3740640711
- adding linear algorithm with synchronization for gather. This algorithm prevents congestion at root process, but introduces synchronization (serializes non-root processes, but allows messages to arrive from two processes at the same time). It performed better than binomial and linear algorithms for large message, and intermediate and large communicator sizes. - Updating MPI_Gather decision function to reflect performance results from MX. I will perform more measurements though - so this one can change. This commit was SVN r15165.
564 строки
20 KiB
C
564 строки
20 KiB
C
/*
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* Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana
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* University Research and Technology
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* Corporation. All rights reserved.
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* Copyright (c) 2004-2006 The University of Tennessee and The University
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* of Tennessee Research Foundation. All rights
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* reserved.
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* Copyright (c) 2004-2005 High Performance Computing Center Stuttgart,
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* University of Stuttgart. All rights reserved.
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* Copyright (c) 2004-2005 The Regents of the University of California.
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* All rights reserved.
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* $COPYRIGHT$
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*
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* Additional copyrights may follow
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*
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* $HEADER$
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*/
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#include "ompi_config.h"
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#include "mpi.h"
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#include "ompi/constants.h"
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#include "ompi/datatype/datatype.h"
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#include "ompi/communicator/communicator.h"
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#include "ompi/mca/coll/coll.h"
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#include "ompi/mca/coll/base/coll_tags.h"
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#include "ompi/mca/pml/pml.h"
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#include "ompi/op/op.h"
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#include "coll_tuned.h"
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#include "coll_tuned_topo.h"
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#include "coll_tuned_util.h"
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/* Todo: gather_intra_generic, gather_intra_binary, gather_intra_chain,
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* gather_intra_pipeline, segmentation? */
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int
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ompi_coll_tuned_gather_intra_binomial(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void *rbuf, int rcount,
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struct ompi_datatype_t *rdtype,
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int root, struct ompi_communicator_t *comm)
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{
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int line = -1;
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int i;
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int rank;
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int vrank;
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int size;
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int total_recv = 0;
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char *ptmp = NULL;
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char *tempbuf = NULL;
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int err;
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ompi_coll_tree_t* bmtree;
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MPI_Status status;
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MPI_Aint sextent, slb, strue_lb, strue_extent;
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MPI_Aint rextent, rlb, rtrue_lb, rtrue_extent;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"ompi_coll_tuned_gather_intra_binomial rank %d", rank));
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/* create the binomial tree */
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COLL_TUNED_UPDATE_IN_ORDER_BMTREE( comm, root );
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bmtree = comm->c_coll_selected_data->cached_in_order_bmtree;
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ompi_ddt_get_extent(sdtype, &slb, &sextent);
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ompi_ddt_get_true_extent(sdtype, &strue_lb, &strue_extent);
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ompi_ddt_get_extent(rdtype, &rlb, &rextent);
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ompi_ddt_get_true_extent(rdtype, &rtrue_lb, &rtrue_extent);
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vrank = (rank - root + size) % size;
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if (rank == root) {
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if (0 == root){
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/* root on 0, just use the recv buffer */
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ptmp = rbuf;
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if (sbuf != MPI_IN_PLACE) {
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err = ompi_ddt_sndrcv(sbuf, scount, sdtype,
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ptmp, rcount, rdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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} else {
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/* root is not on 0, allocate temp buffer for recv,
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* rotate data at the end */
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tempbuf = malloc(rtrue_extent + (rcount*size - 1) * rextent);
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if (NULL == tempbuf) {
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err= OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
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}
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ptmp = tempbuf - rlb;
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if (sbuf != MPI_IN_PLACE) {
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/* copy from sbuf to temp buffer */
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err = ompi_ddt_sndrcv(sbuf, scount, sdtype,
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ptmp, rcount, rdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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} else {
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/* copy from rbuf to temp buffer */
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err = ompi_ddt_copy_content_same_ddt(rdtype, rcount, ptmp,
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(char *) rbuf + rank*rextent*rcount);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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}
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total_recv = rcount;
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} else if (!(vrank % 2)) {
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/* other non-leaf nodes, allocate temp buffer for data received from
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* children, the most we need is half of the total data elements due
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* to the property of binimoal tree */
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tempbuf = malloc(strue_extent + (scount*size - 1) * sextent);
