cf377db823
Features: - Support for an override parameter file (openmpi-mca-param-override.conf). Variable values in this file can not be overridden by any file or environment value. - Support for boolean, unsigned, and unsigned long long variables. - Support for true/false values. - Support for enumerations on integer variables. - Support for MPIT scope, verbosity, and binding. - Support for command line source. - Support for setting variable source via the environment using OMPI_MCA_SOURCE_<var name>=source (either command or file:filename) - Cleaner API. - Support for variable groups (equivalent to MPIT categories). Notes: - Variables must be created with a backing store (char **, int *, or bool *) that must live at least as long as the variable. - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of mca_base_var_set_value() to change the value. - String values are duplicated when the variable is registered. It is up to the caller to free the original value if necessary. The new value will be freed by the mca_base_var system and must not be freed by the user. - Variables with constant scope may not be settable. - Variable groups (and all associated variables) are deregistered when the component is closed or the component repository item is freed. This prevents a segmentation fault from accessing a variable after its component is unloaded. - After some discussion we decided we should remove the automatic registration of component priority variables. Few component actually made use of this feature. - The enumerator interface was updated to be general enough to handle future uses of the interface. - The code to generate ompi_info output has been moved into the MCA variable system. See mca_base_var_dump(). opal: update core and components to mca_base_var system orte: update core and components to mca_base_var system ompi: update core and components to mca_base_var system This commit also modifies the rmaps framework. The following variables were moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode, rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables. This commit was SVN r28236.
849 строки
37 KiB
C
849 строки
37 KiB
C
/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
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/*
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* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
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* Copyright (c) 2004-2012 The University of Tennessee and The University
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* of Tennessee Research Foundation. All rights
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* reserved.
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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* University of Stuttgart. All rights reserved.
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* Copyright (c) 2004-2005 The Regents of the University of California.
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* All rights reserved.
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* Copyright (c) 2009 University of Houston. All rights reserved.
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* Copyright (c) 2013 Los Alamos National Security, LLC. All Rights
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* reserved.
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* $COPYRIGHT$
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*
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* Additional copyrights may follow
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*
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* $HEADER$
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*/
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#include "ompi_config.h"
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#include "mpi.h"
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#include "ompi/constants.h"
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#include "ompi/datatype/ompi_datatype.h"
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#include "ompi/communicator/communicator.h"
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#include "ompi/mca/coll/coll.h"
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#include "ompi/mca/coll/base/coll_tags.h"
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#include "coll_tuned.h"
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#include "coll_tuned_topo.h"
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#include "coll_tuned_util.h"
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/* allgatherv algorithm variables */
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static int coll_tuned_allgatherv_algorithm_count = 5;
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static int coll_tuned_allgatherv_forced_algorithm = 0;
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static int coll_tuned_allgatherv_segment_size = 0;
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static int coll_tuned_allgatherv_tree_fanout;
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static int coll_tuned_allgatherv_chain_fanout;
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/* valid values for coll_tuned_allgatherv_forced_algorithm */
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static mca_base_var_enum_value_t allgatherv_algorithms[] = {
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{0, "ignore"},
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{1, "default"},
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{2, "bruck"},
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{3, "ring"},
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{4, "neighbor"},
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{5, "two_proc"},
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{0, NULL}
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};
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/*
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* ompi_coll_tuned_allgatherv_intra_bruck
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*
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* Function: allgather using O(log(N)) steps.
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* Accepts: Same arguments as MPI_Allgather
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* Returns: MPI_SUCCESS or error code
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*
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* Description: Variation to All-to-all algorithm described by Bruck et al.in
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* "Efficient Algorithms for All-to-all Communications
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* in Multiport Message-Passing Systems"
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* Note: Unlike in case of allgather implementation, we relay on
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* indexed datatype to select buffers appropriately.
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* The only additional memory requirement is for creation of
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* temporary datatypes.
