e01bac962f
update the coll framework and mpi c bindings
464 строки
15 KiB
C
464 строки
15 KiB
C
/* -*- Mode: C; c-basic-offset:2 ; indent-tabs-mode:nil -*- */
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/*
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* Copyright (c) 2006 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
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* Copyright (c) 2006 The Technical University of Chemnitz. All
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* rights reserved.
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* Copyright (c) 2013-2015 Los Alamos National Security, LLC. All rights
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* reserved.
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* Copyright (c) 2014-2015 Research Organization for Information Science
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* and Technology (RIST). All rights reserved.
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*
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* Author(s): Torsten Hoefler <htor@cs.indiana.edu>
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*
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*/
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#include "nbc_internal.h"
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static inline int red_sched_binomial (int rank, int p, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, void *redbuf, NBC_Schedule *schedule, NBC_Handle *handle);
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static inline int red_sched_chain (int rank, int p, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, int ext, int size, NBC_Schedule *schedule, NBC_Handle *handle, int fragsize);
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static inline int red_sched_linear (int rank, int rsize, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, NBC_Schedule *schedule, NBC_Handle *handle);
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#ifdef NBC_CACHE_SCHEDULE
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/* tree comparison function for schedule cache */
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int NBC_Reduce_args_compare(NBC_Reduce_args *a, NBC_Reduce_args *b, void *param) {
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if ((a->sendbuf == b->sendbuf) &&
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(a->recvbuf == b->recvbuf) &&
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(a->count == b->count) &&
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(a->datatype == b->datatype) &&
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(a->op == b->op) &&
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(a->root == b->root)) {
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return 0;
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}
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if (a->sendbuf < b->sendbuf) {
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return -1;
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}
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return 1;
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}
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#endif
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/* the non-blocking reduce */
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int ompi_coll_libnbc_ireduce(const void* sendbuf, void* recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, int root, struct ompi_communicator_t *comm, ompi_request_t ** request,
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struct mca_coll_base_module_2_1_0_t *module) {
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int rank, p, res, segsize, size;
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MPI_Aint ext;
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NBC_Schedule *schedule;
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char *redbuf=NULL, inplace;
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enum { NBC_RED_BINOMIAL, NBC_RED_CHAIN } alg;
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NBC_Handle *handle;
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ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
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NBC_IN_PLACE(sendbuf, recvbuf, inplace);
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rank = ompi_comm_rank (comm);
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p = ompi_comm_size (comm);
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res = MPI_Type_extent(datatype, &ext);
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if (MPI_SUCCESS != res) {
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NBC_Error("MPI Error in MPI_Type_extent() (%i)", res);
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return res;
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}
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res = MPI_Type_size(datatype, &size);
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if (MPI_SUCCESS != res) {
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NBC_Error("MPI Error in MPI_Type_size() (%i)", res);
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return res;
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}
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/* only one node -> copy data */
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if ((p == 1) && !inplace) {
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res = NBC_Copy (sendbuf, count, datatype, recvbuf, count, datatype, comm);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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*request = &ompi_request_empty;
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return OMPI_SUCCESS;
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}
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res = NBC_Init_handle (comm, &handle, libnbc_module);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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/* algorithm selection */
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if (p > 4 || size * count < 65536) {
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alg = NBC_RED_BINOMIAL;
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if(rank == root) {
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/* root reduces in receivebuffer */
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handle->tmpbuf = malloc (ext * count);
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} else {
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/* recvbuf may not be valid on non-root nodes */
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handle->tmpbuf = malloc (ext * count * 2);
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redbuf = (char*) handle->tmpbuf + ext * count;
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}
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} else {
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handle->tmpbuf = malloc (ext * count);
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alg = NBC_RED_CHAIN;
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segsize = 16384/2;
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}
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if (OPAL_UNLIKELY(NULL == handle->tmpbuf)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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#ifdef NBC_CACHE_SCHEDULE
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NBC_Reduce_args *args, *found, search;
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/* search schedule in communicator specific tree */
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search.sendbuf = sendbuf;
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search.recvbuf = recvbuf;
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search.count = count;
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search.datatype = datatype;
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search.op = op;
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search.root = root;
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found = (NBC_Reduce_args *) hb_tree_search ((hb_tree *) libnbc_module->NBC_Dict[NBC_REDUCE], &search);
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if (NULL == found) {
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#endif
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schedule = OBJ_NEW(NBC_Schedule);
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if (OPAL_UNLIKELY(NULL == schedule)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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/* make sure the schedule is released with the handle on error */
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handle->schedule = schedule;
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switch(alg) {
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case NBC_RED_BINOMIAL:
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res = red_sched_binomial(rank, p, root, sendbuf, recvbuf, count, datatype, op, redbuf, schedule, handle);
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break;
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case NBC_RED_CHAIN:
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res = red_sched_chain(rank, p, root, sendbuf, recvbuf, count, datatype, op, ext, size, schedule, handle, segsize);
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break;
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}
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return res;
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}
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res = NBC_Sched_commit(schedule);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return res;
