8558185c85
This commit add the following methods. | Language-indep. notation | Java binding | | ------------------------ | ----------------------- | | MPI_WIN_GET_ERRHANDLER | mpi.Win.getErrhandler | | MPI_FILE_SET_ERRHANDLER | mpi.File.setErrhandler | | MPI_FILE_GET_ERRHANDLER | mpi.File.getErrhandler | | MPI_COMM_CALL_ERRHANDLER | mpi.Comm.callErrhandler | | MPI_FILE_CALL_ERRHANDLER | mpi.File.callErrhandler | | MPI_FILE_IREAD_AT_ALL | mpi.File.iReadAtAll | | MPI_FILE_IWRITE_AT_ALL | mpi.File.iWriteAtAll | | MPI_FILE_IREAD_ALL | mpi.File.iReadAll | | MPI_FILE_IWRITE_ALL | mpi.File.iWriteAll | | MPI_FILE_GET_ATOMICITY | mpi.File.getAtomicity | `MPI_FILE_I{READ,WRITE}(_AT)_ALL` routines are added in MPI-3.1. I don't know why other methods were missing. Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
746 строки
24 KiB
C
746 строки
24 KiB
C
/*
|
|
* Copyright (c) 2004-2007 The Trustees of Indiana University and Indiana
|
|
* University Research and Technology
|
|
* Corporation. All rights reserved.
|
|
* Copyright (c) 2004-2005 The University of Tennessee and The University
|
|
* of Tennessee Research Foundation. All rights
|
|
* reserved.
|
|
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
|
|
* University of Stuttgart. All rights reserved.
|
|
* Copyright (c) 2004-2005 The Regents of the University of California.
|
|
* All rights reserved.
|
|
* Copyright (c) 2016 Los Alamos National Security, LLC. All rights
|
|
* reserved.
|
|
* Copyright (c) 2017 FUJITSU LIMITED. All rights reserved.
|
|
* $COPYRIGHT$
|
|
*
|
|
* Additional copyrights may follow
|
|
*
|
|
* $HEADER$
|
|
*/
|
|
|
|
#include "ompi_config.h"
|
|
|
|
#include <stdlib.h>
|
|
#include <assert.h>
|
|
#ifdef HAVE_TARGETCONDITIONALS_H
|
|
#include <TargetConditionals.h>
|
|
#endif
|
|
|
|
#include "mpi.h"
|
|
#include "mpi_File.h"
|
|
#include "mpiJava.h"
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_open(
|
|
JNIEnv *env, jobject jthis, jlong comm,
|
|
jstring jfilename, jint amode, jlong info)
|
|
{
|
|
const char* filename = (*env)->GetStringUTFChars(env, jfilename, NULL);
|
|
MPI_File fh;
|
|
|
|
int rc = MPI_File_open((MPI_Comm)comm, (char*)filename,
|
|
amode, (MPI_Info)info, &fh);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
(*env)->ReleaseStringUTFChars(env, jfilename, filename);
|
|
return (jlong)fh;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_close(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_File file = (MPI_File)fh;
|
|
int rc = MPI_File_close(&file);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)file;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_delete(
|
|
JNIEnv *env, jclass clazz, jstring jfilename, jlong info)
|
|
{
|
|
const char* filename = (*env)->GetStringUTFChars(env, jfilename, NULL);
|
|
int rc = MPI_File_delete((char*)filename, (MPI_Info)info);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
(*env)->ReleaseStringUTFChars(env, jfilename, filename);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_setSize(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong size)
|
|
{
|
|
int rc = MPI_File_set_size((MPI_File)fh, (MPI_Offset)size);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_preallocate(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong size)
|
|
{
|
|
int rc = MPI_File_preallocate((MPI_File)fh, (MPI_Offset)size);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getSize(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Offset size;
|
|
int rc = MPI_File_get_size((MPI_File)fh, &size);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)size;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getGroup(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Group group;
|
|
int rc = MPI_File_get_group((MPI_File)fh, &group);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)group;
|
|
}
|
|
|
|
JNIEXPORT jint JNICALL Java_mpi_File_getAMode(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
int amode;
|
|
int rc = MPI_File_get_amode((MPI_File)fh, &amode);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return amode;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_setInfo(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong info)
|
|
{
|
|
int rc = MPI_File_set_info((MPI_File)fh, (MPI_Info)info);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getInfo(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Info info;
|
|
int rc = MPI_File_get_info((MPI_File)fh, &info);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)info;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_setView(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong disp,
|
|
jlong etype, jlong filetype, jstring jdatarep, jlong info)
|
|
{
|
|
const char* datarep = (*env)->GetStringUTFChars(env, jdatarep, NULL);
|
|
|
|
int rc = MPI_File_set_view(
|
|
(MPI_File)fh, (MPI_Offset)disp, (MPI_Datatype)etype,
|
|
(MPI_Datatype)filetype, (char*)datarep, (MPI_Info)info);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
(*env)->ReleaseStringUTFChars(env, jdatarep, datarep);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAt(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong fileOffset,