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* Example on 7 nodes (memory lay out need not be in-order)
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* Initial set up:
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* # 0 1 2 3 4 5 6
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* [0] [ ] [ ] [ ] [ ] [ ] [ ]
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* [ ] [1] [ ] [ ] [ ] [ ] [ ]
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* [ ] [ ] [2] [ ] [ ] [ ] [ ]
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* [ ] [ ] [ ] [3] [ ] [ ] [ ]
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* [ ] [ ] [ ] [ ] [4] [ ] [ ]
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* [ ] [ ] [ ] [ ] [ ] [5] [ ]
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* [ ] [ ] [ ] [ ] [ ] [ ] [6]
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* Step 0: send message to (rank - 2^0), receive message from (rank + 2^0)
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* # 0 1 2 3 4 5 6
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* [0] [ ] [ ] [ ] [ ] [ ] [0]
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* [1] [1] [ ] [ ] [ ] [ ] [ ]
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* [ ] [2] [2] [ ] [ ] [ ] [ ]
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* [ ] [ ] [3] [3] [ ] [ ] [ ]
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* [ ] [ ] [ ] [4] [4] [ ] [ ]
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* [ ] [ ] [ ] [ ] [5] [5] [ ]
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* [ ] [ ] [ ] [ ] [ ] [6] [6]
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* Step 1: send message to (rank - 2^1), receive message from (rank + 2^1).
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* message contains all blocks from (rank) .. (rank + 2^2) with
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* wrap around.
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* # 0 1 2 3 4 5 6
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* [0] [ ] [ ] [ ] [0] [0] [0]
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* [1] [1] [ ] [ ] [ ] [1] [1]
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* [2] [2] [2] [ ] [ ] [ ] [2]
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* [3] [3] [3] [3] [ ] [ ] [ ]
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* [ ] [4] [4] [4] [4] [ ] [ ]
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* [ ] [ ] [5] [5] [5] [5] [ ]
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* [ ] [ ] [ ] [6] [6] [6] [6]
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* Step 2: send message to (rank - 2^2), receive message from (rank + 2^2).
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* message size is "all remaining blocks"
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* # 0 1 2 3 4 5 6
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* [0] [0] [0] [0] [0] [0] [0]
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* [1] [1] [1] [1] [1] [1] [1]
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* [2] [2] [2] [2] [2] [2] [2]
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* [3] [3] [3] [3] [3] [3] [3]
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* [4] [4] [4] [4] [4] [4] [4]
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* [5] [5] [5] [5] [5] [5] [5]
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* [6] [6] [6] [6] [6] [6] [6]
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*/
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int ompi_coll_tuned_allgatherv_intra_bruck(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void *rbuf, int *rcounts,
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int *rdispls,
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struct ompi_datatype_t *rdtype,
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struct ompi_communicator_t *comm,
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mca_coll_base_module_t *module)
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{
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int line = -1, err = 0, rank, size, sendto, recvfrom, distance, blockcount, i;
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int *new_rcounts = NULL, *new_rdispls = NULL, *new_scounts = NULL, *new_sdispls = NULL;
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ptrdiff_t slb, rlb, sext, rext;
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char *tmpsend = NULL, *tmprecv = NULL;
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struct ompi_datatype_t *new_rdtype, *new_sdtype;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"coll:tuned:allgather_intra_bruck rank %d", rank));
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err = ompi_datatype_get_extent (sdtype, &slb, &sext);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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err = ompi_datatype_get_extent (rdtype, &rlb, &rext);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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/* Initialization step:
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- if send buffer is not MPI_IN_PLACE, copy send buffer to block rank of
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the receive buffer.
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*/
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tmprecv = (char*) rbuf + (ptrdiff_t)rdispls[rank] * rext;
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if (MPI_IN_PLACE != sbuf) {
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tmpsend = (char*) sbuf;
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err = ompi_datatype_sndrcv(tmpsend, scount, sdtype,
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tmprecv, rcounts[rank], rdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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/* Communication step:
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At every step i, rank r:
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- doubles the distance
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- sends message with blockcount blocks, (rbuf[rank] .. rbuf[rank + 2^i])
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to rank (r - distance)
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- receives message of blockcount blocks,
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(rbuf[r + distance] ... rbuf[(r+distance) + 2^i]) from
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rank (r + distance)
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- blockcount doubles until the last step when only the remaining data is
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exchanged.