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}
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#ifdef NBC_CACHE_SCHEDULE
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/* save schedule to tree */
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args = (NBC_Reduce_args *) malloc (sizeof (args));
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if (NULL != args) {
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args->sendbuf = sendbuf;
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args->recvbuf = recvbuf;
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args->count = count;
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args->datatype = datatype;
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args->op = op;
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args->root = root;
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args->schedule = schedule;
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res = hb_tree_insert ((hb_tree *) libnbc_module->NBC_Dict[NBC_REDUCE], args, args, 0);
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if (0 == res) {
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OBJ_RETAIN(schedule);
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/* increase number of elements for Reduce */
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if (++libnbc_module->NBC_Dict_size[NBC_REDUCE] > NBC_SCHED_DICT_UPPER) {
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NBC_SchedCache_dictwipe ((hb_tree *) libnbc_module->NBC_Dict[NBC_REDUCE],
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&libnbc_module->NBC_Dict_size[NBC_REDUCE]);
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}
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} else {
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NBC_Error("error in dict_insert() (%i)", res);
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free (args);
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}
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}
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} else {
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/* found schedule */
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schedule = found->schedule;
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OBJ_RETAIN(schedule);
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}
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#endif
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res = NBC_Start(handle, schedule);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return res;
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}
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*request = (ompi_request_t *) handle;
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/* tmpbuf is freed with the handle */
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return OMPI_SUCCESS;
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}
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int ompi_coll_libnbc_ireduce_inter(const void* sendbuf, void* recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, int root, struct ompi_communicator_t *comm, ompi_request_t ** request,
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struct mca_coll_base_module_2_1_0_t *module) {
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int rank, res, rsize;
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NBC_Schedule *schedule;
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MPI_Aint ext;
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NBC_Handle *handle;
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ompi_coll_libnbc_module_t *libnbc_module = (ompi_coll_libnbc_module_t*) module;
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rank = ompi_comm_rank (comm);
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rsize = ompi_comm_remote_size (comm);
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res = MPI_Type_extent (datatype, &ext);
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if (MPI_SUCCESS != res) {
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NBC_Error("MPI Error in MPI_Type_extent() (%i)", res);
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return res;
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}
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res = NBC_Init_handle(comm, &handle, libnbc_module);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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handle->tmpbuf = malloc (ext * count);
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if (OPAL_UNLIKELY(NULL == handle->tmpbuf)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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schedule = OBJ_NEW(NBC_Schedule);
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if (OPAL_UNLIKELY(NULL == schedule)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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res = red_sched_linear (rank, rsize, root, sendbuf, recvbuf, count, datatype, op, schedule, handle);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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res = NBC_Sched_commit(schedule);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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res = NBC_Start(handle, schedule);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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NBC_Return_handle (handle);
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return OMPI_ERR_OUT_OF_RESOURCE;
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}
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*request = (ompi_request_t *) handle;
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/* tmpbuf is freed with the handle */
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return OMPI_SUCCESS;
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}
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/* binomial reduce
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* working principle:
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* - each node gets a virtual rank vrank
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* - the 'root' node get vrank 0
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* - node 0 gets the vrank of the 'root'
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* - all other ranks stay identical (they do not matter)
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*
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* Algorithm:
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* pairwise exchange
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* round r:
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* grp = rank % 2^r
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* if grp == 0: receive from rank + 2^(r-1) if it exists and reduce value
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* if grp == 1: send to rank - 2^(r-1) and exit function
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*
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* do this for R=log_2(p) rounds
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*
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*/
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#define RANK2VRANK(rank, vrank, root) \
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{ \
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vrank = rank; \
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if (rank == 0) vrank = root; \
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if (rank == root) vrank = 0; \
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}
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#define VRANK2RANK(rank, vrank, root) \
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{ \
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rank = vrank; \
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if (vrank == 0) rank = root; \
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if (vrank == root) rank = 0; \
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}
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static inline int red_sched_binomial (int rank, int p, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, void *redbuf, NBC_Schedule *schedule, NBC_Handle *handle) {
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int vrank, vpeer, peer, res, maxr;
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RANK2VRANK(rank, vrank, root);
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maxr = (int)ceil((log((double)p)/LOG2));
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for (int r = 1, firstred = 1 ; r <= maxr ; ++r) {
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if ((vrank % (1 << r)) == 0) {
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/* we have to receive this round */
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vpeer = vrank + (1 << (r - 1));
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VRANK2RANK(peer, vpeer, root)
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if (peer < p) {
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/* we have to wait until we have the data */
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res = NBC_Sched_recv (0, true, count, datatype, peer, schedule, true);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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/* perform the reduce in my local buffer */
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/* this cannot be done until handle->tmpbuf is unused :-( so barrier after the op */
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if (firstred) {
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if (rank == root) {
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/* root is the only one who reduces in the receivebuffer