|
|
jobject buf, jboolean db, jint off, jint count,
|
|
jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
|
|
int rc = MPI_File_read_at((MPI_File)fh, (MPI_Offset)fileOffset,
|
|
ptr, count, type, &status);
|
|
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAtAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong fileOffset,
|
|
jobject buf, jboolean db, jint off, jint count,
|
|
jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
|
|
int rc = MPI_File_read_at_all((MPI_File)fh, (MPI_Offset)fileOffset,
|
|
ptr, count, type, &status);
|
|
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAt(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong fileOffset,
|
|
jobject buf, jboolean db, jint off, jint count,
|
|
jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
|
|
int rc = MPI_File_write_at((MPI_File)fh, (MPI_Offset)fileOffset,
|
|
ptr, count, type, &status);
|
|
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAtAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong fileOffset,
|
|
jobject buf, jboolean db, jint off, jint count,
|
|
jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
|
|
int rc = MPI_File_write_at_all((MPI_File)fh, (MPI_Offset)fileOffset,
|
|
ptr, count, (MPI_Datatype)type, &status);
|
|
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iReadAt(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iread_at((MPI_File)fh, (MPI_Offset)offset,
|
|
ptr, count, (MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iReadAtAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iread_at_all((MPI_File)fh, (MPI_Offset)offset,
|
|
ptr, count, (MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iWriteAt(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iwrite_at((MPI_File)fh, (MPI_Offset)offset,
|
|
ptr, count, (MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iWriteAtAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iwrite_at_all((MPI_File)fh, (MPI_Offset)offset,
|
|
ptr, count, (MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_read(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
int rc = MPI_File_read((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
int rc = MPI_File_read_all((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_write(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
int rc = MPI_File_write((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAll(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
int rc = MPI_File_write_all((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iRead(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iread((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iReadAll(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iread_all((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iWrite(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iwrite((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iWriteAll(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iwrite_all((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_seek(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset, jint whence)
|
|
{
|
|
int rc = MPI_File_seek((MPI_File)fh, (MPI_Offset)offset, whence);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getPosition(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Offset offset;
|
|
int rc = MPI_File_get_position((MPI_File)fh, &offset);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)offset;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getByteOffset(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset)
|
|
{
|
|
MPI_Offset disp;
|
|
int rc = MPI_File_get_byte_offset((MPI_File)fh, (MPI_Offset)offset, &disp);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)disp;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readShared(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
int rc = MPI_File_read_shared((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeShared(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
int rc = MPI_File_write_shared((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iReadShared(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iread_shared((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_iWriteShared(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
MPI_Request request;
|
|
|
|
int rc = MPI_File_iwrite_shared((MPI_File)fh, ptr, count,
|
|
(MPI_Datatype)type, &request);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)request;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readOrdered(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getWritePtr(&ptr, &item, env, buf, db, count, type);
|
|
MPI_Status status;
|
|
int rc = MPI_File_read_ordered((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseWritePtr(ptr, item, env, buf, db, off, count, type, bType);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeOrdered(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jboolean db,
|
|
jint off, jint count, jlong jType, jint bType, jlongArray stat)
|
|
{
|
|
