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openmpi/ompi/mca/bcol/basesmuma/bcol_basesmuma_smcm.c
Nathan Hjelm 2614dfc4bf bcol/basesmuma: fix remaining memory leaks in basesmuma
We were still leaking 1) file descriptors for data files, and 2) some
control files. I fixed both of these leaks and everything is looking
good. This should fix the bug where we are running out of file
descriptors when running the loop_spawn test. I also too the
opportunity to refactor the code a bit to make the mapping/unmapping
simpler. This should help avoid these sorts of issues in the future.

Depends on #4678

cmr=v1.8.2:reviewer=manjugv

This commit was SVN r31893.
2014-05-27 18:40:41 +00:00

455 строки
16 KiB
C

/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */
/*
*
* Copyright (c) 2009-2012 Oak Ridge National Laboratory. All rights reserved.
* Copyright (c) 2009-2012 Mellanox Technologies. All rights reserved.
* Copyright (c) 2012-2014 Los Alamos National Security, LLC. All rights
* reserved.
* Copyright (c) 2014 Intel, Inc. All rights reserved.
* Copyright (c) 2014 Research Organization for Information Science
* and Technology (RIST). All rights reserved.
* $COPYRIGHT$
*
* Additional copyrights may follow
*
* $HEADER$
*/
#include "ompi_config.h"
#include <stdlib.h>
#include <stdio.h>
#include <fcntl.h>
#include <errno.h>
#ifdef HAVE_STRINGS_H
#include <strings.h>
#endif
#include "ompi/proc/proc.h"
#include "ompi/patterns/comm/coll_ops.h"
#include "opal/align.h"
#include "opal/dss/dss.h"
#include "opal/util/error.h"
#include "opal/util/output.h"
#include "opal/class/opal_list.h"
#include "opal/class/opal_hash_table.h"
#include "bcol_basesmuma.h"
#define SM_BACKING_FILE_NAME_MAX_LEN 256
static bcol_basesmuma_smcm_mmap_t * bcol_basesmuma_smcm_reg_mmap(void *in_ptr, int fd, size_t length,
size_t addr_offset, size_t alignment,
char *file_name);
struct file_info_t {
uint32_t vpid;
uint32_t jobid;
uint64_t file_size;
uint64_t size_ctl_structure;
uint64_t data_seg_alignment;
char file_name[SM_BACKING_FILE_NAME_MAX_LEN];
};
/* need to allocate space for the peer */
static void bcol_basesmuma_smcm_proc_item_t_construct (bcol_basesmuma_smcm_proc_item_t * item)
{
memset ((char *) item + sizeof (item->item), 0, sizeof (*item) - sizeof (item->item));
}
/* need to free the space for the peer */
static void bcol_basesmuma_smcm_proc_item_t_destruct (bcol_basesmuma_smcm_proc_item_t * item)
{
if (item->sm_mmap) {
OBJ_RELEASE(item->sm_mmap);
}
if (item->sm_file.file_name) {
free (item->sm_file.file_name);
item->sm_file.file_name = NULL;
}
}
OBJ_CLASS_INSTANCE(bcol_basesmuma_smcm_proc_item_t,
opal_list_item_t,
bcol_basesmuma_smcm_proc_item_t_construct,
bcol_basesmuma_smcm_proc_item_t_destruct);
static void bcol_basesmuma_smcm_mmap_construct (bcol_basesmuma_smcm_mmap_t *smcm_mmap)
{
memset ((char *) smcm_mmap + sizeof (smcm_mmap->super), 0, sizeof (*smcm_mmap) - sizeof (smcm_mmap->super));
}
static void bcol_basesmuma_smcm_mmap_destruct (bcol_basesmuma_smcm_mmap_t *smcm_mmap)
{
if (smcm_mmap->map_seg) {
munmap (smcm_mmap->map_seg, smcm_mmap->map_size);
smcm_mmap->map_seg = NULL;
}
if (smcm_mmap->map_path) {
free (smcm_mmap->map_path);
smcm_mmap->map_path = NULL;
}
}
OBJ_CLASS_INSTANCE(bcol_basesmuma_smcm_mmap_t, opal_list_item_t,
bcol_basesmuma_smcm_mmap_construct,
bcol_basesmuma_smcm_mmap_destruct);
/* smcm_allgather_connection:
This function is called when a shared memory subgroup wants to establish shared memory "connections" among
a group of processes.
This function DOES NOT create any shared memory backing files, it only mmaps already existing files. Shared
memory files are created by the shared memory registration function
-----------------------------------------------------------------------------------------------------------
Input params:
- sbgp module The subgrouping module contains the list of ranks to wire up.
- peer_list An opal list containing a list of bcol_basesmuma_smcm_proc_item_t types. This
contains a list of peers whose shared memory files I have already mapped.
Upon completion of the allgather exchange with all members of the group and depending on the
