466 строки
20 KiB
BibTeX
466 строки
20 KiB
BibTeX
@InProceedings{gropp:selfconsist-io,
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author={William Gropp and Dries Kimpe and Robert B. Ross and Rajeev Thakur and Jesper Larsson Tr\"aff},
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title={Self-Consistent {MPI-IO} Performance Requirements and Expectations},
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booktitle={Proc. of the 15th European PVM/MPI Users' Group Meeting (Euro
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PVM/MPI 2008)},
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month={September},
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year={2008}
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}
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@InProceedings{kimpe:log-based,
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author={D. Kimpe and R. Ross and S. Vandewalle and S. Poedts},
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title={Transparent Log-Based Data Storage in {MPI-IO} Applications},
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booktitle={Proc. of the 14th European PVM/MPI Users' Group Meeting (Euro PVM/MPI 2007)},
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month={September},
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year={2007}
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}
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@InProceedings{latham:gen-req,
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author={Robert Latham and William Gropp and Robert B. Ross and Rajeev Thakur},
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title={Extending the {MPI-2} Generalized Request Interface},
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booktitle={Proc. of the 14th European PVM/MPI Users' Group Meeting (Euro PVM/MPI 2007)},
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month={September},
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year={2007},
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pages={223--232}
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}
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@InProceedings{lee:mpiio-l,
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author={Jonghyun Lee and Robert B. Ross and Scott Atchley and Micah Beck and
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and Rajeev Thakur},
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title={{MPI-IO/L}: Efficient Remote {I/O} for {MPI-IO} via Logistical Networking},
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booktitle={Proceedings of the 20th IEEE International Parallel and Distributed
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Processing Symposium (IPDPS 2006)},
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address={Rhodes Island, Greece},
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month={April},
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year={2006}
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}
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@InProceedings{ross:atomic,
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author = {Robert Ross and Robert Latham and William Gropp and Rajeev Thakur
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and Brian Toonen},
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title = {Implementing {MPI-IO} Atomic Mode Without File System Support},
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booktitle = {Proceedings of CCGrid 2005},
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month = {May},
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year = {2005},
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}
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@InProceedings{latham:sharedfp,
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author = {Robert Latham and Robert Ross and Rajeev Thakur},
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title = {Implementing {MPI-IO} Shared File Pointers Without File
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System Support},
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booktitle = {Proceedings of EuroPVM/MPI 2005},
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month={September},
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year = {2005},
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}
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@article{latham:rma-ops,
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author = {Latham, Robert and Ross, Robert and Thakur, Rajeev},
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title = {{Implementing MPI-IO Atomic Mode and Shared File Pointers Using MPI
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One-Sided Communication}},
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journal = {International Journal of High Performance Computing Applications},
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volume = {21},
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number = {2},
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pages = {132-143},
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doi = {10.1177/1094342007077859},
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year = {2007},
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abstract = {The ROMIO implementation of the MPI-IO standard provides a
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portable infrastructure for use on top of a variety of underlying storage
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targets. These targets vary widely in their capabilities, and in some cases
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additional effort is needed within ROMIO to support all MPI-IO semantics. Two
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aspects of the interface that can be problematic to implement are MPI-IO
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atomic mode and the shared file pointer access routines. Atomic mode requires
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enforcing strict consistency semantics, and shared file pointer routines
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require communication and coordination in order to atomically update a shared
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resource. For some file systems, native locks may be used to implement these
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features, but not all file systems have lock support. In this work, we
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describe algorithms for implementing efficient mutex locks using MPI-1 and
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the one-sided capabilities from MPI-2. We then show how these algorithms may
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be used to implement both MPI-IO atomic mode and shared file pointer
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methods for ROMIO without requiring any features from the underlying file
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system. We show that these algorithms can outperform traditional file system
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lock approaches. Because of the portable nature of these algorithms, they are
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likely useful in a variety of situations where distributed locking or
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coordination is needed in the MPI-2 environment. },
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URL = {http://hpc.sagepub.com/cgi/content/abstract/21/2/132},
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pdf = {papers/latham_rmaops.pdf},