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* take data from sendbuf in first round - save copy */
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res = NBC_Sched_op (recvbuf, false, sendbuf, false, 0, true, count, datatype, op, schedule, true);
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} else {
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/* all others may not have a receive buffer
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* take data from sendbuf in first round - save copy */
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res = NBC_Sched_op ((char *) redbuf - (intptr_t) handle->tmpbuf, true, sendbuf, false, 0, true, count,
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datatype, op, schedule, true);
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}
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firstred = 0;
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} else {
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if(rank == root) {
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/* root is the only one who reduces in the receivebuffer */
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res = NBC_Sched_op (recvbuf, false, recvbuf, false, 0, true, count, datatype, op, schedule, true);
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} else {
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/* all others may not have a receive buffer */
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res = NBC_Sched_op ((char *) redbuf - (intptr_t) handle->tmpbuf, true, (char *) redbuf - (intptr_t) handle->tmpbuf,
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true, 0, true, count, datatype, op, schedule, true);
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}
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}
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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}
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} else {
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/* we have to send this round */
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vpeer = vrank - (1 << (r - 1));
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VRANK2RANK(peer, vpeer, root)
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if (firstred) {
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/* we did not reduce anything */
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res = NBC_Sched_send (sendbuf, false, count, datatype, peer, schedule, false);
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} else {
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/* we have to use the redbuf the root (which works in receivebuf) is never sending .. */
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res = NBC_Sched_send ((char *) redbuf - (intptr_t) handle->tmpbuf, true, count, datatype, peer, schedule,
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false);
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}
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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/* leave the game */
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break;
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}
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}
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return OMPI_SUCCESS;
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}
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/* chain send ... */
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static inline int red_sched_chain (int rank, int p, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, int ext, int size, NBC_Schedule *schedule, NBC_Handle *handle, int fragsize) {
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int res, vrank, rpeer, speer, numfrag, fragcount, thiscount;
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long offset;
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RANK2VRANK(rank, vrank, root);
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VRANK2RANK(rpeer, vrank+1, root);
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VRANK2RANK(speer, vrank-1, root);
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if (0 == count) {
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return OMPI_SUCCESS;
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}
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numfrag = count * size / fragsize;
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if ((count * size) % fragsize != 0) {
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numfrag++;
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}
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fragcount = count / numfrag;
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for (int fragnum = 0 ; fragnum < numfrag ; ++fragnum) {
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offset = fragnum * fragcount * ext;
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thiscount = fragcount;
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if(fragnum == numfrag - 1) {
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/* last fragment may not be full */
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thiscount = count - fragcount * fragnum;
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}
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/* last node does not recv */
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if (vrank != p-1) {
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res = NBC_Sched_recv ((char *) offset, true, thiscount, datatype, rpeer, schedule, true);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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/* root reduces into receivebuf */
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if(vrank == 0) {
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res = NBC_Sched_op ((char *) recvbuf + offset, false, (char *) sendbuf + offset, false, (char *) offset, true,
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thiscount, datatype, op, schedule, true);
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} else {
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res = NBC_Sched_op ((char *) offset, true, (char *) sendbuf + offset, false, (char *) offset, true, thiscount,
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datatype, op, schedule, true);
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}
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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}
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/* root does not send */
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if (vrank != 0) {
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/* rank p-1 has to send out of sendbuffer :) */
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/* the barrier here seems awkward but isn't!!!! */
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if (vrank == p-1) {
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res = NBC_Sched_send ((char *) sendbuf + offset, false, thiscount, datatype, speer, schedule, true);
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} else {
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res = NBC_Sched_send ((char *) offset, true, thiscount, datatype, speer, schedule, true);
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}
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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}
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}
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return OMPI_SUCCESS;
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}
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/* simple linear algorithm for intercommunicators */
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static inline int red_sched_linear (int rank, int rsize, int root, const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype,
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MPI_Op op, NBC_Schedule *schedule, NBC_Handle *handle) {
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int res;
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if (0 == count) {
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return OMPI_SUCCESS;
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}
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if (MPI_ROOT == root) {
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res = NBC_Sched_recv (recvbuf, false, count, datatype, 0, schedule, true);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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for (int peer = 1 ; peer < rsize ; ++peer) {
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res = NBC_Sched_recv (0, true, count, datatype, peer, schedule, true);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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res = NBC_Sched_op (recvbuf, false, 0, true, recvbuf, false, count, datatype, op, schedule, true);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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}
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} else if (MPI_PROC_NULL != root) {
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res = NBC_Sched_send (sendbuf, false, count, datatype, root, schedule, false);
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if (OPAL_UNLIKELY(OMPI_SUCCESS != res)) {
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return res;
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}
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}
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return OMPI_SUCCESS;
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}
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