) {
return OMPI_ERR_OUT_OF_RESOURCE;
}
reduce_temp_buffer = free_buffer - true_lb;
2015-06-24 06:59:57 +03:00
/* Trickery here: we use a potentially smaller count than
the user count -- use the largest count that is <=
user's count that will fit within a single segment. */
2015-06-24 06:59:57 +03:00
if (OMPI_SUCCESS !=
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
(ret = opal_convertor_copy_and_prepare_for_recv(
ompi_mpi_local_convertor,
&(dtype->super),
2015-06-24 06:59:57 +03:00
segment_ddt_count,
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
reduce_temp_buffer,
0,
&rtb_convertor))) {
free(free_buffer);
return ret;
}
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* See if we need the rbuf_convertor */
if (size - 1 != rank) {
2015-06-24 06:59:57 +03:00
if (OMPI_SUCCESS !=
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
(ret = opal_convertor_copy_and_prepare_for_recv(
ompi_mpi_local_convertor,
&(dtype->super),
2015-06-24 06:59:57 +03:00
count,
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
rbuf,
0,
&rbuf_convertor))) {
free(free_buffer);
return ret;
}
}
}
/* If we're a) doing MPI_IN_PLACE (which means we're the root
-- wouldn't have gotten down here with MPI_IN_PLACE if we
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
weren't the root), and b) we're not rank (size-1), then we
need to copy the rbuf into a temporary buffer and use that
as the sbuf */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
if (MPI_IN_PLACE == sbuf && (size - 1) != rank) {
inplace_temp = (char*)malloc(true_extent + (count - 1) * extent);
if (NULL == inplace_temp) {
if (NULL != free_buffer) {
free(free_buffer);
}
return OMPI_ERR_OUT_OF_RESOURCE;
}
sbuf = inplace_temp - true_lb;
ompi_datatype_copy_content_same_ddt(dtype, count, (char *) sbuf, (char *) rbuf);
} else {
inplace_temp = NULL;
}
2015-06-24 06:59:57 +03:00
/* Main loop over receiving / reducing fragments */
do {
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flag_num = (data->mcb_operation_count %
mca_coll_sm_component.sm_comm_num_in_use_flags);
FLAG_SETUP(flag_num, flag, data);
FLAG_WAIT_FOR_IDLE(flag, reduce_root_flag_label);
FLAG_RETAIN(flag, size, data->mcb_operation_count);
++data->mcb_operation_count;
/* Loop over all the segments in this set */
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segment_num =
flag_num * mca_coll_sm_component.sm_segs_per_inuse_flag;
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max_segment_num =
(flag_num + 1) * mca_coll_sm_component.sm_segs_per_inuse_flag;
reduce_target = (((char*) rbuf) + (frag_num * extent * segment_ddt_count));
do {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* Note that all the other coll modules reduce from
process (size-1) to 0, so that's the order we'll do
it here. */
/* Process (size-1) is the root (special case) */
if (size - 1 == rank) {
/* If we're the root *and* the first process to be
combined *and* this is the first segment in the
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
entire algorithm, then just copy the whole sbuf
to rbuf. That way, we never need to copy from
my sbuf again (i.e., do the copy all at once
since all the data is local, and then don't
worry about it for the rest of the
algorithm) */
if (first_operation) {
first_operation = false;
if (MPI_IN_PLACE != sbuf) {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
ompi_datatype_copy_content_same_ddt(dtype, count,
reduce_target, (char*)sbuf);
}
}
2015-06-24 06:59:57 +03:00
}
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* Process (size-1) is not the root */
else {
/* Wait for the data to be copied into shmem, just
like any other non-root process */
index = &(data->mcb_data_index[segment_num]);
PARENT_WAIT_FOR_NOTIFY_SPECIFIC(size - 1, rank, index, max_data, reduce_root_parent_label1);
2015-06-24 06:59:57 +03:00
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* If the datatype is contiguous, just copy it
straight to the reduce_target */
if (NULL == free_buffer) {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
memcpy(reduce_target, ((char*)index->mcbmi_data) +
(size - 1) * mca_coll_sm_component.sm_fragment_size, max_data);
2015-06-24 06:59:57 +03:00
}
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* If the datatype is noncontiguous, use the
rbuf_convertor to unpack it straight to the
rbuf */
else {
max_data = segment_ddt_bytes;
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COPY_FRAGMENT_OUT(rbuf_convertor, size - 1, index,
iov, max_data);
}
}
/* Loop over all the remaining processes, receiving
and reducing them in order */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
for (peer = size - 2; peer >= 0; --peer) {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
/* Handle the case where the source is this
process (which, by definition, excludes the
sbuf_copied_to_rbuf case because that can
*only* happen when root==0). In this case, we
don't need to wait for the peer (i.e., me) to
copy into shmem -- just reduce directly from my
sbuf. */
if (rank == peer) {