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*/
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blockcount = 1;
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tmpsend = (char*) rbuf;
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new_rcounts = (int*) calloc(4*size, sizeof(int));
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if (NULL == new_rcounts) { err = -1; line = __LINE__; goto err_hndl; }
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new_rdispls = new_rcounts + size;
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new_scounts = new_rdispls + size;
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new_sdispls = new_scounts + size;
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for (distance = 1; distance < size; distance<<=1) {
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recvfrom = (rank + distance) % size;
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sendto = (rank - distance + size) % size;
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if (distance <= (size >> 1)) {
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blockcount = distance;
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} else {
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blockcount = size - distance;
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}
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/* create send and receive datatypes */
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for (i = 0; i < blockcount; i++) {
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const int tmp_srank = (rank + i) % size;
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const int tmp_rrank = (recvfrom + i) % size;
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new_scounts[i] = rcounts[tmp_srank];
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new_sdispls[i] = rdispls[tmp_srank];
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new_rcounts[i] = rcounts[tmp_rrank];
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new_rdispls[i] = rdispls[tmp_rrank];
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}
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err = ompi_datatype_create_indexed(blockcount, new_scounts, new_sdispls,
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rdtype, &new_sdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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err = ompi_datatype_create_indexed(blockcount, new_rcounts, new_rdispls,
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rdtype, &new_rdtype);
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err = ompi_datatype_commit(&new_sdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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err = ompi_datatype_commit(&new_rdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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/* Sendreceive */
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err = ompi_coll_tuned_sendrecv(rbuf, 1, new_sdtype, sendto,
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MCA_COLL_BASE_TAG_ALLGATHERV,
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rbuf, 1, new_rdtype, recvfrom,
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MCA_COLL_BASE_TAG_ALLGATHERV,
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comm, MPI_STATUS_IGNORE, rank);
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ompi_datatype_destroy(&new_sdtype);
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ompi_datatype_destroy(&new_rdtype);
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}
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free(new_rcounts);
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return OMPI_SUCCESS;
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err_hndl:
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if( NULL != new_rcounts ) free(new_rcounts);
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OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
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__FILE__, line, err, rank));
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return err;
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}
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/*
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* ompi_coll_tuned_allgatherv_intra_ring
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*
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* Function: allgatherv using O(N) steps.
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* Accepts: Same arguments as MPI_Allgatherv
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* Returns: MPI_SUCCESS or error code
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*
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* Description: Ring algorithm for all gather.
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* At every step i, rank r receives message from rank (r - 1)
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* containing data from rank (r - i - 1) and sends message to rank
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* (r + 1) containing data from rank (r - i), with wrap arounds.
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* Memory requirements:
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* No additional memory requirements.
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*
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*/
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int ompi_coll_tuned_allgatherv_intra_ring(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void* rbuf, int *rcounts, int *rdisps,
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struct ompi_datatype_t *rdtype,
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struct ompi_communicator_t *comm,
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mca_coll_base_module_t *module)
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{
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int line = -1, rank, size, sendto, recvfrom, i, recvdatafrom, senddatafrom, err = 0;
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ptrdiff_t slb, rlb, sext, rext;
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char *tmpsend = NULL, *tmprecv = NULL;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"coll:tuned:allgatherv_intra_ring rank %d", rank));
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err = ompi_datatype_get_extent (sdtype, &slb, &sext);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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err = ompi_datatype_get_extent (rdtype, &rlb, &rext);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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/* Initialization step:
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- if send buffer is not MPI_IN_PLACE, copy send buffer to
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the appropriate block of receive buffer
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*/
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tmprecv = (char*) rbuf + (ptrdiff_t)rdisps[rank] * rext;
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if (MPI_IN_PLACE != sbuf) {
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tmpsend = (char*) sbuf;
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err = ompi_datatype_sndrcv(tmpsend, scount, sdtype,
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tmprecv, rcounts[rank], rdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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/* Communication step:
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At every step i: 0 .. (P-1), rank r:
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- receives message from [(r - 1 + size) % size] containing data from rank
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[(r - i - 1 + size) % size]
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- sends message to rank [(r + 1) % size] containing data from rank
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[(r - i + size) % size]
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- sends message which starts at begining of rbuf and has size
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*/
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sendto = (rank + 1) % size;
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recvfrom = (rank - 1 + size) % size;
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for (i = 0; i < size - 1; i++) {
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recvdatafrom = (rank - i - 1 + size) % size;
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senddatafrom = (rank - i + size) % size;
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tmprecv = (char*)rbuf + rdisps[recvdatafrom] * rext;
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tmpsend = (char*)rbuf + rdisps[senddatafrom] * rext;
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/* Sendreceive */
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err = ompi_coll_tuned_sendrecv(tmpsend, rcounts[senddatafrom], rdtype,
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sendto, MCA_COLL_BASE_TAG_ALLGATHERV,
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tmprecv, rcounts[recvdatafrom], rdtype,
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recvfrom, MCA_COLL_BASE_TAG_ALLGATHERV,
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comm, MPI_STATUS_IGNORE, rank);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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return OMPI_SUCCESS;
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err_hndl:
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OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
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__FILE__, line, err, rank));
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return err;
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}
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/*
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* ompi_coll_tuned_allgatherv_intra_neighborexchange
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*
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* Function: allgatherv using N/2 steps (O(N))
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* Accepts: Same arguments as MPI_Allgatherv
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* Returns: MPI_SUCCESS or error code
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*
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* Description: Neighbor Exchange algorithm for allgather adapted for
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* allgatherv.
