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openmpi/ompi/mca/coll/base/coll_base_scatter.c
Mikhail Kurnosov 22fa5a8a67 coll/base/scatter: replaces right skewed binomial tree (in order) with left skewed binomial tree
Current implementation of `coll/base/MPI_Scatter` is based on in-order binomial tree. This tree is right skewed and it provides good performance for a MPI_Gather operation. But for a MPI_Scatter operation left skewed binomial tree is effective.

Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2018-07-09 10:04:41 -06:00

278 строки
11 KiB
C

/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2017 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2013 Los Alamos National Security, LLC. All rights
* reserved.
* Copyright (c) 2015-2016 Research Organization for Information Science
* and Technology (RIST). All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "mpi.h"
#include "ompi/constants.h"
#include "ompi/datatype/ompi_datatype.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/pml/pml.h"
#include "ompi/mca/coll/base/coll_base_functions.h"
#include "coll_base_topo.h"
#include "coll_base_util.h"
/*
* ompi_coll_base_scatter_intra_binomial
*
* Function: Binomial tree algorithm for scatter
* Accepts: Same as MPI_Scatter
* Returns: MPI_SUCCESS or error code
*
* Time complexity: \alpha\log(p) + \beta*m((p-1)/p),
* where m = scount * comm_size, p = comm_size
*
* Memory requirements (per process):
* root process (root > 0): scount * comm_size * sdtype_size
* non-root, non-leaf process: rcount * comm_size * rdtype_size
*
* Examples:
* comm_size=8 comm_size=10 comm_size=12
* 0 0 0
* / | \ / / | \ / / \ \
* 4 2 1 8 4 2 1 8 4 2 1
* / | | / / | | / | / | |
* 6 5 3 9 6 5 3 10 9 6 5 3
* | | | |
* 7 7 11 7
*/
int
ompi_coll_base_scatter_intra_binomial(
const void *sbuf, int scount, struct ompi_datatype_t *sdtype,
void *rbuf, int rcount, struct ompi_datatype_t *rdtype,
int root, struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int line = -1, rank, vrank, size, err;
char *ptmp, *tempbuf = NULL;
MPI_Status status;
mca_coll_base_module_t *base_module = (mca_coll_base_module_t*)module;
mca_coll_base_comm_t *data = base_module->base_data;
ptrdiff_t sextent, rextent, ssize, rsize, sgap = 0, rgap = 0;
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
OPAL_OUTPUT((ompi_coll_base_framework.framework_output,
"coll:base:scatter_intra_binomial rank %d/%d", rank, size));
/* Create the binomial tree */
COLL_BASE_UPDATE_IN_ORDER_BMTREE(comm, base_module, root);
if (NULL == data->cached_in_order_bmtree) {
err = OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
}
ompi_coll_tree_t *bmtree = data->cached_in_order_bmtree;
vrank = (rank - root + size) % size;
ptmp = (char *)rbuf; /* by default suppose leaf nodes, just use rbuf */
if (rank == root) {
ompi_datatype_type_extent(sdtype, &sextent);
ssize = opal_datatype_span(&sdtype->super, (int64_t)scount * size, &sgap);
if (0 == root) {
/* root on 0, just use the send buffer */
ptmp = (char *)sbuf;
if (rbuf != MPI_IN_PLACE) {
/* local copy to rbuf */
err = ompi_datatype_sndrcv(sbuf, scount, sdtype,
rbuf, rcount, rdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
} else {
/* root is not on 0, allocate temp buffer for send */
tempbuf = (char *)malloc(ssize);
if (NULL == tempbuf) {
err = OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
}
ptmp = tempbuf - sgap;
/* and rotate data so they will eventually in the right place */
err = ompi_datatype_copy_content_same_ddt(sdtype, (ptrdiff_t)scount * (ptrdiff_t)(size - root),
ptmp, (char *) sbuf + sextent * (ptrdiff_t)root * (ptrdiff_t)scount);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
err = ompi_datatype_copy_content_same_ddt(sdtype, (ptrdiff_t)scount * (ptrdiff_t)root,
ptmp + sextent * (ptrdiff_t)scount * (ptrdiff_t)(size - root), (char *)sbuf);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
if (rbuf != MPI_IN_PLACE) {
/* local copy to rbuf */
err = ompi_datatype_sndrcv(ptmp, scount, sdtype,
rbuf, rcount, rdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