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ompi_op_reduce(op,
((char *) sbuf) +
frag_num * extent * segment_ddt_count,
reduce_target,
min(count_left, segment_ddt_count),
dtype);
}
/* Now handle the case where the source is not
this process. Wait for the process to copy to
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
the segment into shmem. */
else {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
index = &(data->mcb_data_index[segment_num]);
2015-06-24 06:59:57 +03:00
PARENT_WAIT_FOR_NOTIFY_SPECIFIC(peer, rank,
index, max_data, reduce_root_parent_label2);
2015-06-24 06:59:57 +03:00
/* If we don't need an extra buffer, then do the
reduction operation on the fragment straight
from the shmem. */
2015-06-24 06:59:57 +03:00
if (NULL == free_buffer) {
ompi_op_reduce(op,
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(index->mcbmi_data +
(peer * mca_coll_sm_component.sm_fragment_size)),
2015-06-24 06:59:57 +03:00
reduce_target,
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
min(count_left, segment_ddt_count),
dtype);
}
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/* Otherwise, unpack the fragment to the temporary
buffer and then do the reduction from there */
2015-06-24 06:59:57 +03:00
else {
/* Unpack the fragment into my temporary
buffer */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
max_data = segment_ddt_bytes;
2015-06-24 06:59:57 +03:00
COPY_FRAGMENT_OUT(rtb_convertor, peer, index,
iov, max_data);
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
opal_convertor_set_position(&rtb_convertor, &zero);
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/* Do the reduction on this fragment */
ompi_op_reduce(op, reduce_temp_buffer,
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reduce_target,
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
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min(count_left, segment_ddt_count),
dtype);
}
} /* whether this process was me or not */
} /* loop over all proceses */
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/* We've iterated through all the processes -- now we
move on to the next segment */
count_left -= segment_ddt_count;
bytes += segment_ddt_bytes;
++segment_num;
++frag_num;
reduce_target += extent * segment_ddt_count;
} while (bytes < total_size && segment_num < max_segment_num);
/* Root is now done with this set of segments */
FLAG_RELEASE(flag);
} while (bytes < total_size);
/* Kill the convertor, if we had one */
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if (NULL != free_buffer) {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
OBJ_DESTRUCT(&rtb_convertor);
OBJ_DESTRUCT(&rbuf_convertor);
free(free_buffer);
}
if (NULL != inplace_temp) {
free(inplace_temp);
}
}
/*********************************************************************
* Non-root
*********************************************************************/
else {
/* Here we get a convertor for the full count that the user
provided (as opposed to the convertor that the root got) */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
opal_convertor_t sbuf_convertor;
OBJ_CONSTRUCT(&sbuf_convertor, opal_convertor_t);
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if (OMPI_SUCCESS !=
(ret =
- Split the datatype engine into two parts: an MPI specific part in OMPI and a language agnostic part in OPAL. The convertor is completely moved into OPAL. This offers several benefits as described in RFC http://www.open-mpi.org/community/lists/devel/2009/07/6387.php namely: - Fewer basic types (int* and float* types, boolean and wchar - Fixing naming scheme to ompi-nomenclature. - Usability outside of the ompi-layer. - Due to the fixed nature of simple opal types, their information is completely known at compile time and therefore constified - With fewer datatypes (22), the actual sizes of bit-field types may be reduced from 64 to 32 bits, allowing reorganizing the opal_datatype structure, eliminating holes and keeping data required in convertor (upon send/recv) in one cacheline... This has implications to the convertor-datastructure and other parts of the code. - Several performance tests have been run, the netpipe latency does not change with this patch on Linux/x86-64 on the smoky cluster. - Extensive tests have been done to verify correctness (no new regressions) using: 1. mpi_test_suite on linux/x86-64 using clean ompi-trunk and ompi-ddt: a. running both trunk and ompi-ddt resulted in no differences (except for MPI_SHORT_INT and MPI_TYPE_MIX_LB_UB do now run correctly). b. with --enable-memchecker and running under valgrind (one buglet when run with static found in test-suite, commited) 2. ibm testsuite on linux/x86-64 using clean ompi-trunk and ompi-ddt: all passed (except for the dynamic/ tests failed!! as trunk/MTT) 3. compilation and usage of HDF5 tests on Jaguar using PGI and PathScale compilers. 4. compilation and usage on Scicortex. - Please note, that for the heterogeneous case, (-m32 compiled binaries/ompi), neither ompi-trunk, nor ompi-ddt branch would successfully launch. This commit was SVN r21641.