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* Described by Chen et.al. in
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* "Performance Evaluation of Allgather Algorithms on
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* Terascale Linux Cluster with Fast Ethernet",
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* Proceedings of the Eighth International Conference on
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* High-Performance Computing inn Asia-Pacific Region
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* (HPCASIA'05), 2005
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*
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* Rank r exchanges message with one of its neighbors and
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* forwards the data further in the next step.
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*
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* No additional memory requirements.
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*
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* Limitations: Algorithm works only on even number of processes.
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* For odd number of processes we switch to ring algorithm.
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*
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* Example on 6 nodes:
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* Initial state
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* # 0 1 2 3 4 5
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* [0] [ ] [ ] [ ] [ ] [ ]
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* [ ] [1] [ ] [ ] [ ] [ ]
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* [ ] [ ] [2] [ ] [ ] [ ]
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* [ ] [ ] [ ] [3] [ ] [ ]
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* [ ] [ ] [ ] [ ] [4] [ ]
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* [ ] [ ] [ ] [ ] [ ] [5]
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* Step 0:
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* # 0 1 2 3 4 5
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* [0] [0] [ ] [ ] [ ] [ ]
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* [1] [1] [ ] [ ] [ ] [ ]
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* [ ] [ ] [2] [2] [ ] [ ]
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* [ ] [ ] [3] [3] [ ] [ ]
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* [ ] [ ] [ ] [ ] [4] [4]
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* [ ] [ ] [ ] [ ] [5] [5]
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* Step 1:
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* # 0 1 2 3 4 5
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* [0] [0] [0] [ ] [ ] [0]
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* [1] [1] [1] [ ] [ ] [1]
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* [ ] [2] [2] [2] [2] [ ]
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* [ ] [3] [3] [3] [3] [ ]
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* [4] [ ] [ ] [4] [4] [4]
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* [5] [ ] [ ] [5] [5] [5]
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* Step 2:
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* # 0 1 2 3 4 5
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* [0] [0] [0] [0] [0] [0]
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* [1] [1] [1] [1] [1] [1]
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* [2] [2] [2] [2] [2] [2]
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* [3] [3] [3] [3] [3] [3]
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* [4] [4] [4] [4] [4] [4]
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* [5] [5] [5] [5] [5] [5]
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*/
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int
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ompi_coll_tuned_allgatherv_intra_neighborexchange(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void* rbuf, int *rcounts, int *rdispls,
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struct ompi_datatype_t *rdtype,
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struct ompi_communicator_t *comm,
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mca_coll_base_module_t *module)
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{
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int line = -1, rank, size, i, even_rank, err = 0;
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int neighbor[2], offset_at_step[2], recv_data_from[2], send_data_from;
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int new_scounts[2], new_sdispls[2], new_rcounts[2], new_rdispls[2];
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ptrdiff_t slb, rlb, sext, rext;
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char *tmpsend = NULL, *tmprecv = NULL;
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struct ompi_datatype_t *new_rdtype, *new_sdtype;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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if (size % 2) {
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"coll:tuned:allgatherv_intra_neighborexchange WARNING: odd size %d, switching to ring algorithm",
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size));
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return ompi_coll_tuned_allgatherv_intra_ring(sbuf, scount, sdtype,
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rbuf, rcounts,
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rdispls, rdtype,
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comm, module);
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}
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OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:allgatherv_intra_neighborexchange rank %d", rank));
|
|
|
|
err = ompi_datatype_get_extent (sdtype, &slb, &sext);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
err = ompi_datatype_get_extent (rdtype, &rlb, &rext);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
/* Initialization step:
|
|
- if send buffer is not MPI_IN_PLACE, copy send buffer to
|
|
the appropriate block of receive buffer
|
|
*/
|
|
tmprecv = (char*) rbuf + (ptrdiff_t)rdispls[rank] * rext;
|
|
if (MPI_IN_PLACE != sbuf) {
|
|
tmpsend = (char*) sbuf;
|
|
err = ompi_datatype_sndrcv(tmpsend, scount, sdtype,
|
|
tmprecv, rcounts[rank], rdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
}
|
|
|
|
/* Determine neighbors, order in which blocks will arrive, etc. */
|
|
even_rank = !(rank % 2);
|
|
if (even_rank) {
|
|
neighbor[0] = (rank + 1) % size;
|
|
neighbor[1] = (rank - 1 + size) % size;
|
|
recv_data_from[0] = rank;
|
|
recv_data_from[1] = rank;
|
|
offset_at_step[0] = (+2);
|
|
offset_at_step[1] = (-2);
|
|
} else {
|
|
neighbor[0] = (rank - 1 + size) % size;
|
|
neighbor[1] = (rank + 1) % size;
|
|
recv_data_from[0] = neighbor[0];
|
|
recv_data_from[1] = neighbor[0];
|
|
offset_at_step[0] = (-2);
|
|
offset_at_step[1] = (+2);
|
|
}
|
|
|
|
/* Communication loop:
|
|
- First step is special: exchange a single block with neighbor[0].
