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openmpi/orte/mca/iof/base/iof_base_output.c
Ralph Castain 6509f60929 Complete the memprobe support. This provides a new scaling tool called "mpi_memprobe" that samples the memory footprint of the local daemon and the client procs, and then reports the results. The output contains the footprint of the daemon on each node, plus the average footprint of the client procs on that node.
Samples are taken after MPI_Init, and then again after MPI_Barrier. This allows the user to see memory consumption caused by add_procs, as well as any modex contribution from forming connections if pmix_base_async_modex is given.

Using the probe simply involves executing it via mpirun, with however many copies you want per node. Example:

$ mpirun -npernode 2 ./mpi_memprobe
Sampling memory usage after MPI_Init
Data for node rhc001
	Daemon: 12.483398
	Client: 6.514648

Data for node rhc002
	Daemon: 11.865234
	Client: 4.643555

Sampling memory usage after MPI_Barrier
Data for node rhc001
	Daemon: 12.520508
	Client: 6.576660

Data for node rhc002
	Daemon: 11.879883
	Client: 4.703125

Note that the client value on node rhc001 is larger - this is where rank=0 is housed, and apparently it gets a larger footprint for some reason.

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2017-01-05 10:32:17 -08:00

364 строки
14 KiB
C

/*
* Copyright (c) 2004-2007 The Trustees of Indiana University and Indiana
* University Research and Technology
* Corporation. All rights reserved.
* Copyright (c) 2004-2006 The University of Tennessee and The University
* of Tennessee Research Foundation. All rights
* reserved.
* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
* University of Stuttgart. All rights reserved.
* Copyright (c) 2004-2005 The Regents of the University of California.
* All rights reserved.
* Copyright (c) 2008 Cisco Systems, Inc. All rights reserved.
* Copyright (c) 2017 Intel, Inc. All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*
* These symbols are in a file by themselves to provide nice linker
* semantics. Since linkers generally pull in symbols by object
* files, keeping these symbols as the only symbols in this file
* prevents utility programs such as "ompi_info" from having to import
* entire components just to query their version and parameters.
*/
#include "orte_config.h"
#include "orte/constants.h"
#include <string.h>
#include <stdlib.h>
#ifdef HAVE_UNISTD_H
#include <unistd.h>
#endif
#include <time.h>
#include <errno.h>
#include "opal/util/output.h"
#include "orte/util/name_fns.h"
#include "orte/runtime/orte_globals.h"
#include "orte/mca/errmgr/errmgr.h"
#include "orte/mca/state/state.h"
#include "orte/mca/iof/base/base.h"
int orte_iof_base_write_output(const orte_process_name_t *name, orte_iof_tag_t stream,
const unsigned char *data, int numbytes,
orte_iof_write_event_t *channel)
{
char starttag[ORTE_IOF_BASE_TAG_MAX], endtag[ORTE_IOF_BASE_TAG_MAX], *suffix;
orte_iof_write_output_t *output;
int i, j, k, starttaglen, endtaglen, num_buffered;
bool endtagged;
char qprint[10];
OPAL_OUTPUT_VERBOSE((1, orte_iof_base_framework.framework_output,
"%s write:output setting up to write %d bytes to %s for %s on fd %d",
ORTE_NAME_PRINT(ORTE_PROC_MY_NAME), numbytes,
(ORTE_IOF_STDIN & stream) ? "stdin" : ((ORTE_IOF_STDOUT & stream) ? "stdout" : ((ORTE_IOF_STDERR & stream) ? "stderr" : "stddiag")),
ORTE_NAME_PRINT(name),
(NULL == channel) ? -1 : channel->fd));
/* setup output object */
output = OBJ_NEW(orte_iof_write_output_t);
/* write output data to the corresponding tag */
if (ORTE_IOF_STDIN & stream) {
/* copy over the data to be written */
if (0 < numbytes) {
/* don't copy 0 bytes - we just need to pass
* the zero bytes so the fd can be closed
* after it writes everything out
*/
memcpy(output->data, data, numbytes);
}
output->numbytes = numbytes;
goto process;
} else if (ORTE_IOF_STDOUT & stream) {
/* write the bytes to stdout */
suffix = "stdout";
} else if (ORTE_IOF_STDERR & stream) {
/* write the bytes to stderr */
suffix = "stderr";
