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openmpi/ompi/mca/coll/tuned/coll_tuned_topo.c
Jeff Squyres e7ecd56bd2 This commit represents a bunch of work on a Mercurial side branch. As
such, the commit message back to the master SVN repository is fairly
long.

= ORTE Job-Level Output Messages =

Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):

 * orte_output(): (and corresponding friends ORTE_OUTPUT,
   orte_output_verbose, etc.)  This function sends the output directly
   to the HNP for processing as part of a job-specific output
   channel.  It supports all the same outputs as opal_output()
   (syslog, file, stdout, stderr), but for stdout/stderr, the output
   is sent to the HNP for processing and output.  More on this below.
 * orte_show_help(): This function is a drop-in-replacement for
   opal_show_help(), with two differences in functionality:
   1. the rendered text help message output is sent to the HNP for
      display (rather than outputting directly into the process' stderr
      stream)
   1. the HNP detects duplicate help messages and does not display them
      (so that you don't see the same error message N times, once from
      each of your N MPI processes); instead, it counts "new" instances
      of the help message and displays a message every ~5 seconds when
      there are new ones ("I got X new copies of the help message...")

opal_show_help and opal_output still exist, but they only output in
the current process.  The intent for the new orte_* functions is that
they can apply job-level intelligence to the output.  As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.

=== New code ===

For ORTE and OMPI programmers, here's what you need to do differently
in new code:

 * Do not include opal/util/show_help.h or opal/util/output.h.
   Instead, include orte/util/output.h (this one header file has
   declarations for both the orte_output() series of functions and
   orte_show_help()).
 * Effectively s/opal_output/orte_output/gi throughout your code.
   Note that orte_output_open() takes a slightly different argument
   list (as a way to pass data to the filtering stream -- see below),
   so you if explicitly call opal_output_open(), you'll need to
   slightly adapt to the new signature of orte_output_open().
 * Literally s/opal_show_help/orte_show_help/.  The function signature
   is identical.

=== Notes ===

 * orte_output'ing to stream 0 will do similar to what
   opal_output'ing did, so leaving a hard-coded "0" as the first
   argument is safe.
 * For systems that do not use ORTE's RML or the HNP, the effect of
   orte_output_* and orte_show_help will be identical to their opal
   counterparts (the additional information passed to
   orte_output_open() will be lost!).  Indeed, the orte_* functions
   simply become trivial wrappers to their opal_* counterparts.  Note
   that we have not tested this; the code is simple but it is quite
   possible that we mucked something up.

= Filter Framework =

Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr.  The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations.  The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc.  This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).

Filtering is not active by default.  Filter components must be
specifically requested, such as:

{{{
$ mpirun --mca filter xml ...
}}}

There can only be one filter component active.

= New MCA Parameters =

The new functionality described above introduces two new MCA
parameters:

 * '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
   help messages will be aggregated, as described above.  If set to 0,
   all help messages will be displayed, even if they are duplicates
   (i.e., the original behavior).
 * '''orte_base_show_output_recursions''': An MCA parameter to help
   debug one of the known issues, described below.  It is likely that
   this MCA parameter will disappear before v1.3 final.

= Known Issues =

 * The XML filter component is not complete.  The current output from
   this component is preliminary and not real XML.  A bit more work
   needs to be done to configure.m4 search for an appropriate XML
   library/link it in/use it at run time.
 * There are possible recursion loops in the orte_output() and
   orte_show_help() functions -- e.g., if RML send calls orte_output()
   or orte_show_help().  We have some ideas how to fix these, but
   figured that it was ok to commit before feature freeze with known
   issues.  The code currently contains sub-optimal workarounds so
   that this will not be a problem, but it would be good to actually
   solve the problem rather than have hackish workarounds before v1.3 final.

