381 строка
16 KiB
C
381 строка
16 KiB
C
/*
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* Copyright (c) 2006 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
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* Copyright (c) 2006 The Technical University of Chemnitz. All
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* rights reserved.
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* Copyright (c) 2013 Los Alamos National Security, LLC. All rights
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* reserved.
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* Copyright (c) 2014 NVIDIA Corporation. All rights reserved.
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*
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* Author(s): Torsten Hoefler <htor@cs.indiana.edu>
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*
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*/
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#include "nbc_internal.h"
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static inline int a2a_sched_linear(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule *schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm);
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static inline int a2a_sched_pairwise(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule *schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm);
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static inline int a2a_sched_diss(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule* schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, NBC_Handle *handle);
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#ifdef NBC_CACHE_SCHEDULE
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/* tree comparison function for schedule cache */
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int NBC_Alltoall_args_compare(NBC_Alltoall_args *a, NBC_Alltoall_args *b, void *param) {
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if( (a->sendbuf == b->sendbuf) &&
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(a->sendcount == b->sendcount) &&
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(a->sendtype == b->sendtype) &&
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(a->recvbuf == b->recvbuf) &&
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(a->recvcount == b->recvcount) &&
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(a->recvtype == b->recvtype) ) {
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return 0;
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}
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if( a->sendbuf < b->sendbuf ) {
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return -1;
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}
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return +1;
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}
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#endif
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/* simple linear MPI_Ialltoall the (simple) algorithm just sends to all nodes */
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int ompi_coll_libnbc_ialltoall(void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount,
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MPI_Datatype recvtype, struct ompi_communicator_t *comm, ompi_request_t ** request,
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struct mca_coll_base_module_2_0_0_t *module)
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{
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int rank, p, res, a2asize, sndsize, datasize;
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NBC_Schedule *schedule;
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MPI_Aint rcvext, sndext;
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#ifdef NBC_CACHE_SCHEDULE
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NBC_Alltoall_args *args, *found, search;
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#endif
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char *rbuf, *sbuf, inplace;
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enum {NBC_A2A_LINEAR, NBC_A2A_PAIRWISE, NBC_A2A_DISS} alg;
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NBC_Handle *handle;
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ompi_coll_libnbc_request_t **coll_req = (ompi_coll_libnbc_request_t**) request;
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ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
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NBC_IN_PLACE(sendbuf, recvbuf, inplace);
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res = NBC_Init_handle(comm, coll_req, libnbc_module);
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if(res != NBC_OK) { printf("Error in NBC_Init_handle(%i)\n", res); return res; }
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handle = (*coll_req);
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res = MPI_Comm_rank(comm, &rank);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_rank() (%i)\n", res); return res; }
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res = MPI_Comm_size(comm, &p);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_size() (%i)\n", res); return res; }
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res = MPI_Type_extent(sendtype, &sndext);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
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res = MPI_Type_extent(recvtype, &rcvext);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
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res = MPI_Type_size(sendtype, &sndsize);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_size() (%i)\n", res); return res; }
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/* algorithm selection */
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a2asize = sndsize*sendcount*p;
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/* this number is optimized for TCP on odin.cs.indiana.edu */
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if((p <= 8) && ((a2asize < 1<<17) || (sndsize*sendcount < 1<<12))) {
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/* just send as fast as we can if we have less than 8 peers, if the
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* total communicated size is smaller than 1<<17 *and* if we don't
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* have eager messages (msgsize < 1<<13) */
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alg = NBC_A2A_LINEAR;
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} else if(a2asize < (1<<12)*p) {
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/*alg = NBC_A2A_DISS;*/
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alg = NBC_A2A_LINEAR;
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} else
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alg = NBC_A2A_LINEAR; /*NBC_A2A_PAIRWISE;*/
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if(!inplace) {
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/* copy my data to receive buffer */
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rbuf = ((char *)recvbuf) + (rank*recvcount*rcvext);
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sbuf = ((char *)sendbuf) + (rank*sendcount*sndext);