|
|
- Rest of the steps:
|
|
update recv_data_from according to offset, and
|
|
exchange two blocks with appropriate neighbor.
|
|
the send location becomes previous receve location.
|
|
Note, we need to create indexed datatype to send and receive these
|
|
blocks properly.
|
|
*/
|
|
tmprecv = (char*)rbuf + (ptrdiff_t)rdispls[neighbor[0]] * rext;
|
|
tmpsend = (char*)rbuf + (ptrdiff_t)rdispls[rank] * rext;
|
|
err = ompi_coll_tuned_sendrecv(tmpsend, rcounts[rank], rdtype,
|
|
neighbor[0], MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
tmprecv, rcounts[neighbor[0]], rdtype,
|
|
neighbor[0], MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
comm, MPI_STATUS_IGNORE, rank);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
/* Determine initial sending counts and displacements*/
|
|
if (even_rank) {
|
|
send_data_from = rank;
|
|
} else {
|
|
send_data_from = recv_data_from[0];
|
|
}
|
|
|
|
for (i = 1; i < (size / 2); i++) {
|
|
const int i_parity = i % 2;
|
|
recv_data_from[i_parity] =
|
|
(recv_data_from[i_parity] + offset_at_step[i_parity] + size) % size;
|
|
|
|
/* Create new indexed types for sending and receiving.
|
|
We are sending data from ranks (send_data_from) and (send_data_from+1)
|
|
We are receiving data from ranks (recv_data_from[i_parity]) and
|
|
(recv_data_from[i_parity]+1).
|
|
*/
|
|
new_scounts[0] = rcounts[send_data_from];
|
|
new_scounts[1] = rcounts[(send_data_from + 1)];
|
|
new_sdispls[0] = rdispls[send_data_from];
|
|
new_sdispls[1] = rdispls[(send_data_from + 1)];
|
|
err = ompi_datatype_create_indexed(2, new_scounts, new_sdispls, rdtype,
|
|
&new_sdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
err = ompi_datatype_commit(&new_sdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
new_rcounts[0] = rcounts[recv_data_from[i_parity]];
|
|
new_rcounts[1] = rcounts[(recv_data_from[i_parity] + 1)];
|
|
new_rdispls[0] = rdispls[recv_data_from[i_parity]];
|
|
new_rdispls[1] = rdispls[(recv_data_from[i_parity] + 1)];
|
|
err = ompi_datatype_create_indexed(2, new_rcounts, new_rdispls, rdtype,
|
|
&new_rdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
err = ompi_datatype_commit(&new_rdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
tmprecv = (char*)rbuf;
|
|
tmpsend = (char*)rbuf;
|
|
|
|
/* Sendreceive */
|
|
err = ompi_coll_tuned_sendrecv(tmpsend, 1, new_sdtype, neighbor[i_parity],
|
|
MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
tmprecv, 1, new_rdtype, neighbor[i_parity],
|
|
MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
comm, MPI_STATUS_IGNORE, rank);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
send_data_from = recv_data_from[i_parity];
|
|
|
|
ompi_datatype_destroy(&new_sdtype);
|
|
ompi_datatype_destroy(&new_rdtype);
|
|
}
|
|
|
|
return OMPI_SUCCESS;
|
|
|
|
err_hndl:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
|
|
__FILE__, line, err, rank));
|
|
return err;
|
|
}
|
|
|
|
|
|
int ompi_coll_tuned_allgatherv_intra_two_procs(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void* rbuf, int *rcounts,
|
|
int *rdispls,
|
|
struct ompi_datatype_t *rdtype,
|
|
struct ompi_communicator_t *comm,
|
|
mca_coll_base_module_t *module)
|
|
{
|
|
int line = -1, err = 0, rank, remote;
|
|
char *tmpsend = NULL, *tmprecv = NULL;
|
|
ptrdiff_t sext, rext, lb;
|
|
|
|
rank = ompi_comm_rank(comm);
|
|
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"ompi_coll_tuned_allgatherv_intra_two_procs rank %d", rank));
|
|
|
|
err = ompi_datatype_get_extent (sdtype, &lb, &sext);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