This commit was SVN r18434.
2008-05-13 20:00:55 +00:00

640 строки
18 KiB
C

/*
* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2005 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include "mpi.h"
#include "ompi/constants.h"
#include "ompi/datatype/datatype.h"
#include "ompi/communicator/communicator.h"
#include "ompi/mca/coll/coll.h"
#include "ompi/mca/coll/base/coll_tags.h"
#include "ompi/mca/pml/pml.h"
#include "coll_tuned.h"
#include "coll_tuned_topo.h"
/*
* Some static helpers.
*/
static int pown( int fanout, int num )
{
int j, p = 1;
if( num < 0 ) return 0;
if (1==num) return fanout;
if (2==fanout) {
return p<<num;
}
else {
for( j = 0; j < num; j++ ) { p*= fanout; }
}
return p;
}
static int calculate_level( int fanout, int rank )
{
int level, num;
if( rank < 0 ) return -1;
for( level = 0, num = 0; num <= rank; level++ ) {
num += pown(fanout, level);
}
return level-1;
}
static int calculate_num_nodes_up_to_level( int fanout, int level )
{
/* just use geometric progression formula for sum:
a^0+a^1+...a^(n-1) = (a^n-1)/(a-1) */
return ((pown(fanout,level) - 1)/(fanout - 1));
}
/*
* And now the building functions.
*
* An example for fanout = 2, comm_size = 7
*
* 0 <-- delta = 1 (fanout^0)
* / \
* 1 2 <-- delta = 2 (fanout^1)
* / \ / \
* 3 5 4 6 <-- delta = 4 (fanout^2)
*/
ompi_coll_tree_t*
ompi_coll_tuned_topo_build_tree( int fanout,
struct ompi_communicator_t* comm,
int root )
{
int rank, size;
int schild, sparent;
int level; /* location of my rank in the tree structure of size */
int delta; /* number of nodes on my level */
int slimit; /* total number of nodes on levels above me */
int shiftedrank;
int i;
ompi_coll_tree_t* tree;
ORTE_OUTPUT((ompi_coll_tuned_stream, "coll:tuned:topo_build_tree Building fo %d rt %d", fanout, root));
if (fanout<1) {
ORTE_OUTPUT((ompi_coll_tuned_stream, "coll:tuned:topo_build_tree invalid fanout %d", fanout));
return NULL;
}
if (fanout>MAXTREEFANOUT) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo_build_tree invalid fanout %d bigger than max %d", fanout, MAXTREEFANOUT));
return NULL;
}
/*
* Get size and rank of the process in this communicator
*/
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
tree = (ompi_coll_tree_t*)malloc(sizeof(ompi_coll_tree_t));
if (!tree) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo_build_tree PANIC::out of memory"));
return NULL;
}
tree->tree_root = MPI_UNDEFINED;
tree->tree_nextsize = MPI_UNDEFINED;
/*
* Set root
*/
tree->tree_root = root;
/*
* Initialize tree
*/
tree->tree_fanout = fanout;
tree->tree_bmtree = 0;
tree->tree_root = root;
tree->tree_prev = -1;
tree->tree_nextsize = 0;
for( i = 0; i < fanout; i++ ) {
tree->tree_next[i] = -1;
}
/* return if we have less than 2 processes */
if( size < 2 ) {
return tree;
}
/*
* Shift all ranks by root, so that the algorithm can be
* designed as if root would be always 0
* shiftedrank should be used in calculating distances
* and position in tree
*/
shiftedrank = rank - root;
if( shiftedrank < 0 ) {
shiftedrank += size;
}
/* calculate my level */
level = calculate_level( fanout, shiftedrank );
delta = pown( fanout, level );
/* find my children */
for( i = 0; i < fanout; i++ ) {
schild = shiftedrank + delta * (i+1);
if( schild < size ) {
tree->tree_next[i] = (schild+root)%size;
tree->tree_nextsize = tree->tree_nextsize + 1;
} else {
break;
}
}
/* find my parent */