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eprint = {http://hpc.sagepub.com/cgi/reprint/21/2/132.pdf}
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}
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@Article{latham:mpi-io-scalability,
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author = {Rob Latham and Rob Ross and Rajeev Thakur},
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title = {The impact of file systems on {MPI-IO} scalability},
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journal = {Lecture Notes in Computer Science},
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booktitle = {11th European Parallel Virtual Machine and Message Passing
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Interface Users Group Meeting; September 19-22, 2004; Budapest, HUNGARY},
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editor = {Kranzlmuller, D; Kacsuk, P; Dongarra, J},
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year = {2004},
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month = {September},
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volume = {3241},
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pages = {87--96},
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institution = {Argonne Natl Lab, 9700 S Cass Ave, Argonne, IL 60439 USA;
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Argonne Natl Lab, Argonne, IL 60439 USA},
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publisher = {Springer-Verlag Heidelberg},
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copyright = {(c)2004 Institute for Scientific Information, Inc.},
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URL = {http://www.springerlink.com/link.asp?id=m31px2lt90296b62},
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pdf = {papers/latham:scalable_ops.pdf},
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keywords = {scalability analysis, MPI-IO, pario-bib},
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abstract = {As the number of nodes in cluster systems continues to grow,
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leveraging scalable algorithms in all aspects of such systems becomes key to
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maintaining performance. While scalable algorithms have been applied
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successfully in some areas of parallel I/O, many operations are still
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performed in an uncoordinated manner. In this work we consider, in three file
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system scenarios, the possibilities for applying scalable algorithms to the
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many operations that make up the MPI-IO interface. From this evaluation we
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extract a set of file system characteristics that aid in developing scalable
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MPI-IO implementations.}
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}
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@InProceedings{thakur:byte-range,
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author = {Rajeev Thakur and Robert Ross and Robert Latham},
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title = {Implementing Byte-Range Locks Using {MPI} One-Sided Communication},
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booktitle = {Proceedings of the 12th European PVM/MPI Users' Group Meeting (Euro PVM/MPI 2005), Recent Advances in Parallel Virtual Machine and Message Passing Interface, Lecture Notes in Computer Science, LNCS 3666, Springer},
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month = {September},
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year = {2005},
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pages = {119-128},
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}
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@InProceedings{gropp:io-redundancy,
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author={William Gropp and Robert B. Ross and Neill Miller},
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title={Providing Efficient {I/O} Redundancy in {MPI} Environments},
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booktitle={Proceedings of EuroPVM/MPI 2004},
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month={September},
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year={2004}
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}
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@InProceedings{lee:rfs,
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author = {Jonghyun Lee and Xiaosong Ma and Robert B. Ross and Rajeev Thakur
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and Marianne Winslett},
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title={{RFS}: Implementing Efficient and Flexible Remote File Access for
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{MPI-IO}},
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booktitle={Proceedings of Cluster 2004},
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month={September},
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year={2004}
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}
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@InProceedings{yu:bgl-io,
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author = {Hao Yu and R. K. Sahoo and C. Howson and George. Almasi and
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J. G. Castanos and M. Gupta and Jose. E. Moreira and J. J. Parker and
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T. E. Engelsiepen and Robert Ross and Rajeev Thakur and Robert Latham
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and W. D. Gropp},
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title = {High Performance File {I/O} for the {BlueGene/L} Supercomputer},
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booktitle = {Proceedings of the 12th International Symposium on High-Performance Computer Architecture (HPCA-12)},
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month = {February},
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year = {2006},
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url = {http://www.mcs.anl.gov/~thakur/papers/bgl-io.pdf},
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}
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@Article{Hastings:pio-shmem,
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author = {Andrew B. Hastings and Alok Choudhary},
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title = {Exploiting Shared Memory to Improve Parallel {I/O} Performance},
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journal = {Lecture Notes in Computer Science},
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booktitle = {13th European PVM/MPI User's Group Meeting; September 17-20, 2006; Bonn, Germany},
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editor = {Mohr, B; Worringen, J; Dongarra, J},
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year = {2006},
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month = {September},
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volume = {4192},
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pages = {212-221},
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publisher = {Springer-Verlag Heidelberg},
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}
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@Article{seidel:memfs,
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author = {Jan Seidel and Rudolf Berrendorf and Marcel Birkner and Marc-Andre Hermanns},