} else if (ORTE_IOF_STDDIAG & stream) {
/* write the bytes to stderr */
suffix = "stddiag";
} else {
/* error - this should never happen */
ORTE_ERROR_LOG(ORTE_ERR_VALUE_OUT_OF_BOUNDS);
OPAL_OUTPUT_VERBOSE((1, orte_iof_base_framework.framework_output,
"%s stream %0x", ORTE_NAME_PRINT(ORTE_PROC_MY_NAME), stream));
return ORTE_ERR_VALUE_OUT_OF_BOUNDS;
}
/* if this is to be xml tagged, create a tag with the correct syntax - we do not allow
* timestamping of xml output
*/
if (orte_xml_output) {
snprintf(starttag, ORTE_IOF_BASE_TAG_MAX, "<%s rank=\"%s\">", suffix, ORTE_VPID_PRINT(name->vpid));
snprintf(endtag, ORTE_IOF_BASE_TAG_MAX, "</%s>", suffix);
goto construct;
}
/* if we are to timestamp output, start the tag with that */
if (orte_timestamp_output) {
time_t mytime;
char *cptr;
/* get the timestamp */
time(&mytime);
cptr = ctime(&mytime);
cptr[strlen(cptr)-1] = '\0'; /* remove trailing newline */
if (orte_tag_output) {
/* if we want it tagged as well, use both */
snprintf(starttag, ORTE_IOF_BASE_TAG_MAX, "%s[%s,%s]<%s>:",
cptr, ORTE_LOCAL_JOBID_PRINT(name->jobid),
ORTE_VPID_PRINT(name->vpid), suffix);
} else {
/* only use timestamp */
snprintf(starttag, ORTE_IOF_BASE_TAG_MAX, "%s<%s>:", cptr, suffix);
}
/* no endtag for this option */
memset(endtag, '\0', ORTE_IOF_BASE_TAG_MAX);
goto construct;
}
if (orte_tag_output) {
snprintf(starttag, ORTE_IOF_BASE_TAG_MAX, "[%s,%s]<%s>:",
ORTE_LOCAL_JOBID_PRINT(name->jobid),
ORTE_VPID_PRINT(name->vpid), suffix);
/* no endtag for this option */
memset(endtag, '\0', ORTE_IOF_BASE_TAG_MAX);
goto construct;
}
/* if we get here, then the data is not to be tagged - just copy it
* and move on to processing
*/
if (0 < numbytes) {
/* don't copy 0 bytes - we just need to pass
* the zero bytes so the fd can be closed
* after it writes everything out
*/
memcpy(output->data, data, numbytes);
}
output->numbytes = numbytes;
goto process;
construct:
starttaglen = strlen(starttag);
endtaglen = strlen(endtag);
endtagged = false;
/* start with the tag */
for (j=0, k=0; j < starttaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = starttag[j];
}
/* cycle through the data looking for <cr>
* and replace those with the tag
*/
for (i=0; i < numbytes && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; i++) {
if (orte_xml_output) {
if ('&' == data[i]) {
if (k+5 >= ORTE_IOF_BASE_TAGGED_OUT_MAX) {
ORTE_ERROR_LOG(ORTE_ERR_OUT_OF_RESOURCE);
goto process;
}
snprintf(qprint, 10, "&amp;");
for (j=0; j < (int)strlen(qprint) && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = qprint[j];
}
} else if ('<' == data[i]) {
if (k+4 >= ORTE_IOF_BASE_TAGGED_OUT_MAX) {
ORTE_ERROR_LOG(ORTE_ERR_OUT_OF_RESOURCE);
goto process;
}
snprintf(qprint, 10, "&lt;");
for (j=0; j < (int)strlen(qprint) && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = qprint[j];
}
} else if ('>' == data[i]) {
if (k+4 >= ORTE_IOF_BASE_TAGGED_OUT_MAX) {
ORTE_ERROR_LOG(ORTE_ERR_OUT_OF_RESOURCE);
goto process;
}
snprintf(qprint, 10, "&gt;");
for (j=0; j < (int)strlen(qprint) && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = qprint[j];
}
} else if (data[i] < 32 || data[i] > 127) {
/* this is a non-printable character, so escape it too */
if (k+7 >= ORTE_IOF_BASE_TAGGED_OUT_MAX) {
ORTE_ERROR_LOG(ORTE_ERR_OUT_OF_RESOURCE);
goto process;
}
snprintf(qprint, 10, "&#%03d;", (int)data[i]);
for (j=0; j < (int)strlen(qprint) && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = qprint[j];
}
/* if this was a \n, then we also need to break the line with the end tag */
if ('\n' == data[i] && (k+endtaglen+1) < ORTE_IOF_BASE_TAGGED_OUT_MAX) {
/* we need to break the line with the end tag */
for (j=0; j < endtaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX-1; j++) {
output->data[k++] = endtag[j];
}
/* move the <cr> over */
output->data[k++] = '\n';
/* if this isn't the end of the data buffer, add a new start tag */
if (i < numbytes-1 && (k+starttaglen) < ORTE_IOF_BASE_TAGGED_OUT_MAX) {
for (j=0; j < starttaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = starttag[j];
endtagged = false;
}
} else {
endtagged = true;
}
}
} else {