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res = NBC_Copy(sbuf, sendcount, sendtype, rbuf, recvcount, recvtype, comm);
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if (NBC_OK != res) { printf("Error in NBC_Copy() (%i)\n", res); return res; }
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}
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/* allocate temp buffer if we need one */
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if(alg == NBC_A2A_DISS) {
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/* only A2A_DISS needs buffers */
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if(NBC_Type_intrinsic(sendtype)) {
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datasize = sndext*sendcount;
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} else {
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res = MPI_Pack_size(sendcount, sendtype, comm, &datasize);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Pack_size() (%i)\n", res); return res; }
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}
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/* allocate temporary buffers */
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if(p % 2 == 0) {
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handle->tmpbuf=malloc(datasize*p*2);
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} else {
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/* we cannot divide p by two, so alloc more to be safe ... */
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handle->tmpbuf=malloc(datasize*(p/2+1)*2*2);
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}
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/* phase 1 - rotate n data blocks upwards into the tmpbuffer */
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#if OPAL_CUDA_SUPPORT
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if(NBC_Type_intrinsic(sendtype) && !(opal_cuda_check_bufs((char *)sendbuf, (char *)recvbuf))) {
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#else
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if(NBC_Type_intrinsic(sendtype)) {
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#endif /* OPAL_CUDA_SUPPORT */
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/* contiguous - just copy (1st copy) */
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memcpy(handle->tmpbuf, (char*)sendbuf+datasize*rank, datasize*(p-rank));
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if(rank != 0) memcpy((char*)handle->tmpbuf+datasize*(p-rank), sendbuf, datasize*(rank));
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} else {
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int pos=0;
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/* non-contiguous - pack */
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res = MPI_Pack((char*)sendbuf+rank*sendcount*sndext, (p-rank)*sendcount, sendtype, handle->tmpbuf, (p-rank)*datasize, &pos, comm);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Pack() (%i)\n", res); return res; }
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if(rank != 0) {
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pos = 0;
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MPI_Pack(sendbuf, rank*sendcount, sendtype, (char*)handle->tmpbuf+datasize*(p-rank), rank*datasize, &pos, comm);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Pack() (%i)\n", res); return res; }
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}
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}
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} else {
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handle->tmpbuf=NULL;
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}
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#ifdef NBC_CACHE_SCHEDULE
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/* search schedule in communicator specific tree */
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search.sendbuf=sendbuf;
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search.sendcount=sendcount;
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search.sendtype=sendtype;
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search.recvbuf=recvbuf;
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search.recvcount=recvcount;
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search.recvtype=recvtype;
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found = (NBC_Alltoall_args*)hb_tree_search((hb_tree*)handle->comminfo->NBC_Dict[NBC_ALLTOALL], &search);
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if(found == NULL) {
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#endif
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/* not found - generate new schedule */
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schedule = (NBC_Schedule*)malloc(sizeof(NBC_Schedule));
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if (NULL == schedule) { printf("Error in malloc()\n"); return res; }
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res = NBC_Sched_create(schedule);
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if(res != NBC_OK) { printf("Error in NBC_Sched_create (%i)\n", res); return res; }
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switch(alg) {
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case NBC_A2A_LINEAR:
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res = a2a_sched_linear(rank, p, sndext, rcvext, schedule, sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, comm);
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break;
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case NBC_A2A_DISS:
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res = a2a_sched_diss(rank, p, sndext, rcvext, schedule, sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, comm, handle);
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break;
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case NBC_A2A_PAIRWISE:
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res = a2a_sched_pairwise(rank, p, sndext, rcvext, schedule, sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, comm);
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break;
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}
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if (NBC_OK != res) { return res; }
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res = NBC_Sched_commit(schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_commit() (%i)\n", res); return res; }
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#ifdef NBC_CACHE_SCHEDULE
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/* save schedule to tree */
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args = (NBC_Alltoall_args*)malloc(sizeof(NBC_Alltoall_args));
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args->sendbuf=sendbuf;
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args->sendcount=sendcount;
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args->sendtype=sendtype;
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args->recvbuf=recvbuf;
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args->recvcount=recvcount;
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args->recvtype=recvtype;
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args->schedule=schedule;
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res = hb_tree_insert ((hb_tree*)handle->comminfo->NBC_Dict[NBC_ALLTOALL], args, args, 0);