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title = {High-Bandwidth Remote Parallel {I/O} with the Distributed Memory Filesystem {MEMFS}},
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journal = {Lecture Notes in Computer Science},
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booktitle = {13th European PVM/MPI User's Group Meeting; September 17-20, 2006; Bonn, Germany},
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editor = {Mohr, B; Worringen, J; Dongarra, J},
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year = {2006},
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month = {September},
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volume = {4192},
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pages = {222-229},
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publisher = {Springer-Verlag Heidelberg},
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}
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@InProceedings{calderon:ft-mpiio,
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author={A. Calderon and F. Garcia-Carballeira and Florin Isaila and Rainer Keller and Alexander Schulz},
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title={Faul Tolerant File Models for {MPI-IO} Parallel File Systems},
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booktitle={Proc. of the 14th European PVM/MPI Users' Group Meeting (Euro PVM/MPI 2007)},
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month={September},
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year={2007},
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pages={153-160}
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}
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@InProceedings{Blas:romio-gpfs,
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author={Francisco Javier Garc{\'i}a Blas and Florin Isaila and Jes{\'u}s Carretero
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and Thomas Grossmann},
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title={Implementation and Evaluation of an {MPI-IO} Interface for
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{GPFS} in {ROMIO}},
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booktitle={Proc. of the 15th European PVM/MPI Users' Group Meeting (Euro
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PVM/MPI 2008)},
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month={September},
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year={2008}
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}
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@InProceedings{dickens:y-lib,
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author = {Dickens, Phillip M. and Logan, Jeremy},
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title = {Y-lib: a user level library to increase the performance of {MPI-IO} in a lustre file system environment},
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booktitle = {HPDC '09: Proceedings of the 18th ACM international symposium on High performance distributed computing},
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year = {2009},
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isbn = {978-1-60558-587-1},
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pages = {31--38},
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location = {Garching, Germany},
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doi = {http://doi.acm.org/10.1145/1551609.1551617},
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publisher = {ACM},
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address = {New York, NY, USA},
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}
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% these ROMIO-related papers won't be published until EuroPVM/MPI 2009
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@InProceedings{buettner:nonblocking-io,
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author = {David Buettner and Julian Kunkel and Thomas Ludwig},
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title = {Using Non-Blocking {I/O} Operations in High Performance Computing to Reduce Execution Times},
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booktitle = {To be Published in Proc. of the 16th European PVM/MPI User's Group Meeting (Euro PVM/MPI 2009)},
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month={September},
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year={2009}
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}
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@InProceedings{sehrish:conflicts,
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author = {Saba Sehrish and Jun Wang and Rajeev Thakur},
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title = {Conflict Detection Algorithm to Minimize Locking for {MPI-IO} Atomicity},
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booktitle = {To be Published in Proc. of the 16th European PVM/MPI User's Group Meeting (Euro PVM/MPI 2009)},
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month={September},
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year={2009}
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}
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@InProceedings{blas:bg-writeback,
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author = {Javier Garc{\'i}a Blas and Florin Isaila and Jes{\'u}s Carretero and Robert Latham and Robert Ross},
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title = {Multiple-level {MPI} file write-back and prefetching for {Blue Gene} systems},
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booktitle = {To be Published in Proc. of the 16th European PVM/MPI User's Group Meeting (Euro PVM/MPI 2009)},
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month={September},
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year={2009}
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}
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@InProceedings{isaila:ahpios,
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author = {Florin Isaila and Javier Garc{\'i}a Blas and Jes{\'u}s Carretero and Wei-keng Liao and Alok Choudhary},
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title = {{AHPIOS}: An {MPI-based} ad-hoc parallel {I/O} system},
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booktitle = {14th Intl Conference on Parallel and Distributed Systems. Melbourne, Victoria, Austraila},
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year={2008}
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}
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@InProceedings{blas:viewio,
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author = {Javier Garc{\'i}a Blas and Florin Isaila and David E. Singh and Jes{\'u}s Carretero},
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title ={View-based collective {I/O} for {MPI-IO}},
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booktitle={8th IEEE International Symposium on Cluster Computing and the Grid},
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year={2008}
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}
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@InProceedings{yu:lustre-joining,
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author = {Weikuan Yu and Jeffrey Vetter and R. Shane Canon and Song Jiang},
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title = {Exploiting {Lustre} File Joining for Effective Collective {IO}},
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booktitle = {Seventh IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2007)},
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month = {May},