slimit = calculate_num_nodes_up_to_level( fanout, level );
sparent = shiftedrank;
if( sparent < fanout ) {
sparent = 0;
} else {
while( sparent >= slimit ) {
sparent -= delta/fanout;
}
}
tree->tree_prev = (sparent+root)%size;
return tree;
}
/*
* Constructs in-order binary tree which can be used for non-commutative reduce
* operations.
* Root of this tree is always rank (size-1) and fanout is 2.
* Here are some of the examples of this tree:
* size == 2 size == 3 size == 4 size == 9
* 1 2 3 8
* / / \ / \ / \
* 0 1 0 2 1 7 3
* / / \ / \
* 0 6 5 2 1
* / /
* 4 0
*/
ompi_coll_tree_t*
ompi_coll_tuned_topo_build_in_order_bintree( struct ompi_communicator_t* comm )
{
int rank, size;
int myrank, rightsize, delta;
int parent, lchild, rchild;
ompi_coll_tree_t* tree;
/*
* Get size and rank of the process in this communicator
*/
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
tree = (ompi_coll_tree_t*)malloc(sizeof(ompi_coll_tree_t));
if (!tree) {
ORTE_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:topo_build_tree PANIC::out of memory"));
return NULL;
}
tree->tree_root = MPI_UNDEFINED;
tree->tree_nextsize = MPI_UNDEFINED;
/*
* Initialize tree
*/
tree->tree_fanout = 2;
tree->tree_bmtree = 0;
tree->tree_root = size - 1;
tree->tree_prev = -1;
tree->tree_nextsize = 0;
tree->tree_next[0] = -1;
tree->tree_next[1] = -1;
ORTE_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:topo_build_in_order_tree Building fo %d rt %d",
tree->tree_fanout, tree->tree_root));
/*
* Build the tree
*/
myrank = rank;
parent = size - 1;
delta = 0;
while ( 1 ) {
/* Compute the size of the right subtree */
rightsize = size >> 1;
/* Determine the left and right child of this parent */
lchild = -1;
rchild = -1;
if (size - 1 > 0) {
lchild = parent - 1;
if (lchild > 0) {
rchild = rightsize - 1;
}
}
/* The following cases are possible: myrank can be
- a parent,
- belong to the left subtree, or
- belong to the right subtee
Each of the cases need to be handled differently.
*/
if (myrank == parent) {
/* I am the parent:
- compute real ranks of my children, and exit the loop. */
if (lchild >= 0) tree->tree_next[0] = lchild + delta;
if (rchild >= 0) tree->tree_next[1] = rchild + delta;
break;
}
if (myrank > rchild) {
/* I belong to the left subtree:
- If I am the left child, compute real rank of my parent
- Iterate down through tree:
compute new size, shift ranks down, and update delta.
*/
if (myrank == lchild) {
tree->tree_prev = parent + delta;
}
size = size - rightsize - 1;
delta = delta + rightsize;
myrank = myrank - rightsize;
parent = size - 1;
} else {
/* I belong to the right subtree:
- If I am the right child, compute real rank of my parent
- Iterate down through tree:
compute new size and parent,
but the delta and rank do not need to change.
*/
if (myrank == rchild) {
tree->tree_prev = parent + delta;
}
size = rightsize;
parent = rchild;
}
}
if (tree->tree_next[0] >= 0) { tree->tree_nextsize = 1; }
if (tree->tree_next[1] >= 0) { tree->tree_nextsize += 1; }
return tree;
}
int ompi_coll_tuned_topo_destroy_tree( ompi_coll_tree_t** tree )
{
ompi_coll_tree_t *ptr;
if ((!tree)||(!*tree)) {
return OMPI_SUCCESS;
}
ptr = *tree;
free (ptr);
*tree = NULL; /* mark tree as gone */
return OMPI_SUCCESS;
}
/*
*
* Here are some of the examples of this tree:
* size == 2 size = 4 size = 8
* 0 0 0
* / | \ / | \
* 1 2 1 4 2 1
* | | |\
* 3 6 5 3
* |