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if(res != 0) printf("error in dict_insert() (%i)\n", res);
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/* increase number of elements for A2A */
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if(++handle->comminfo->NBC_Dict_size[NBC_ALLTOALL] > NBC_SCHED_DICT_UPPER) {
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NBC_SchedCache_dictwipe((hb_tree*)handle->comminfo->NBC_Dict[NBC_ALLTOALL], &handle->comminfo->NBC_Dict_size[NBC_ALLTOALL]);
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/*if(!rank) printf("[%i] removing %i elements - new size: %i \n", rank, SCHED_DICT_UPPER-SCHED_DICT_LOWER, handle->comminfo->NBC_Alltoall_size);*/
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}
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/*if(!rank) printf("[%i] added new schedule to tree - number %i\n", rank, handle->comminfo->NBC_Dict_size[NBC_ALLTOALL]);*/
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} else {
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/* found schedule */
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schedule=found->schedule;
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}
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#endif
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res = NBC_Start(handle, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Start() (%i)\n", res); return res; }
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return NBC_OK;
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}
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int ompi_coll_libnbc_ialltoall_inter (void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount,
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MPI_Datatype recvtype, struct ompi_communicator_t *comm, ompi_request_t ** request,
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struct mca_coll_base_module_2_0_0_t *module)
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{
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int rank, res, i, rsize;
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MPI_Aint sndext, rcvext;
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NBC_Schedule *schedule;
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char *rbuf, *sbuf;
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NBC_Handle *handle;
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ompi_coll_libnbc_request_t **coll_req = (ompi_coll_libnbc_request_t**) request;
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ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
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res = NBC_Init_handle(comm, coll_req, libnbc_module);
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if(res != NBC_OK) { printf("Error in NBC_Init_handle(%i)\n", res); return res; }
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handle = (*coll_req);
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res = MPI_Comm_remote_size (comm, &rsize);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_remote_size() (%i)\n", res); return res; }
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res = MPI_Comm_rank(comm, &rank);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_rank() (%i)\n", res); return res; }
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res = MPI_Type_extent(sendtype, &sndext);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
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res = MPI_Type_extent(recvtype, &rcvext);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
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schedule = (NBC_Schedule*)malloc(sizeof(NBC_Schedule));
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if (NULL == schedule) { printf("Error in malloc() (%i)\n", res); return res; }
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handle->tmpbuf=NULL;
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res = NBC_Sched_create(schedule);
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if(res != NBC_OK) { printf("Error in NBC_Sched_create (%i)\n", res); return res; }
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for (i = 0; i < rsize; i++) {
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/* post all sends */
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sbuf = ((char *) sendbuf) + (i * sendcount * sndext);
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res = NBC_Sched_send(sbuf, false, sendcount, sendtype, i, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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/* post all receives */
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rbuf = ((char *) recvbuf) + (i * recvcount * rcvext);
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res = NBC_Sched_recv(rbuf, false, recvcount, recvtype, i, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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}
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/*NBC_PRINT_SCHED(*schedule);*/
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res = NBC_Sched_commit(schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_commit() (%i)\n", res); return res; }
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res = NBC_Start(handle, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Start() (%i)\n", res); return res; }
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return NBC_OK;
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}
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static inline int a2a_sched_pairwise(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule* schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) {
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int res, r, sndpeer, rcvpeer;
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char *rbuf, *sbuf;
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res = NBC_OK;
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if(p < 2) return res;
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for(r=1;r<p;r++) {
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sndpeer = (rank+r)%p;
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rcvpeer = (rank-r+p)%p;
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rbuf = ((char *) recvbuf) + (rcvpeer*recvcount*rcvext);
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res = NBC_Sched_recv(rbuf, false, recvcount, recvtype, rcvpeer, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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sbuf = ((char *) sendbuf) + (sndpeer*sendcount*sndext);
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res = NBC_Sched_send(sbuf, false, sendcount, sendtype, sndpeer, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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if (r < p) {
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res = NBC_Sched_barrier(schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_barr() (%i)\n", res); return res; }
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}
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}
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return res;
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}