err = ompi_datatype_get_extent (rdtype, &lb, &rext);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
/* Exchange data:
|
|
- compute source and destinations
|
|
- send receive data
|
|
*/
|
|
remote = rank ^ 0x1;
|
|
|
|
tmpsend = (char*)sbuf;
|
|
if (MPI_IN_PLACE == sbuf) {
|
|
tmpsend = (char*)rbuf + (ptrdiff_t)rdispls[rank] * rext;
|
|
scount = rcounts[rank];
|
|
sdtype = rdtype;
|
|
}
|
|
tmprecv = (char*)rbuf + (ptrdiff_t)rdispls[remote] * rext;
|
|
|
|
err = ompi_coll_tuned_sendrecv(tmpsend, scount, sdtype, remote,
|
|
MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
tmprecv, rcounts[remote], rdtype, remote,
|
|
MCA_COLL_BASE_TAG_ALLGATHERV,
|
|
comm, MPI_STATUS_IGNORE, rank);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
|
|
/* Place your data in correct location if necessary */
|
|
if (MPI_IN_PLACE != sbuf) {
|
|
err = ompi_datatype_sndrcv((char*)sbuf, scount, sdtype,
|
|
(char*)rbuf + (ptrdiff_t)rdispls[rank] * rext,
|
|
rcounts[rank], rdtype);
|
|
if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
|
|
}
|
|
|
|
return MPI_SUCCESS;
|
|
|
|
err_hndl:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
|
|
__FILE__, line, err, rank));
|
|
return err;
|
|
}
|
|
|
|
|
|
/*
|
|
* Linear functions are copied from the BASIC coll module
|
|
* they do not segment the message and are simple implementations
|
|
* but for some small number of nodes and/or small data sizes they
|
|
* are just as fast as tuned/tree based segmenting operations
|
|
* and as such may be selected by the decision functions
|
|
* These are copied into this module due to the way we select modules
|
|
* in V1. i.e. in V2 we will handle this differently and so will not
|
|
* have to duplicate code.
|
|
* JPG following the examples from other coll_tuned implementations. Dec06.
|
|
*/
|
|
|
|
/* copied function (with appropriate renaming) starts here */
|
|
|
|
/*
|
|
* allgatherv_intra_basic
|
|
*
|
|
* Function: - allgatherv using other MPI collectives:
|
|
* gatherv + bcast (from basic module).
|
|
* Accepts: - same as MPI_Allgatherv()
|
|
* Returns: - MPI_SUCCESS or error code
|
|
*/
|
|
int
|
|
ompi_coll_tuned_allgatherv_intra_basic_default(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void *rbuf, int *rcounts,
|
|
int *disps,
|
|
struct ompi_datatype_t *rdtype,
|
|
struct ompi_communicator_t *comm,
|
|
mca_coll_base_module_t *module)
|
|
{
|
|
int i, size, rank, err;
|
|
MPI_Aint extent, lb;
|
|
char *send_buf = NULL;
|
|
struct ompi_datatype_t *newtype, *send_type;
|
|
|
|
size = ompi_comm_size(comm);
|
|
rank = ompi_comm_rank(comm);
|
|
/*
|
|
* We don't have a root process defined. Arbitrarily assign root
|
|
* to process with rank 0 (OMPI convention)
|
|
*/
|
|
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"ompi_coll_tuned_allgatherv_intra_basic_default rank %d",
|
|
rank));
|
|
|
|
if (MPI_IN_PLACE == sbuf) {
|
|
ompi_datatype_get_extent(rdtype, &lb, &extent);
|
|
send_type = rdtype;
|
|
send_buf = (char*)rbuf;
|
|
for (i = 0; i < rank; ++i) {
|
|
send_buf += ((ptrdiff_t)rcounts[i] * extent);
|
|
}
|
|
} else {
|
|
send_buf = (char*)sbuf;
|
|
send_type = sdtype;
|
|
}
|
|
|
|
err = comm->c_coll.coll_gatherv(send_buf,
|
|
rcounts[rank], send_type,rbuf,
|
|
rcounts, disps, rdtype, 0,
|
|
comm, comm->c_coll.coll_gatherv_module);
|
|
|
|
if (MPI_SUCCESS != err) {
|
|
return err;
|
|
}
|
|
/*
|
|
* we now have all the data in the root's rbuf. Need to
|
|
* broadcast the data out to the other processes
|
|
*
|
|
* Need to define a datatype that captures the different vectors
|
|
* from each process. MPI_TYPE_INDEXED with params
|
|
* size,rcount,displs,rdtype,newtype
|
|
* should do the trick.