value of "map_all", my peers' shared memory files are mapped into my local virtual memory
space, with all pertinent information being stored in an bcol_basesmuma_smcm_proc_item_t which is
subsequently appended onto the "peer_list".
- comm The ompi_communicator_t communicator.
- input A data struct that caches the information about my shared memory file.
- map_all Bool that determines whether or not to go ahead and map the files from all of the peers
defined in the sbgp-ing module. If map_all == true, then go ahead and mmap all of the files
obtained in the exchange and append the information to the "peer_list". If map_all == false
then make a check and only mmap those peers' files whose vpid/jobid/filename combination do
not already exist in the "peer_list". Once mapping is completed, append this peer's information
to the "peer_list".
-----------------------------------------------------------------------------------------------------------
*
*/
int bcol_basesmuma_smcm_allgather_connection(
mca_bcol_basesmuma_module_t *sm_bcol_module,
mca_sbgp_base_module_t *module,
opal_list_t *peer_list,
bcol_basesmuma_smcm_proc_item_t ***back_files,
ompi_communicator_t *comm,
bcol_basesmuma_smcm_file_t input,
char *base_fname,
bool map_all)
{
/* define local variables */
int rc, i, fd;
ptrdiff_t mem_offset;
ompi_proc_t *proc_temp, *my_id;
bcol_basesmuma_smcm_proc_item_t *temp;
bcol_basesmuma_smcm_proc_item_t *item_ptr;
bcol_basesmuma_smcm_proc_item_t **backing_files;
struct file_info_t local_file;
struct file_info_t *all_files=NULL;
/* sanity check */
if (strlen(input.file_name) > SM_BACKING_FILE_NAME_MAX_LEN-1) {
opal_output (ompi_bcol_base_framework.framework_output, "backing file name too long: %s len :: %d",
input.file_name, (int) strlen(input.file_name));
return OMPI_ERR_BAD_PARAM;
}
backing_files = (bcol_basesmuma_smcm_proc_item_t **)
calloc(module->group_size, sizeof(bcol_basesmuma_smcm_proc_item_t *));
if (!backing_files) {
return OMPI_ERR_OUT_OF_RESOURCE;
}
/* FIXME *back_files might have been already allocated
* so free it in order to avoid a memory leak */
if (NULL != *back_files) {
free (*back_files);
}
*back_files = backing_files;
my_id = ompi_proc_local();
/* Phase One:
gather a list of processes that will participate in the allgather - I'm
preparing this list from the sbgp-ing module that was passed into the function */
/* fill in local file information */
local_file.vpid=my_id->proc_name.vpid;
local_file.jobid=my_id->proc_name.jobid;
local_file.file_size=input.size;
local_file.size_ctl_structure=input.size_ctl_structure;
local_file.data_seg_alignment=input.data_seg_alignment;
strcpy (local_file.file_name, input.file_name);
/* will exchange this data type as a string of characters -
* this routine is first called before MPI_init() completes
* and before error handling is setup, so can't use the
* MPI data types to send this data */
all_files = (struct file_info_t *) calloc(module->group_size,
sizeof (struct file_info_t));
if (!all_files) {
return OMPI_ERR_OUT_OF_RESOURCE;
}
/* exchange data */
rc = comm_allgather_pml(&local_file,all_files,sizeof(struct file_info_t), MPI_CHAR,
sm_bcol_module->super.sbgp_partner_module->my_index,
sm_bcol_module->super.sbgp_partner_module->group_size,
sm_bcol_module->super.sbgp_partner_module->group_list,
sm_bcol_module->super.sbgp_partner_module->group_comm);
if( OMPI_SUCCESS != rc ) {
opal_output (ompi_bcol_base_framework.framework_output, "failed in comm_allgather_pml. Error code: %d", rc);
goto Error;
}
/* Phase four:
loop through the receive buffer, unpack the data recieved from remote peers */
for (i = 0; i < module->group_size; i++) {
struct file_info_t *rem_file = all_files + i;
/* check if this is my index or if the file is already mapped (set above). ther
* is no reason to look through the peer list again because no two members of
* the group will have the same vpid/jobid pair. ignore this previously found
* mapping if map_all was requested (NTH: not sure why exactly since we re-map
* and already mapped file) */
if (sm_bcol_module->super.sbgp_partner_module->my_index == i) {
continue;
}
