6b22641669
I know it does not make much sense but one can play around with the performance. Numbers are available at http://www.unixer.de/research/nbcoll/perf/. This is the first step towards collv2. Next step includes the addition of non-blocking functions to the MPI-Layer and the collv1 interface. It implements all MPI-1 collective algorithms in a non-blocking manner. However, the collv1 interface does not allow non-blocking collectives so that all collectives are used blocking by the ompi-glue layer. I wanted to add LibNBC as a separate subdirectory, but I could not convince the buildsystem (and had not the time). So the component looks pretty messy. It would be great if somebody could explain me how to move all nbc*{c,h}, and {hb,dict}*{c,h} to a seperate subdirectory. It's .ompi_ignored because I did not test it exhaustively yet. This commit was SVN r11401.
133 строки
5.5 KiB
C
133 строки
5.5 KiB
C
#include "nbc.h"
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/* an reduce_csttare schedule can not be cached easily because the contents
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* ot the recvcounts array may change, so a comparison of the address
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* would not be sufficient ... we simply do not cache it */
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/* binomial reduce to rank 0 followed by a linear scatter ...
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*
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* Algorithm:
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* pairwise exchange
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* round r:
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* grp = rank % 2^r
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* if grp == 0: receive from rank + 2^(r-1) if it exists and reduce value
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* if grp == 1: send to rank - 2^(r-1) and exit function
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*
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* do this for R=log_2(p) rounds
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*
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*/
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int NBC_Ireduce_scatter(void* sendbuf, void* recvbuf, int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, NBC_Handle* handle) {
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int peer, rank, maxr, p, r, res, count, offset, firstred;
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MPI_Aint ext;
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char *redbuf, *sbuf, inplace;
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NBC_Schedule *schedule;
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NBC_IN_PLACE(sendbuf, recvbuf, inplace);
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res = NBC_Init_handle(handle, comm);
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if(res != NBC_OK) { printf("Error in NBC_Init_handle(%i)\n", res); return res; }
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res = MPI_Comm_rank(comm, &rank);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_rank() (%i)\n", res); return res; }
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res = MPI_Comm_size(comm, &p);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Comm_size() (%i)\n", res); return res; }
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MPI_Type_extent(datatype, &ext);
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if (MPI_SUCCESS != res) { printf("MPI Error in MPI_Type_extent() (%i)\n", res); return res; }
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schedule = malloc(sizeof(NBC_Schedule));
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if (NULL == schedule) { printf("Error in malloc()\n"); return NBC_OOR; }
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res = NBC_Sched_create(schedule);
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if(res != NBC_OK) { printf("Error in NBC_Sched_create (%i)\n", res); return res; }
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maxr = (int)ceil((log(p)/LOG2));
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count = 0;
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for(r=0;r<p;r++) count += recvcounts[r];
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handle->tmpbuf = malloc(ext*count*2);
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if(handle->tmpbuf == NULL) { printf("Error in malloc()\n"); return NBC_OOR; }
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redbuf = ((char*)handle->tmpbuf)+(ext*count);
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/* copy data to redbuf if we only have a single node */
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if((p==1) && !inplace) {
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res = NBC_Copy(sendbuf, count, datatype, redbuf, count, datatype, comm);
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if (NBC_OK != res) { printf("Error in NBC_Copy() (%i)\n", res); return res; }
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}
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firstred = 1;
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for(r=1; r<=maxr; r++) {
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if((rank % (1<<r)) == 0) {
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/* we have to receive this round */
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peer = rank + (1<<(r-1));
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if(peer<p) {
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res = NBC_Sched_recv(0, true, count, datatype, peer, schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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/* we have to wait until we have the data */
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res = NBC_Sched_barrier(schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
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if(firstred) {
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/* take reduce data from the sendbuf in the first round -> save copy */
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res = NBC_Sched_op(redbuf-(unsigned long)handle->tmpbuf, true, sendbuf, false, 0, true, count, datatype, op, schedule);
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firstred = 0;
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} else {
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/* perform the reduce in my local buffer */
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res = NBC_Sched_op(redbuf-(unsigned long)handle->tmpbuf, true, redbuf-(unsigned long)handle->tmpbuf, true, 0, true, count, datatype, op, schedule);
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}
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_op() (%i)\n", res); return res; }
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/* this cannot be done until handle->tmpbuf is unused :-( */
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res = NBC_Sched_barrier(schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
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}
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} else {
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/* we have to send this round */
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peer = rank - (1<<(r-1));
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if(firstred) {
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/* we have to send the senbuf */
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res = NBC_Sched_send(sendbuf, false, count, datatype, peer, schedule);
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} else {
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/* we send an already reduced value from redbuf */
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res = NBC_Sched_send(redbuf-(unsigned long)handle->tmpbuf, true, count, datatype, peer, schedule);
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}
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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/* leave the game */
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break;
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}
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}
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res = NBC_Sched_barrier(schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_barrier() (%i)\n", res); return res; }
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/* rank 0 is root and sends - all others receive */
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if(rank != 0) {
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res = NBC_Sched_recv(recvbuf, false, recvcounts[rank], datatype, 0, schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_recv() (%i)\n", res); return res; }
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}
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if(rank == 0) {
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offset = 0;
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for(r=1;r<p;r++) {
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offset += recvcounts[r-1];
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sbuf = ((char *)redbuf) + (offset*ext);
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/* root sends the right buffer to the right receiver */
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res = NBC_Sched_send(sbuf-(unsigned long)handle->tmpbuf, true, recvcounts[r], datatype, r, schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_send() (%i)\n", res); return res; }
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}
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res = NBC_Sched_copy(redbuf-(unsigned long)handle->tmpbuf, true, recvcounts[0], datatype, recvbuf, false, recvcounts[0], datatype, schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_copy() (%i)\n", res); return res; }
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}
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/*NBC_PRINT_SCHED(*schedule);*/
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res = NBC_Sched_commit(schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Sched_commit() (%i)\n", res); return res; }
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res = NBC_Start(handle, schedule);
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if (NBC_OK != res) { free(handle->tmpbuf); printf("Error in NBC_Start() (%i)\n", res); return res; }
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/* tmpbuf is freed with the handle */
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return NBC_OK;
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}
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