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static inline int a2a_sched_linear(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule* schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) {
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int res, r;
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char *rbuf, *sbuf;
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res = NBC_OK;
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for(r=0;r<p;r++) {
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/* easy algorithm */
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if (r == rank) { continue; }
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rbuf = ((char *) recvbuf) + (r*recvcount*rcvext);
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res = NBC_Sched_recv(rbuf, false, recvcount, recvtype, r, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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sbuf = ((char *) sendbuf) + (r*sendcount*sndext);
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res = NBC_Sched_send(sbuf, false, sendcount, sendtype, r, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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}
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return res;
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}
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static inline int a2a_sched_diss(int rank, int p, MPI_Aint sndext, MPI_Aint rcvext, NBC_Schedule* schedule, void* sendbuf, int sendcount, MPI_Datatype sendtype, void* recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, NBC_Handle *handle) {
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int res, i, r, speer, rpeer, datasize, offset, virtp;
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char *rbuf, *rtmpbuf, *stmpbuf;
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res = NBC_OK;
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if(p < 2) return res;
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if(NBC_Type_intrinsic(sendtype)) {
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datasize = sndext*sendcount;
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} else {
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res = MPI_Pack_size(sendcount, sendtype, comm, &datasize);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Pack_size() (%i)\n", res); return res; }
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}
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/* allocate temporary buffers */
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if(p % 2 == 0) {
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rtmpbuf = (char*)handle->tmpbuf+datasize*p;
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stmpbuf = (char*)handle->tmpbuf+datasize*(p+p/2);
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} else {
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/* we cannot divide p by two, so alloc more to be safe ... */
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virtp = (p/2+1)*2;
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rtmpbuf = (char*)handle->tmpbuf+datasize*p;
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stmpbuf = (char*)handle->tmpbuf+datasize*(p+virtp/2);
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}
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/* phase 2 - communicate */
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/*printf("[%i] temp buffer is at %lu of size %i, maxround: %i\n", rank, (unsigned long)handle->tmpbuf, (int)datasize*p*(1<<maxround), maxround);*/
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for(r = 1; r < p; r<<=1) {
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offset = 0;
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for(i=1; i<p; i++) {
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/* test if bit r is set in rank number i */
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if((i&r) == r) {
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/* copy data to sendbuffer (2nd copy) - could be avoided using iovecs */
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/*printf("[%i] round %i: copying element %i to buffer %lu\n", rank, r, i, (unsigned long)(stmpbuf+offset));*/
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NBC_Sched_copy((void*)(long)(i*datasize), true, datasize, MPI_BYTE, stmpbuf+offset-(unsigned long)handle->tmpbuf, true, datasize, MPI_BYTE, schedule);
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offset += datasize;
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}
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}
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speer = ( rank + r) % p;
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/* add p because modulo does not work with negative values */
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rpeer = ((rank - r)+p) % p;
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/*printf("[%i] receiving %i bytes from host %i into rbuf %lu\n", rank, offset, rpeer, (unsigned long)rtmpbuf);*/
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res = NBC_Sched_recv(rtmpbuf-(unsigned long)handle->tmpbuf, true, offset, MPI_BYTE, rpeer, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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/*printf("[%i] sending %i bytes to host %i from sbuf %lu\n", rank, offset, speer, (unsigned long)stmpbuf);*/
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res = NBC_Sched_send(stmpbuf-(unsigned long)handle->tmpbuf, true, offset, MPI_BYTE, speer, schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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res = NBC_Sched_barrier(schedule);
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if (NBC_OK != res) { printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
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/* unpack from buffer */
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offset = 0;
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for(i=1; i<p; i++) {
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/* test if bit r is set in rank number i */
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if((i&r) == r) {
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/* copy data to tmpbuffer (3rd copy) - could be avoided using iovecs */
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NBC_Sched_copy(rtmpbuf+offset-(unsigned long)handle->tmpbuf, true, datasize, MPI_BYTE, (void*)(long)(i*datasize), true, datasize, MPI_BYTE, schedule);
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offset += datasize;
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}
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}
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}
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/* phase 3 - reorder - data is now in wrong order in handle->tmpbuf -
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* reorder it into recvbuf */
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for(i=0; i<p; i++) {
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rbuf = (char*)recvbuf+((rank-i+p)%p)*recvcount*rcvext;
|
|
res = NBC_Sched_unpack((void*)(long)(i*datasize), true, recvcount, recvtype, rbuf, false, schedule);
|
|
if (NBC_OK != res) { printf("MPI Error in NBC_Sched_pack() (%i)\n", res); return res; }
|
|
}
|
|
|
|
return NBC_OK;
|
|
}
|
|
|