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if (NULL == tempbuf) {
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err= OMPI_ERR_OUT_OF_RESOURCE; line = __LINE__; goto err_hndl;
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}
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ptmp = tempbuf - slb;
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/* local copy to tempbuf */
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err = ompi_ddt_sndrcv(sbuf, scount, sdtype,
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ptmp, scount, sdtype);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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/* use sdtype,scount as rdtype,rdcount since they are ignored on
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* non-root procs */
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rdtype = sdtype;
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rcount = scount;
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rextent = sextent;
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total_recv = rcount;
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} else {
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/* leaf nodes, no temp buffer needed, use sdtype,scount as
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* rdtype,rdcount since they are ignored on non-root procs */
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ptmp = sbuf;
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total_recv = scount;
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}
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if (!(vrank % 2)) {
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/* all non-leaf nodes recv from children */
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for (i = 0; i < bmtree->tree_nextsize; i++) {
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int mycount = 0, vkid;
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/* figure out how much data I have to send to this child */
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vkid = (bmtree->tree_next[i] - root + size) % size;
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mycount = vkid - vrank;
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if (mycount > (size - vkid))
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mycount = size - vkid;
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mycount *= rcount;
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"ompi_coll_tuned_gather_intra_binomial rank %d recv %d mycount = %d",
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rank, bmtree->tree_next[i], mycount));
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err = MCA_PML_CALL(recv(ptmp + total_recv*rextent, rcount*size-total_recv, rdtype,
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bmtree->tree_next[i], MCA_COLL_BASE_TAG_GATHER,
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comm, &status));
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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total_recv += mycount;
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}
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}
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if (rank != root) {
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/* all nodes except root send to parents */
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"ompi_coll_tuned_gather_intra_binomial rank %d send %d count %d\n",
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rank, bmtree->tree_prev, total_recv));
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err = MCA_PML_CALL(send(ptmp, total_recv, sdtype,
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bmtree->tree_prev,
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MCA_COLL_BASE_TAG_GATHER,
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MCA_PML_BASE_SEND_STANDARD, comm));
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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}
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if (rank == root) {
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if (root != 0) {
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/* rotate received data on root if root != 0 */
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err = ompi_ddt_copy_content_same_ddt(rdtype, rcount*(size - root),
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(char *) rbuf + rextent*root*rcount, ptmp);
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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err = ompi_ddt_copy_content_same_ddt(rdtype, rcount*root,
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rbuf, ptmp + rextent*rcount*(size-root));
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if (MPI_SUCCESS != err) { line = __LINE__; goto err_hndl; }
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free(tempbuf);
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}
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} else if (!(vrank % 2)) {
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/* other non-leaf nodes */
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free(tempbuf);
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}
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return MPI_SUCCESS;
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err_hndl:
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if (NULL != tempbuf)
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free(tempbuf);
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OPAL_OUTPUT((ompi_coll_tuned_stream, "%s:%4d\tError occurred %d, rank %2d",
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__FILE__, line, err, rank));
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return err;
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}
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/*
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* gather_intra_linear_sync
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*
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* Function: - synchronized gather operation with
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* Accepts: - same arguments as MPI_Gather(), first segment size
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* Returns: - MPI_SUCCESS or error code
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*/
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int
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ompi_coll_tuned_gather_intra_linear_sync(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void *rbuf, int rcount,
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struct ompi_datatype_t *rdtype,
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int root,
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struct ompi_communicator_t *comm,
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int first_segment_size)
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{
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int i;
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int ret, line;
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int rank, size;
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int first_segment_count;
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size_t typelng;
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MPI_Aint incr;
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MPI_Aint extent;
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MPI_Aint lb;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"ompi_coll_tuned_gather_intra_linear_sync rank %d, segment %d", rank, first_segment_size));
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if (rank != root) {
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/* Non-root processes:
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- receive zero byte message from the root,
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- send the first segment of the data synchronously,
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- send the second segment of the data.