}
} else if (!(vrank % 2)) {
/* non-root, non-leaf nodes, allocate temp buffer for recv
* the most we need is rcount*size/2 */
ompi_datatype_type_extent(rdtype, &rextent);
rsize = opal_datatype_span(&rdtype->super, (int64_t)rcount * size, &rgap);
tempbuf = (char *)malloc(rsize / 2);
if (NULL == tempbuf) {
err = OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
}
ptmp = tempbuf - rgap;
sdtype = rdtype;
scount = rcount;
sextent = rextent;
}
int curr_count = (rank == root) ? scount * size : 0;
if (!(vrank % 2)) {
if (rank != root) {
/* recv from parent on non-root */
err = MCA_PML_CALL(recv(ptmp, (ptrdiff_t)rcount * (ptrdiff_t)size, rdtype, bmtree->tree_prev,
MCA_COLL_BASE_TAG_SCATTER, comm, &status));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
/* Get received count */
size_t rdtype_size;
ompi_datatype_type_size(rdtype, &rdtype_size);
curr_count = (int)(status._ucount / rdtype_size);
/* local copy to rbuf */
err = ompi_datatype_sndrcv(ptmp, scount, sdtype,
rbuf, rcount, rdtype);
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
/* send to children on all non-leaf */
for (int i = bmtree->tree_nextsize - 1; i >= 0; i--) {
/* figure out how much data I have to send to this child */
int vchild = (bmtree->tree_next[i] - root + size) % size;
int send_count = vchild - vrank;
if (send_count > size - vchild)
send_count = size - vchild;
send_count *= scount;
err = MCA_PML_CALL(send(ptmp + (ptrdiff_t)(curr_count - send_count) * sextent,
send_count, sdtype, bmtree->tree_next[i],
MCA_COLL_BASE_TAG_SCATTER,
MCA_PML_BASE_SEND_STANDARD, comm));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
curr_count -= send_count;
}
if (NULL != tempbuf)
free(tempbuf);
} else {
/* recv from parent on leaf nodes */
err = MCA_PML_CALL(recv(ptmp, rcount, rdtype, bmtree->tree_prev,
MCA_COLL_BASE_TAG_SCATTER, comm, &status));
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
}
return MPI_SUCCESS;
err_hndl:
if (NULL != tempbuf)
free(tempbuf);
OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "%s:%4d\tError occurred %d, rank %2d",
__FILE__, line, err, rank));
(void)line; // silence compiler warning
return err;
}
/*
* Linear functions are copied from the BASIC coll module
* they do not segment the message and are simple implementations
* but for some small number of nodes and/or small data sizes they
* are just as fast as base/tree based segmenting operations
* and as such may be selected by the decision functions
* These are copied into this module due to the way we select modules
* in V1. i.e. in V2 we will handle this differently and so will not
* have to duplicate code.
* JPG following the examples from other coll_base implementations. Dec06.
*/
/* copied function (with appropriate renaming) starts here */
/*
* scatter_intra
*
* Function: - basic scatter operation
* Accepts: - same arguments as MPI_Scatter()
* Returns: - MPI_SUCCESS or error code
*/
int
ompi_coll_base_scatter_intra_basic_linear(const void *sbuf, int scount,
struct ompi_datatype_t *sdtype,
void *rbuf, int rcount,
struct ompi_datatype_t *rdtype,
int root,
struct ompi_communicator_t *comm,
mca_coll_base_module_t *module)
{
int i, rank, size, err;
ptrdiff_t incr;
char *ptmp;
/* Initialize */
rank = ompi_comm_rank(comm);
size = ompi_comm_size(comm);
/* If not root, receive data. */
if (rank != root) {
err = MCA_PML_CALL(recv(rbuf, rcount, rdtype, root,
MCA_COLL_BASE_TAG_SCATTER,
comm, MPI_STATUS_IGNORE));
return err;
}
/* I am the root, loop sending data. */
err = ompi_datatype_type_extent(sdtype, &incr);
if (OMPI_SUCCESS != err) {
return OMPI_ERROR;
}
incr *= scount;
for (i = 0, ptmp = (char *) sbuf; i < size; ++i, ptmp += incr) {
/* simple optimization */
if (i == rank) {
if (MPI_IN_PLACE != rbuf) {
err =
ompi_datatype_sndrcv(ptmp, scount, sdtype, rbuf, rcount,
rdtype);
}
} else {
err = MCA_PML_CALL(send(ptmp, scount, sdtype, i,
MCA_COLL_BASE_TAG_SCATTER,
MCA_PML_BASE_SEND_STANDARD, comm));
}
if (MPI_SUCCESS != err) {
return err;
}
}
/* All done */
return MPI_SUCCESS;
}
/* copied function (with appropriate renaming) ends here */