|
|
* Use underlying ddt functions to create, and commit the
|
|
* new datatype on each process, then broadcast and destroy the
|
|
* datatype.
|
|
*/
|
|
|
|
err = ompi_datatype_create_indexed(size,rcounts,disps,rdtype,&newtype);
|
|
if (MPI_SUCCESS != err) {
|
|
return err;
|
|
}
|
|
|
|
err = ompi_datatype_commit(&newtype);
|
|
if(MPI_SUCCESS != err) {
|
|
return err;
|
|
}
|
|
|
|
comm->c_coll.coll_bcast(rbuf, 1, newtype, 0, comm,
|
|
comm->c_coll.coll_bcast_module);
|
|
|
|
ompi_datatype_destroy (&newtype);
|
|
|
|
return MPI_SUCCESS;
|
|
}
|
|
|
|
/* copied function (with appropriate renaming) ends here */
|
|
|
|
/* The following are used by dynamic and forced rules */
|
|
|
|
/* publish details of each algorithm and if its forced/fixed/locked in */
|
|
/* as you add methods/algorithms you must update this and the query/map
|
|
routines */
|
|
|
|
/* this routine is called by the component only */
|
|
/* this makes sure that the mca parameters are set to their initial values
|
|
and perms */
|
|
/* module does not call this they call the forced_getvalues routine instead */
|
|
|
|
int
|
|
ompi_coll_tuned_allgatherv_intra_check_forced_init(coll_tuned_force_algorithm_mca_param_indices_t *mca_param_indices)
|
|
{
|
|
mca_base_var_enum_t *new_enum;
|
|
|
|
ompi_coll_tuned_forced_max_algorithms[ALLGATHERV] = coll_tuned_allgatherv_algorithm_count;
|
|
|
|
(void) mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
|
|
"allgatherv_algorithm_count",
|
|
"Number of allgatherv algorithms available",
|
|
MCA_BASE_VAR_TYPE_INT, NULL, 0,
|
|
MCA_BASE_VAR_FLAG_DEFAULT_ONLY,
|
|
OPAL_INFO_LVL_5,
|
|
MCA_BASE_VAR_SCOPE_CONSTANT,
|
|
&coll_tuned_allgatherv_algorithm_count);
|
|
|
|
/* MPI_T: This variable should eventually be bound to a communicator */
|
|
coll_tuned_allgatherv_forced_algorithm = 0;
|
|
(void) mca_base_var_enum_create("coll_tuned_allgatherv_algorithms", allgatherv_algorithms, &new_enum);
|
|
mca_param_indices->algorithm_param_index =
|
|
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
|
|
"allgatherv_algorithm",
|
|
"Which allallgatherv algorithm is used. Can be locked down to choice of: 0 ignore, 1 default (allgathervv + bcast), 2 bruck, 3 ring, 4 neighbor exchange, 5: two proc only.",
|
|
MCA_BASE_VAR_TYPE_INT, new_enum, 0, 0,
|
|
OPAL_INFO_LVL_5,
|
|
MCA_BASE_VAR_SCOPE_READONLY,
|
|
&coll_tuned_allgatherv_forced_algorithm);
|
|
OBJ_RELEASE(new_enum);
|
|
if (mca_param_indices->algorithm_param_index < 0) {
|
|
return mca_param_indices->algorithm_param_index;
|
|
}
|
|
|
|
coll_tuned_allgatherv_segment_size = 0;
|
|
mca_param_indices->segsize_param_index =
|
|
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
|
|
"allgatherv_algorithm_segmentsize",
|
|
"Segment size in bytes used by default for allgatherv algorithms. Only has meaning if algorithm is forced and supports segmenting. 0 bytes means no segmentation. Currently, available algorithms do not support segmentation.",
|
|
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
|
OPAL_INFO_LVL_5,
|
|
MCA_BASE_VAR_SCOPE_READONLY,
|
|
&coll_tuned_allgatherv_segment_size);
|
|
|
|
coll_tuned_allgatherv_tree_fanout = ompi_coll_tuned_init_tree_fanout; /* get system wide default */
|
|
mca_param_indices->tree_fanout_param_index =
|
|
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
|
|
"allgatherv_algorithm_tree_fanout",
|
|
"Fanout for n-tree used for allgatherv algorithms. Only has meaning if algorithm is forced and supports n-tree topo based operation. Currently, available algorithms do not support n-tree topologies.",
|
|
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
|
OPAL_INFO_LVL_5,
|
|
MCA_BASE_VAR_SCOPE_READONLY,
|
|
&coll_tuned_allgatherv_tree_fanout);
|
|
|
|