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*/
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ompi_ddt_type_size(sdtype, &typelng);
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ompi_ddt_get_extent(sdtype, &lb, &extent);
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first_segment_count = scount;
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COLL_TUNED_COMPUTED_SEGCOUNT( (size_t) first_segment_size, typelng,
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first_segment_count );
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ret = MCA_PML_CALL(recv(sbuf, 0, MPI_BYTE, root,
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MCA_COLL_BASE_TAG_GATHER,
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comm, MPI_STATUS_IGNORE));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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ret = MCA_PML_CALL(send(sbuf, first_segment_count, sdtype, root,
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MCA_COLL_BASE_TAG_GATHER,
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MCA_PML_BASE_SEND_STANDARD, comm));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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ret = MCA_PML_CALL(send((char*)sbuf + extent * first_segment_count,
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(scount - first_segment_count), sdtype,
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root, MCA_COLL_BASE_TAG_GATHER,
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MCA_PML_BASE_SEND_STANDARD, comm));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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}
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else {
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/* Root process,
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- For every non-root node:
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- post irecv for the first segment of the message
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- send zero byte message to signal node to send the message
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- post irecv for the second segment of the message
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- wait for the first segment to complete
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- Copy local data if necessary
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- Waitall for all the second segments to complete.
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*/
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char *ptmp;
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ompi_request_t **reqs = NULL, *first_segment_req;
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reqs = (ompi_request_t**) calloc(size, sizeof(ompi_request_t*));
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if (NULL == reqs) { ret = -1; line = __LINE__; goto error_hndl; }
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ompi_ddt_type_size(rdtype, &typelng);
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ompi_ddt_get_extent(rdtype, &lb, &extent);
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first_segment_count = rcount;
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COLL_TUNED_COMPUTED_SEGCOUNT( (size_t)first_segment_size, typelng,
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first_segment_count );
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ptmp = (char *) rbuf;
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for (i = 0; i < size; ++i, ptmp += incr) {
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if (i == rank) {
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/* skip myself */
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reqs[i] = MPI_REQUEST_NULL;
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continue;
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}
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/* irecv for the first segment from i */
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ptmp = (char*)rbuf + i * rcount * extent;
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ret = MCA_PML_CALL(irecv(ptmp, first_segment_count, rdtype, i,
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MCA_COLL_BASE_TAG_GATHER, comm,
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&first_segment_req));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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/* send sync message */
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ret = MCA_PML_CALL(send(rbuf, 0, MPI_BYTE, i,
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MCA_COLL_BASE_TAG_GATHER,
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MCA_PML_BASE_SEND_STANDARD, comm));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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/* irecv for the second segment */
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ptmp = (char*)rbuf + (i * rcount + first_segment_count) * extent;
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ret = MCA_PML_CALL(irecv(ptmp, (rcount - first_segment_count),
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rdtype, i, MCA_COLL_BASE_TAG_GATHER, comm,
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&reqs[i]));
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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/* wait on the first segment to complete */
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ret = ompi_request_wait(&first_segment_req, MPI_STATUS_IGNORE);
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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}
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/* copy local data if necessary */
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if (MPI_IN_PLACE != sbuf) {
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ret = ompi_ddt_sndrcv(sbuf, scount, sdtype,
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(char*)rbuf + rank * rcount * extent,
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rcount, rdtype);
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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}
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/* wait all second segments to complete */
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ret = ompi_request_wait_all(size, reqs, MPI_STATUSES_IGNORE);
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if (ret != MPI_SUCCESS) { line = __LINE__; goto error_hndl; }
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free(reqs);
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}
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/* All done */
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return MPI_SUCCESS;
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error_hndl:
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OPAL_OUTPUT (( ompi_coll_tuned_stream,
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"ERROR_HNDL: node %d file %s line %d error %d\n",
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rank, __FILE__, line, ret ));
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return ret;
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}
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/*
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* Linear functions are copied from the BASIC coll module
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* they do not segment the message and are simple implementations
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* but for some small number of nodes and/or small data sizes they
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* are just as fast as tuned/tree based segmenting operations
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* and as such may be selected by the decision functions
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* These are copied into this module due to the way we select modules
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* in V1. i.e. in V2 we will handle this differently and so will not
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* have to duplicate code.
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* JPG following the examples from other coll_tuned implementations. Dec06.