output->data[k++] = data[i];
}
} else {
if ('\n' == data[i]) {
/* we need to break the line with the end tag */
for (j=0; j < endtaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX-1; j++) {
output->data[k++] = endtag[j];
}
/* move the <cr> over */
output->data[k++] = '\n';
/* if this isn't the end of the data buffer, add a new start tag */
if (i < numbytes-1) {
for (j=0; j < starttaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX; j++) {
output->data[k++] = starttag[j];
endtagged = false;
}
} else {
endtagged = true;
}
} else {
output->data[k++] = data[i];
}
}
}
if (!endtagged && k < ORTE_IOF_BASE_TAGGED_OUT_MAX) {
/* need to add an endtag */
for (j=0; j < endtaglen && k < ORTE_IOF_BASE_TAGGED_OUT_MAX-1; j++) {
output->data[k++] = endtag[j];
}
output->data[k] = '\n';
}
output->numbytes = k;
process:
/* add this data to the write list for this fd */
opal_list_append(&channel->outputs, &output->super);
/* record how big the buffer is */
num_buffered = opal_list_get_size(&channel->outputs);
/* is the write event issued? */
if (!channel->pending) {
/* issue it */
OPAL_OUTPUT_VERBOSE((1, orte_iof_base_framework.framework_output,
"%s write:output adding write event",
ORTE_NAME_PRINT(ORTE_PROC_MY_NAME)));
opal_event_add(channel->ev, 0);
channel->pending = true;
}
return num_buffered;
}
void orte_iof_base_static_dump_output(orte_iof_read_event_t *rev)
{
bool dump;
int num_written;
orte_iof_write_event_t *wev;
orte_iof_write_output_t *output;
if (NULL != rev->sink) {
wev = rev->sink->wev;
if (NULL != wev && !opal_list_is_empty(&wev->outputs)) {
dump = false;
/* make one last attempt to write this out */
while (NULL != (output = (orte_iof_write_output_t*)opal_list_remove_first(&wev->outputs))) {
if (!dump) {
num_written = write(wev->fd, output->data, output->numbytes);
if (num_written < output->numbytes) {
/* don't retry - just cleanout the list and dump it */
dump = true;
}
}
OBJ_RELEASE(output);
}
}
}
}
void orte_iof_base_write_handler(int fd, short event, void *cbdata)
{
orte_iof_sink_t *sink = (orte_iof_sink_t*)cbdata;
orte_iof_write_event_t *wev = sink->wev;
opal_list_item_t *item;
orte_iof_write_output_t *output;
int num_written;
OPAL_OUTPUT_VERBOSE((1, orte_iof_base_framework.framework_output,
"%s write:handler writing data to %d",
ORTE_NAME_PRINT(ORTE_PROC_MY_NAME),
wev->fd));
while (NULL != (item = opal_list_remove_first(&wev->outputs))) {
output = (orte_iof_write_output_t*)item;
if (0 == output->numbytes) {
/* indicates we are to close this stream */
OBJ_RELEASE(sink);
return;
}
num_written = write(wev->fd, output->data, output->numbytes);
if (num_written < 0) {
if (EAGAIN == errno || EINTR == errno) {
/* push this item back on the front of the list */
opal_list_prepend(&wev->outputs, item);
/* if the list is getting too large, abort */
if (orte_iof_base.output_limit < opal_list_get_size(&wev->outputs)) {
opal_output(0, "IO Forwarding is running too far behind - something is blocking us from writing");
ORTE_FORCED_TERMINATE(ORTE_ERROR_DEFAULT_EXIT_CODE);
goto ABORT;
}
/* leave the write event running so it will call us again
* when the fd is ready.
*/
return;
}
/* otherwise, something bad happened so all we can do is abort
* this attempt
*/
OBJ_RELEASE(output);
goto ABORT;
} else if (num_written < output->numbytes) {
/* incomplete write - adjust data to avoid duplicate output */
memmove(output->data, &output->data[num_written], output->numbytes - num_written);
/* adjust the number of bytes remaining to be written */
output->numbytes -= num_written;
/* push this item back on the front of the list */
opal_list_prepend(&wev->outputs, item);
/* if the list is getting too large, abort */
if (orte_iof_base.output_limit < opal_list_get_size(&wev->outputs)) {
opal_output(0, "IO Forwarding is running too far behind - something is blocking us from writing");
ORTE_FORCED_TERMINATE(ORTE_ERROR_DEFAULT_EXIT_CODE);
goto ABORT;
}
/* leave the write event running so it will call us again
* when the fd is ready
*/
return;
}
OBJ_RELEASE(output);
}
ABORT:
opal_event_del(wev->ev);
wev->pending = false;
}