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year = {2007},
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}
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@InProceedings{yu:opal,
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author = {Weikuan Yu and Jeffrey Vetter and Shane Canon},
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title = {{OPAL}: An Open-Source {MPI-IO} Library over {Cray XT}},
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booktitle = {International Workshop on Storage Network Architecture and Parallel I/O (SNAPI'07)},
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month={September},
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year = {2007}
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}
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@InProceedings{dickens:lustre-mpi,
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title = {Towards a High Performance Implementation of {MPI-IO} on the {Lustre} File System},
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author = { Phillip M. Dickens and Jeremy Logan},
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booktitle = {Proceedings of GADA'08: Grid computing, high-performAnce and Distributed Applications. Monterrey, Mexico},
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month = {November},
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year = {2008}
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}
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@article{dickens:lustre-mpi-journal,
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author = {Phillip Dickens and J. Logan},
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title = {A High Performance Implementation of {MPI-IO} for a {Lustre} File System Environment},
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journal = {To appear: Concurrency and Computation: Practice and Experience},
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year = {2009}
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}
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@InProceedings{logan:objectio,
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author = {J. Logan and Phillip Dickens},
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title = {Using Object Based Files for High Performance Parallel {I/O}},
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booktitle = {Proceedings of the IEEE 4th International Workshop on Intelligent Data acquisition and Advanced Computing Systems: Technology and Applications. Dortmund, Germany},
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month = {September},
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year = {2007}
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}
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@InProceedings{logan:dynamic-object-io,
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author = {J. Logan and Phillip Dickens},
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title = {Dynamic Object Based {I/O}. (Invited Paper)},
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booktitle = {To appear: IEEE 5th International Workshop on Intelligent Data
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acquisition and Advanced Computing Systems: Technology and Applications},
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year = {2009},
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month = {August}
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}
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@InProceedings{liao:partitioning,
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author = {Wei-keng Liao and Alok Choudhary},
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title = {Dynamically Adapting File Domain Partitioning Methods for Collective {I/O} Based on Underlying Parallel File System Locking Protocols},
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booktitle = {Proceedings of International Conference for High Performance Computing, Networking, Storage and Analysis (SC08), Austin, Texas},
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month={November},
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year = {2008}
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}
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@InProceedings{nisar:io-delegation,
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author = {Arifa Nisar and Wei-keng Liao and Alok Choudhary},
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title = {Scaling Parallel {I/O} Performance through {I/O} Delegate and Caching System},
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booktitle = {Proceedings of International Conference for High Performance Computing, Networking, Storage and Analysis (SC08), Austin, Texas},
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month={November},
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year ={2008}
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}
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@InProceedings{liao:caching-large-scale,
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author = { Wei-keng Liao and Avery Ching and Kenin Coloma and Arifa Nisar and Alok Choudhary and Jackie Chen and Ramanan Sankaran and Scott Klasky},
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title = {Using {MPI} File Caching to Improve Parallel Write Performance for Large-Scale Scientific Applications},
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booktitle = {Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis (SC 2007), Reno, Nevada},
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month = {November},
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year = {2007}
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}
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@article{liao:cooperative_caching_mpi_journal,
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author = {Wei-keng Liao and Kenin Coloma and Alok Choudhary and Lee Ward},
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title = {Cooperative Client-side File Caching for {MPI} Applications},
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journal = {International Journal of High Performance Computing Applications},
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volume = {21},
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number = {2},
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pages = {144-154},
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month = {May},
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year = {2007}
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}
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@InProceedings{liao:client_cache_eval,
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author = {Wei-keng Liao and Avery Ching and Kenin Coloma and Alok Choudhary and Lee Ward},
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title = {An Implementation and Evaluation of Client-side File Caching for {MPI-IO}},
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booktitle = {Proceedings of the 21st International Parallel and Distributed
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Processing Symposium (IPDPS), Long Beach, California},
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month = {March},
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year = {2007}
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}
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@article{liao:overlapping_io,
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author = {Wei-keng Liao and Kenin Coloma and Alok Choudhary and Lee Ward and Eric Russell and Neil Pundit},