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*/
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/* copied function (with appropriate renaming) starts here */
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/*
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* gather_intra
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*
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* Function: - basic gather operation
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* Accepts: - same arguments as MPI_Gather()
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* Returns: - MPI_SUCCESS or error code
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*/
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int
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ompi_coll_tuned_gather_intra_basic_linear(void *sbuf, int scount,
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struct ompi_datatype_t *sdtype,
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void *rbuf, int rcount,
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struct ompi_datatype_t *rdtype,
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int root, struct ompi_communicator_t *comm)
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{
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int i;
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int err;
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int rank;
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int size;
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char *ptmp;
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MPI_Aint incr;
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MPI_Aint extent;
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MPI_Aint lb;
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size = ompi_comm_size(comm);
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rank = ompi_comm_rank(comm);
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/* Everyone but root sends data and returns. */
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OPAL_OUTPUT((ompi_coll_tuned_stream,
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"ompi_coll_tuned_gather_intra_basic_linear rank %d", rank));
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if (rank != root) {
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return MCA_PML_CALL(send(sbuf, scount, sdtype, root,
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MCA_COLL_BASE_TAG_GATHER,
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MCA_PML_BASE_SEND_STANDARD, comm));
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}
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/* I am the root, loop receiving the data. */
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ompi_ddt_get_extent(rdtype, &lb, &extent);
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incr = extent * rcount;
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for (i = 0, ptmp = (char *) rbuf; i < size; ++i, ptmp += incr) {
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if (i == rank) {
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if (MPI_IN_PLACE != sbuf) {
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err = ompi_ddt_sndrcv(sbuf, scount, sdtype,
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ptmp, rcount, rdtype);
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} else {
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err = MPI_SUCCESS;
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}
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} else {
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err = MCA_PML_CALL(recv(ptmp, rcount, rdtype, i,
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MCA_COLL_BASE_TAG_GATHER,
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comm, MPI_STATUS_IGNORE));
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}
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if (MPI_SUCCESS != err) {
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return err;
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}
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}
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/* All done */
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return MPI_SUCCESS;
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}
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/* copied function (with appropriate renaming) ends here */
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/* The following are used by dynamic and forced rules */
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/* publish details of each algorithm and if its forced/fixed/locked in */
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/* as you add methods/algorithms you must update this and the query/map
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routines */
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/* this routine is called by the component only */
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/* this makes sure that the mca parameters are set to their initial values
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and perms */
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/* module does not call this they call the forced_getvalues routine instead */
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int
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ompi_coll_tuned_gather_intra_check_forced_init(coll_tuned_force_algorithm_mca_param_indices_t *mca_param_indices)
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{
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int rc, max_alg = 3, requested_alg;