* 7
*/
ompi_coll_tree_t*
ompi_coll_tuned_topo_build_bmtree( struct ompi_communicator_t* comm,
int root )
{
int childs = 0;
int rank;
int size;
int mask = 1;
int index;
int remote;
ompi_coll_tree_t *bmtree;
int i;
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_bmtree rt %d", root));
/*
* Get size and rank of the process in this communicator
*/
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
index = rank -root;
bmtree = (ompi_coll_tree_t*)malloc(sizeof(ompi_coll_tree_t));
if (!bmtree) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_bmtree PANIC out of memory"));
return NULL;
}
bmtree->tree_bmtree = 1;
bmtree->tree_root = MPI_UNDEFINED;
bmtree->tree_nextsize = MPI_UNDEFINED;
for(i=0;i<MAXTREEFANOUT;i++) {
bmtree->tree_next[i] = -1;
}
if( index < 0 ) index += size;
while( mask <= index ) mask <<= 1;
/* Now I can compute my father rank */
if( root == rank ) {
bmtree->tree_prev = root;
} else {
remote = (index ^ (mask >> 1)) + root;
if( remote >= size ) remote -= size;
bmtree->tree_prev = remote;
}
/* And now let's fill my childs */
while( mask < size ) {
remote = (index ^ mask);
if( remote >= size ) break;
remote += root;
if( remote >= size ) remote -= size;
if (childs==MAXTREEFANOUT) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_bmtree max fanout incorrect %d needed %d", MAXTREEFANOUT, childs));
return NULL;
}
bmtree->tree_next[childs] = remote;
mask <<= 1;
childs++;
}
bmtree->tree_nextsize = childs;
bmtree->tree_root = root;
return bmtree;
}
/*
* Constructs in-order binomial tree which can be used for gather/scatter
* operations.
*
* Here are some of the examples of this tree:
* size == 2 size = 4 size = 8
* 0 0 0
* / / | / | \
* 1 1 2 1 2 4
* | | | \
* 3 3 5 6
* |
* 7
*/
ompi_coll_tree_t*
ompi_coll_tuned_topo_build_in_order_bmtree( struct ompi_communicator_t* comm,
int root )
{
int childs = 0;
int rank, vrank;
int size;
int mask = 1;
int remote;
ompi_coll_tree_t *bmtree;
int i;
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_in_order_bmtree rt %d", root));
/*
* Get size and rank of the process in this communicator
*/
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
vrank = (rank - root + size) % size;
bmtree = (ompi_coll_tree_t*)malloc(sizeof(ompi_coll_tree_t));
if (!bmtree) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_bmtree PANIC out of memory"));
return NULL;
}
bmtree->tree_bmtree = 1;
bmtree->tree_root = MPI_UNDEFINED;
bmtree->tree_nextsize = MPI_UNDEFINED;
for(i=0;i<MAXTREEFANOUT;i++) {
bmtree->tree_next[i] = -1;
}
if (root == rank) {
bmtree->tree_prev = root;
}
while (mask < size) {
remote = vrank ^ mask;
if (remote < vrank) {
bmtree->tree_prev = (remote + root) % size;
break;
} else if (remote < size) {
bmtree->tree_next[childs] = (remote + root) % size;
childs++;
if (childs==MAXTREEFANOUT) {
ORTE_OUTPUT((ompi_coll_tuned_stream,
"coll:tuned:topo:build_bmtree max fanout incorrect %d needed %d",
MAXTREEFANOUT, childs));
return NULL;
}
}
mask <<= 1;
}
bmtree->tree_nextsize = childs;
bmtree->tree_root = root;
return bmtree;
}
ompi_coll_tree_t*
ompi_coll_tuned_topo_build_chain( int fanout,
struct ompi_communicator_t* comm,
int root )
{
int rank, size;
int srank; /* shifted rank */
int i,maxchainlen;
int mark,head,len;
ompi_coll_tree_t *chain;
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_chain fo %d rt %d", fanout, root));
/*