jboolean exception;
|
|
MPI_Datatype type = (MPI_Datatype)jType;
|
|
void *ptr;
|
|
ompi_java_buffer_t *item;
|
|
ompi_java_getReadPtr(&ptr, &item, env, buf, db, off, count, type, bType);
|
|
MPI_Status status;
|
|
int rc = MPI_File_write_ordered((MPI_File)fh, ptr, count, type, &status);
|
|
exception = ompi_java_exceptionCheck(env, rc);
|
|
ompi_java_releaseReadPtr(ptr, item, buf, db);
|
|
|
|
if(!exception)
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_seekShared(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset, jint whence)
|
|
{
|
|
int rc = MPI_File_seek_shared((MPI_File)fh, (MPI_Offset)offset, whence);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getPositionShared(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Offset offset;
|
|
int rc = MPI_File_get_position_shared((MPI_File)fh, &offset);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)offset;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAtAllBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong offset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_read_at_all_begin((MPI_File)fh, (MPI_Offset)offset,
|
|
ptr, count, (MPI_Datatype)type);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAtAllEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_read_at_all_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAtAllBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong fileOffset,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_write_at_all_begin((MPI_File)fh, (MPI_Offset)fileOffset,
|
|
ptr, count, (MPI_Datatype)type);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAtAllEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_write_at_all_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAllBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_read_all_begin(
|
|
(MPI_File)fh, ptr, count, (MPI_Datatype)type);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readAllEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_read_all_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAllBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_write_all_begin(
|
|
(MPI_File)fh, ptr, count, (MPI_Datatype)type);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeAllEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_write_all_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readOrderedBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_read_ordered_begin(
|
|
(MPI_File)fh, ptr, count, (MPI_Datatype)type);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_readOrderedEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_read_ordered_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeOrderedBegin(
|
|
JNIEnv *env, jobject jthis, jlong fh,
|
|
jobject buf, jint count, jlong type)
|
|
{
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
|
|
int rc = MPI_File_write_ordered_begin(
|
|
(MPI_File)fh, ptr, count, (MPI_Datatype)type);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_writeOrderedEnd(
|
|
JNIEnv *env, jobject jthis, jlong fh, jobject buf, jlongArray stat)
|
|
{
|
|
MPI_Status status;
|
|
void *ptr = (*env)->GetDirectBufferAddress(env, buf);
|
|
int rc = MPI_File_write_ordered_end((MPI_File)fh, ptr, &status);
|
|
|
|
if(!ompi_java_exceptionCheck(env, rc))
|
|
ompi_java_status_set(env, stat, &status);
|
|
}
|
|
|
|
JNIEXPORT jint JNICALL Java_mpi_File_getTypeExtent(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong type)
|
|
{
|
|
MPI_Aint extent;
|
|
|
|
int rc = MPI_File_get_type_extent(
|
|
(MPI_File)fh, (MPI_Datatype)type, &extent);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (int)extent;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_setAtomicity(
|
|
JNIEnv *env, jobject jthis, jlong fh, jboolean atomicity)
|
|
{
|
|
int rc = MPI_File_set_atomicity((MPI_File)fh, atomicity);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jboolean JNICALL Java_mpi_File_getAtomicity(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
int atomicity;
|
|
int rc = MPI_File_get_atomicity((MPI_File)fh, &atomicity);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return atomicity ? JNI_TRUE : JNI_FALSE;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_sync(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
int rc = MPI_File_sync((MPI_File)fh);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_setErrhandler(
|
|
JNIEnv *env, jobject jthis, jlong fh, jlong errhandler)
|
|
{
|
|
int rc = MPI_File_set_errhandler(
|
|
(MPI_File)fh, (MPI_Errhandler)errhandler);
|
|
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|
|
|
|
JNIEXPORT jlong JNICALL Java_mpi_File_getErrhandler(
|
|
JNIEnv *env, jobject jthis, jlong fh)
|
|
{
|
|
MPI_Errhandler errhandler;
|
|
int rc = MPI_File_get_errhandler((MPI_File)fh, &errhandler);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
return (jlong)errhandler;
|
|
}
|
|
|
|
JNIEXPORT void JNICALL Java_mpi_File_callErrhandler(
|
|
JNIEnv *env, jobject jthis, jlong fh, jint errorCode)
|
|
{
|
|
int rc = MPI_File_call_errhandler((MPI_File)fh, errorCode);
|
|
ompi_java_exceptionCheck(env, rc);
|
|
}
|