coll_tuned_allgatherv_chain_fanout = ompi_coll_tuned_init_chain_fanout; /* get system wide default */
|
|
mca_param_indices->chain_fanout_param_index =
|
|
mca_base_component_var_register(&mca_coll_tuned_component.super.collm_version,
|
|
"allgatherv_algorithm_chain_fanout",
|
|
"Fanout for chains used for allgatherv algorithms. Only has meaning if algorithm is forced and supports chain topo based operation. Currently, available algorithms do not support chain topologies.",
|
|
MCA_BASE_VAR_TYPE_INT, NULL, 0, 0,
|
|
OPAL_INFO_LVL_5,
|
|
MCA_BASE_VAR_SCOPE_READONLY,
|
|
&coll_tuned_allgatherv_chain_fanout);
|
|
|
|
return (MPI_SUCCESS);
|
|
}
|
|
|
|
int ompi_coll_tuned_allgatherv_intra_do_forced(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void *rbuf, int *rcounts,
|
|
int *rdispls,
|
|
struct ompi_datatype_t *rdtype,
|
|
struct ompi_communicator_t *comm,
|
|
mca_coll_base_module_t *module)
|
|
{
|
|
mca_coll_tuned_module_t *tuned_module = (mca_coll_tuned_module_t*) module;
|
|
mca_coll_tuned_comm_t *data = tuned_module->tuned_data;
|
|
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:allgatherv_intra_do_forced selected algorithm %d",
|
|
data->user_forced[ALLGATHERV].algorithm));
|
|
|
|
switch (data->user_forced[ALLGATHERV].algorithm) {
|
|
case (0):
|
|
return ompi_coll_tuned_allgatherv_intra_dec_fixed (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (1):
|
|
return ompi_coll_tuned_allgatherv_intra_basic_default (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (2):
|
|
return ompi_coll_tuned_allgatherv_intra_bruck (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (3):
|
|
return ompi_coll_tuned_allgatherv_intra_ring (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (4):
|
|
return ompi_coll_tuned_allgatherv_intra_neighborexchange (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (5):
|
|
return ompi_coll_tuned_allgatherv_intra_two_procs (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
default:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:allgatherv_intra_do_forced attempt to select algorithm %d when only 0-%d is valid?",
|
|
data->user_forced[ALLGATHERV].algorithm,
|
|
ompi_coll_tuned_forced_max_algorithms[ALLGATHERV]));
|
|
return (MPI_ERR_ARG);
|
|
} /* switch */
|
|
|
|
}
|
|
|
|
|
|
int ompi_coll_tuned_allgatherv_intra_do_this(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void *rbuf, int *rcounts,
|
|
int *rdispls,
|
|
struct ompi_datatype_t *rdtype,
|
|
struct ompi_communicator_t *comm,
|
|
mca_coll_base_module_t *module,
|
|
int algorithm, int faninout,
|
|
int segsize)
|
|
{
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:allgatherv_intra_do_this selected algorithm %d topo faninout %d segsize %d",
|
|
algorithm, faninout, segsize));
|
|
|
|
switch (algorithm) {
|
|
case (0):
|
|
return ompi_coll_tuned_allgatherv_intra_dec_fixed(sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (1):
|
|
return ompi_coll_tuned_allgatherv_intra_basic_default(sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (2):
|
|
return ompi_coll_tuned_allgatherv_intra_bruck(sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (3):
|
|
return ompi_coll_tuned_allgatherv_intra_ring(sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (4):
|
|
return ompi_coll_tuned_allgatherv_intra_neighborexchange(sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
case (5):
|
|
return ompi_coll_tuned_allgatherv_intra_two_procs (sbuf, scount, sdtype,
|
|
rbuf, rcounts, rdispls, rdtype,
|
|
comm, module);
|
|
default:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:allgatherv_intra_do_this attempt to select algorithm %d when only 0-%d is valid?",
|
|
algorithm,
|
|
ompi_coll_tuned_forced_max_algorithms[ALLGATHERV]));
|
|
return (MPI_ERR_ARG);
|
|
} /* switch */
|
|
}
|