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ompi_coll_tuned_forced_max_algorithms[GATHER] = max_alg;
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rc = mca_base_param_reg_int (&mca_coll_tuned_component.super.collm_version,
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"gather_algorithm_count",
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"Number of gather algorithms available",
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false, true, max_alg, NULL);
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mca_param_indices->algorithm_param_index
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= mca_base_param_reg_int(&mca_coll_tuned_component.super.collm_version,
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"gather_algorithm",
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"Which gather algorithm is used. Can be locked down to choice of: 0 ignore, 1 basic linear, 2 binomial, 3 linear with synchronization.",
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false, false, 0, NULL);
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mca_base_param_lookup_int(mca_param_indices->algorithm_param_index,
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&(requested_alg));
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if( requested_alg > max_alg ) {
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if( 0 == ompi_comm_rank( MPI_COMM_WORLD ) ) {
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opal_output( 0, "Gather algorithm #%d is not available (range [0..%d]). Switching back to ignore(0)\n",
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requested_alg, max_alg );
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}
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mca_base_param_set_int( mca_param_indices->algorithm_param_index, 0);
|
|
}
|
|
|
|
mca_param_indices->segsize_param_index
|
|
= mca_base_param_reg_int(&mca_coll_tuned_component.super.collm_version,
|
|
"gather_algorithm_segmentsize",
|
|
"Segment size in bytes used by default for gather algorithms. Only has meaning if algorithm is forced and supports segmenting. 0 bytes means no segmentation. Currently, available algorithms do not support segmentation.",
|
|
false, false, 0, NULL);
|
|
|
|
mca_param_indices->tree_fanout_param_index
|
|
= mca_base_param_reg_int(&mca_coll_tuned_component.super.collm_version,
|
|
"gather_algorithm_tree_fanout",
|
|
"Fanout for n-tree used for gather algorithms. Only has meaning if algorithm is forced and supports n-tree topo based operation. Currently, available algorithms do not support n-tree topologies.",
|
|
false, false,
|
|
ompi_coll_tuned_init_tree_fanout, /* get system wide default */
|
|
NULL);
|
|
|
|
mca_param_indices->chain_fanout_param_index
|
|
= mca_base_param_reg_int(&mca_coll_tuned_component.super.collm_version,
|
|
"gather_algorithm_chain_fanout",
|
|
"Fanout for chains used for gather algorithms. Only has meaning if algorithm is forced and supports chain topo based operation. Currently, available algorithms do not support chain topologies.",
|
|
false, false,
|
|
ompi_coll_tuned_init_chain_fanout, /* get system wide default */
|
|
NULL);
|
|
|
|
return (MPI_SUCCESS);
|
|
}
|
|
|
|
int
|
|
ompi_coll_tuned_gather_intra_do_forced(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void* rbuf, int rcount,
|
|
struct ompi_datatype_t *rdtype,
|
|
int root, struct ompi_communicator_t *comm)
|
|
{
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:gather_intra_do_forced selected algorithm %d",
|
|
comm->c_coll_selected_data->user_forced[GATHER].algorithm));
|
|
|
|
switch (comm->c_coll_selected_data->user_forced[GATHER].algorithm) {
|
|
case (0):
|
|
return ompi_coll_tuned_gather_intra_dec_fixed (sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (1):
|
|
return ompi_coll_tuned_gather_intra_basic_linear (sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (2):
|
|
return ompi_coll_tuned_gather_intra_binomial(sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (3):
|
|
{
|
|
const int first_segment_size =
|
|
comm->c_coll_selected_data->user_forced[GATHER].segsize;
|
|
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount,
|
|
sdtype,
|
|
rbuf, rcount,
|
|
rdtype,
|
|
root, comm,
|
|
first_segment_size);
|
|
}
|
|
default:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:gather_intra_do_forced attempt to select algorithm %d when only 0-%d is valid?",
|
|
comm->c_coll_selected_data->user_forced[GATHER].algorithm,
|
|
ompi_coll_tuned_forced_max_algorithms[GATHER]));
|
|
return (MPI_ERR_ARG);
|
|
} /* switch */
|
|
}
|
|
|
|
int
|
|
ompi_coll_tuned_gather_intra_do_this(void *sbuf, int scount,
|
|
struct ompi_datatype_t *sdtype,
|
|
void* rbuf, int rcount,
|
|
struct ompi_datatype_t *rdtype,
|
|
int root, struct ompi_communicator_t *comm,
|
|
int algorithm, int faninout, int segsize)
|
|
{
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:gather_intra_do_this selected algorithm %d topo faninout %d segsize %d",
|
|
algorithm, faninout, segsize));
|
|
|
|
switch (algorithm) {
|
|
case (0):
|
|
return ompi_coll_tuned_gather_intra_dec_fixed (sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (1):
|
|
return ompi_coll_tuned_gather_intra_basic_linear (sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (2):
|
|
return ompi_coll_tuned_gather_intra_binomial(sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm);
|
|
case (3):
|
|
return ompi_coll_tuned_gather_intra_linear_sync (sbuf, scount, sdtype,
|
|
rbuf, rcount, rdtype,
|
|
root, comm, segsize);
|
|
|
|
default:
|
|
OPAL_OUTPUT((ompi_coll_tuned_stream,
|
|
"coll:tuned:gather_intra_do_this attempt to select algorithm %d when only 0-%d is valid?",
|
|
algorithm,
|
|
ompi_coll_tuned_forced_max_algorithms[GATHER]));
|
|
return (MPI_ERR_ARG);
|
|
} /* switch */
|
|
}
|