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title = {Scalable Design and Implementations for MPI Parallel Overlapping {I/O}},
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journal = {{IEEE} Transactions on Parallel and Distributed System},
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volume = {17},
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number = {11},
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pages = {1264-1276},
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month = {November},
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year = {2006}
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}
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@InProceedings{coloma:new_collective_io,
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author = {Kenin Coloma and Avery Ching and Alok Choudhary and Wei-keng Liao and Robert Ross and Rajeev Thakur and Lee Ward},
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title = {A New Flexible {MPI} Collective {I/O} Implementation},
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booktitle = {Proceedings of the IEEE Conference on Cluster Computing (Cluster 2006), Barcelona, Spain},
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month = {September},
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year = {2006}
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}
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@article{memik:multicollective_io,
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author = {Gokhan Memik and Mahmut T. Kandemir and Wei-Keng Liao and Alok Choudhary},
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title = {Multicollective {I/O}: A Technique for Exploiting Inter-file Access Patterns},
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journal = {{ACM} Transactions on Storage (TOS)},
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volume = {2},
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number = {3},
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pages = {349-360},
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month = {August},
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year = {2006}
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}
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@Inbook{liao:atomicity_overlap,
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author = {Wei-keng Liao and Alok Choudhary and Kenin Coloma and Lee Ward and Eric Russell and Neil Pundit},
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title = {{MPI} Atomicity and Concurrent Overlapping {I/O}},
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booktitle = {High Performance Computing: Paradigm and Infrastructure},
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pages = {203-218},
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chapter = {10},
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month = {November},
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year = {2005},
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publisher = {John Wiley & Sons Inc},
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note = {ISBN: 978-0-471-65471-1}
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}
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@InProceedings{liao:cooperative_write-behind,
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author = {Wei-keng Liao and Kenin Coloma and Alok Choudhary and Lee Ward},
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title = {{Cooperative Write-Behind Data Buffering for MPI I/O}},
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booktitle = {Proceedings of the 12th European Parallel Virtual Machine and Message Passing Interface Conference (EURO PVM/MPI), Sorrento (Naples), Italy},
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month = {September},
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year = {2005}
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}
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@InProceedings{liao:app_aware_caching,
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author = {Wei-keng Liao and Kenin Coloma and Alok Choudhary and Lee Ward and Eric Russell and Sonja Tideman},
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title = {{Collective Caching: Application-aware Client-side File Caching}},
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booktitle = {Proceedings of the 14th IEEE International Symposium on High Performance Distributed Computing (HPDC-14), Research Triangle Park, NC},
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month = {July},
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year = {2005}
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}
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@InProceedings{coloma:dache,
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author = {Kenin Coloma and Alok Choudhary and Wei-keng Liao and Lee Ward and Sonja Tideman},
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title = {{DAChe: Direct Access Cache System for Parallel I/O}},
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booktitle = {Proceedings of the International Supercomputer Conference, Heidelberg, Germany},
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month = {June},
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year = {2005}
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}
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@InProceedings{coloma:scalable_caching,
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author = {Kenin Coloma and Alok Choudhary and Wei-keng Liao and Lee Ward and Eric Russell and Neil Pundit},
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title = {{Scalable High-level Caching for Parallel I/O}},
|
|
booktitle = {Proceedings of the International Parallel and Distributed Parallel Processing Symposium (IPDPS), New Mexico},
|
|
month = {April},
|
|
year = {2004}
|
|
}
|
|
|
|
@InProceedings{Liao:scalable_atomicity,
|
|
author = {Wei-keng Liao and Alok Choudhary and Kenin Coloma and George K. Thiruvathukal and Lee Ward and Eric Russell and Neil Pundit},
|
|
title = {{Scalable Implementations of MPI Atomicity for Concurrent Overlapping I/O}},
|
|
booktitle = {Proceedings of the International Conference on Parallel Processing (ICPP), Kaohsiung, Taiwan},
|
|
month = {October},
|
|
year = {2003}
|
|
}
|
|
|
|
@InProceedings{ching:noncontig,
|
|
author = {Avery Ching and Alok Choudhary and Kenin Coloma and Wei-keng Liao and Robert Ross and William Gropp},
|
|
title = {{Noncontiguous I/O Accesses Through MPI-IO}},
|
|
booktitle = {Proceedings of the International Symposium on Cluster Computing and the Grid (CCGrid), Tokyo, Japan},
|
|
month = {May},
|
|
year = {2003}
|
|
}
|
|
|
|
@Article{chaarawi:collective_writes,
|
|
author = {Mohamad Chaarawi and Suneet Chandok and Edgar Gabriel},
|
|
title = {{Performance Evaluation of Collective Write Algorithms in MPI I/O}},
|
|
journal = {Lecture Notes in Computer Science},
|
|
booktitle = {International Conference on Computer Science (ICCS) 2009},
|
|
month = {May},
|
|
year = {2009},
|
|
volume = {5544},
|
|
pages = {185-194},
|
|
publisher = {Springer Berlin / Heidelberg},
|
|
doi = {10.1007/978-3-642-01970-8_19}
|
|
}
|
|
@Article{kulkarni::shared_file_pointers,
|
|
author = {Ketan Kulkarni and Edgar Gabriel},
|
|
title = {{Evaluating Algorithms for Shared File Pointer Operations in MPI I/O}},
|
|
journal = {Lecture Notes in Computer Science},
|
|
booktitle = {International Conference on Computer Science (ICCS) 2009},
|
|
month = {May},
|
|
year = {2009},
|
|
volume = {5544},
|
|
pages = {280-289},
|
|
publisher = {Springer Berlin / Heidelberg},
|
|
doi = {10.1007/978-3-642-01970-8_28}
|
|
}
|