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opal_convertor_copy_and_prepare_for_send(ompi_mpi_local_convertor,
&(dtype->super),
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count,
sbuf,
0,
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
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&sbuf_convertor))) {
return ret;
}
/* Loop over sending fragments to the root */
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do {
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flag_num = (data->mcb_operation_count %
mca_coll_sm_component.sm_comm_num_in_use_flags);
/* Wait for the root to mark this set of segments as
ours */
FLAG_SETUP(flag_num, flag, data);
FLAG_WAIT_FOR_OP(flag, data->mcb_operation_count, reduce_nonroot_flag_label);
++data->mcb_operation_count;
/* Loop over all the segments in this set */
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segment_num =
flag_num * mca_coll_sm_component.sm_segs_per_inuse_flag;
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max_segment_num =
(flag_num + 1) * mca_coll_sm_component.sm_segs_per_inuse_flag;
do {
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
index = &(data->mcb_data_index[segment_num]);
/* Copy from the user's buffer to my shared mem
segment */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
max_data = segment_ddt_bytes;
COPY_FRAGMENT_IN(sbuf_convertor, index, rank, iov, max_data);
bytes += max_data;
/* Wait for the write to absolutely complete */
opal_atomic_wmb();
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/* Tell my parent (always the reduction root -- we're
ignoring the mcb_tree parent/child relationships
here) that this fragment is ready */
CHILD_NOTIFY_PARENT(rank, root, index, max_data);
++segment_num;
} while (bytes < total_size && segment_num < max_segment_num);
/* We're finished with this set of segments */
FLAG_RELEASE(flag);
} while (bytes < total_size);
/* Kill the convertor */
Fixes trac:1988. The little bug that turned out to be huge. Yoinks. * Various cosmetic/style updates in the btl sm * Clean up concept of mpool module (I think that code was written way back when the concept of "modules" was fuzzy) * Bring over some old fixes from the /tmp/timattox-sm-coll/ tree to fix potential segv's when mmap'ed regions were at different addresses in different processes (thanks Tim!). * Change sm coll to no longer use mpool as its main source of shmem; rather, just mmap its own segment (because it's fixed size -- there was nothing to be gained by using mpool; shedding the use of mpool saved a lot of complexity in the sm coll setup). This effectively made Tim's fixes moot (because now everything is an offset into the mmap that is computed locally; there are no global pointers). :-) * Slightly updated common/sm to allow making mmap's for a specific set of procs (vs. ''all'' procs in the process). This potentially allows for same-host-inter-proc mmaps -- yay! * Fixed many, many things in the coll sm (particularly in reduce): * Fixed handling of MPI_IN_PLACE in reduce and allreduce * Fixed handling of non-contiguous datatypes in reduce * Changed the order of reductions to go from process (n-1)'s data to process 0's data, because that's how all other OMPI coll components work * Fixed lots of usage of ddt functions * When using a non-contiguous datatype, if the root process is not (n-1), now we used a 2nd convertor to copy from shmem to the rbuf (saves a memory copy vs. what was done before) * Lots and lots of little cleanups, clarifications, and minor optimizations (although still more could be done -- e.g., I think the use of write memory barriers is fairly sub-optimal; they could be ganged together at the root, for example) I'm marking this as "fixes trac:1988" and closing the ticket; if something is still broken, we can re-open the ticket. This commit was SVN r21967. The following Trac tickets were found above: Ticket 1988 --> https://svn.open-mpi.org/trac/ompi/ticket/1988
2009-09-15 04:25:21 +04:00
OBJ_DESTRUCT(&sbuf_convertor);
}
/* All done */
return OMPI_SUCCESS;
}
#if WANT_REDUCE_NO_ORDER
/**
* Unordered shared memory reduction.
*
* This function performs the reduction in whatever order the operands
* arrive.
*/
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static int reduce_no_order(void *sbuf, void* rbuf, int count,
struct ompi_datatype_t *dtype,
struct ompi_op_t *op,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
return OMPI_ERR_NOT_IMPLEMENTED;
}
#endif