* Get size and rank of the process in this communicator
*/
size = ompi_comm_size(comm);
rank = ompi_comm_rank(comm);
if( fanout < 1 ) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_chain WARNING invalid fanout of ZERO, forcing to 1 (pipeline)!"));
fanout = 1;
}
if (fanout>MAXTREEFANOUT) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_chain WARNING invalid fanout %d bigger than max %d, forcing to max!", fanout, MAXTREEFANOUT));
fanout = MAXTREEFANOUT;
}
/*
* Allocate space for topology arrays if needed
*/
chain = (ompi_coll_tree_t*)malloc( sizeof(ompi_coll_tree_t) );
if (!chain) {
ORTE_OUTPUT((ompi_coll_tuned_stream,"coll:tuned:topo:build_chain PANIC out of memory"));
fflush(stdout);
return NULL;
}
chain->tree_root = MPI_UNDEFINED;
chain->tree_nextsize = -1;
for(i=0;i<fanout;i++) chain->tree_next[i] = -1;
/*
* Set root & numchain
*/
chain->tree_root = root;
if( (size - 1) < fanout ) {
chain->tree_nextsize = size-1;
fanout = size-1;
} else {
chain->tree_nextsize = fanout;
}
/*
* Shift ranks
*/
srank = rank - root;
if (srank < 0) srank += size;
/*
* Special case - fanout == 1
*/
if( fanout == 1 ) {
if( srank == 0 ) chain->tree_prev = -1;
else chain->tree_prev = (srank-1+root)%size;
if( (srank + 1) >= size) {
chain->tree_next[0] = -1;
chain->tree_nextsize = 0;
} else {
chain->tree_next[0] = (srank+1+root)%size;
chain->tree_nextsize = 1;
}
return chain;
}
/* Let's handle the case where there is just one node in the communicator */
if( size == 1 ) {
chain->tree_next[0] = -1;
chain->tree_nextsize = 0;
chain->tree_prev = -1;
return chain;
}
/*
* Calculate maximum chain length
*/
maxchainlen = (size-1) / fanout;
if( (size-1) % fanout != 0 ) {
maxchainlen++;
mark = (size-1)%fanout;
} else {
mark = fanout+1;
}
/*
* Find your own place in the list of shifted ranks
*/
if( srank != 0 ) {
int column;
if( srank-1 < (mark * maxchainlen) ) {
column = (srank-1)/maxchainlen;
head = 1+column*maxchainlen;
len = maxchainlen;
} else {
column = mark + (srank-1-mark*maxchainlen)/(maxchainlen-1);
head = mark*maxchainlen+1+(column-mark)*(maxchainlen-1);
len = maxchainlen-1;
}
if( srank == head ) {
chain->tree_prev = 0; /*root*/
} else {
chain->tree_prev = srank-1; /* rank -1 */
}
if( srank == (head + len - 1) ) {
chain->tree_next[0] = -1;
chain->tree_nextsize = 0;
} else {
if( (srank + 1) < size ) {
chain->tree_next[0] = srank+1;
chain->tree_nextsize = 1;
} else {
chain->tree_next[0] = -1;
chain->tree_nextsize = 0;
}
}
}
/*
* Unshift values
*/
if( rank == root ) {
chain->tree_prev = -1;
chain->tree_next[0] = (root+1)%size;
for( i = 1; i < fanout; i++ ) {
chain->tree_next[i] = chain->tree_next[i-1] + maxchainlen;
if( i > mark ) {
chain->tree_next[i]--;
}
chain->tree_next[i] %= size;
}
chain->tree_nextsize = fanout;
} else {
chain->tree_prev = (chain->tree_prev+root)%size;
if( chain->tree_next[0] != -1 ) {
chain->tree_next[0] = (chain->tree_next[0]+root)%size;
}
}
return chain;
}
int ompi_coll_tuned_topo_dump_tree (ompi_coll_tree_t* tree, int rank)
{
int i;
ORTE_OUTPUT((ompi_coll_tuned_stream, "coll:tuned:topo:topo_dump_tree %1d tree root %d"
" fanout %d BM %1d nextsize %d prev %d",
rank, tree->tree_root, tree->tree_bmtree, tree->tree_fanout,
tree->tree_nextsize, tree->tree_prev));
if( tree->tree_nextsize ) {
for( i = 0; i < tree->tree_nextsize; i++ )
ORTE_OUTPUT((ompi_coll_tuned_stream,"[%1d] %d", i, tree->tree_next[i]));
}
return (0);
}