proc_temp = ompi_comm_peer_lookup(comm,module->group_list[i]);
OPAL_LIST_FOREACH(item_ptr, peer_list, bcol_basesmuma_smcm_proc_item_t) {
/* if the vpid/jobid/filename combination already exists in the list,
then do not map this peer's file --- because you already have */
if (proc_temp->proc_name.vpid == item_ptr->peer.vpid &&
proc_temp->proc_name.jobid == item_ptr->peer.jobid &&
0 == strcmp (item_ptr->sm_file.file_name, rem_file->file_name)) {
++item_ptr->refcnt;
/* record file data */
backing_files[i] = item_ptr;
break;
}
}
if (!map_all && backing_files[i]) {
continue;
}
temp = OBJ_NEW(bcol_basesmuma_smcm_proc_item_t);
if (!temp) {
rc = OMPI_ERR_OUT_OF_RESOURCE;
goto Error;
}
temp->peer.vpid = rem_file->vpid;
temp->peer.jobid = rem_file->jobid;
temp->sm_file.file_name = strdup (rem_file->file_name);
if (!temp->sm_file.file_name) {
rc = OMPI_ERR_OUT_OF_RESOURCE;
OBJ_RELEASE(temp);
goto Error;
}
temp->sm_file.size = (size_t) rem_file->file_size;
temp->sm_file.mpool_size = (size_t) rem_file->file_size;
temp->sm_file.size_ctl_structure = (size_t) rem_file->size_ctl_structure;
temp->sm_file.data_seg_alignment = (size_t) rem_file->data_seg_alignment;
temp->refcnt = 1;
/* Phase Five:
If map_all == true, then we map every peer's file
else we check to see if I have already mapped this
vpid/jobid/filename combination and if I have, then
I do not mmap this peer's file.
*
*/
fd = open(temp->sm_file.file_name, O_RDWR, 0600);
if (0 > fd) {
opal_output (ompi_bcol_base_framework.framework_output, "SMCM Allgather failed to open sm backing file %s. errno = %d",
temp->sm_file.file_name, errno);
rc = OMPI_ERROR;
goto Error;
}
/* map the file */
temp->sm_mmap = bcol_basesmuma_smcm_reg_mmap (NULL, fd, temp->sm_file.size,
temp->sm_file.size_ctl_structure,
temp->sm_file.data_seg_alignment,
temp->sm_file.file_name);
close (fd);
if (NULL == temp->sm_mmap) {
opal_output (ompi_bcol_base_framework.framework_output, "mmapping failed to map remote peer's file");
OBJ_RELEASE(temp);
rc = OMPI_ERROR;
goto Error;
}
/* compute memory offset */
mem_offset = (ptrdiff_t) temp->sm_mmap->data_addr -
(ptrdiff_t) temp->sm_mmap->map_seg;
temp->sm_mmap->map_seg->seg_offset = mem_offset;
temp->sm_mmap->map_seg->seg_size = temp->sm_file.size - mem_offset;
/* more stuff to follow */
/* append this peer's info, including shared memory map addr, onto the
peer_list */
/* record file data */
backing_files[i] = (bcol_basesmuma_smcm_proc_item_t *) temp;
opal_list_append(peer_list, (opal_list_item_t*) temp);
}
rc = OMPI_SUCCESS;
Error:
/* error clean-up and return */
if (NULL != all_files) {
free(all_files);
}
return rc;
}
int bcol_basesmuma_smcm_release_connections (mca_bcol_basesmuma_module_t *sm_bcol_module,
mca_sbgp_base_module_t *sbgp_module, opal_list_t *peer_list,
bcol_basesmuma_smcm_proc_item_t ***back_files)
{
bcol_basesmuma_smcm_proc_item_t **smcm_procs = *back_files;
for (int i = 0 ; i < sbgp_module->group_size ; ++i) {
if (smcm_procs[i] && 0 == --smcm_procs[i]->refcnt) {
opal_list_remove_item (peer_list, (opal_list_item_t *) smcm_procs[i]);
OBJ_RELEASE(smcm_procs[i]);
}
}
free (smcm_procs);
*back_files = NULL;
return OMPI_SUCCESS;
}
/*
* mmap the specified file as a shared file. No information exchange with other
* processes takes place within this routine.
* This function assumes that the memory has already been allocated, and only the
* mmap needs to be done.
*/
bcol_basesmuma_smcm_mmap_t *bcol_basesmuma_smcm_mem_reg(void *in_ptr,
size_t length,
size_t alignment,
char* file_name)
{
/* local variables */
int fd = -1;
bcol_basesmuma_smcm_mmap_t *map = NULL;
int rc;
/* if pointer is not allocated - return error. We have no clue how the user will allocate or
* free this memory.
*/
/* open the shared memory backing file */
fd = open(file_name, O_CREAT|O_RDWR,0600);
if (fd < 0) {
opal_output (ompi_bcol_base_framework.framework_output, "basesmuma shared memory allocation open failed with errno: %d",
errno);
} else if (0 != ftruncate(fd,length)) {
opal_output (ompi_bcol_base_framework.framework_output, "basesmuma shared memory allocation ftruncate failed with errno: %d",
errno);
} else {
/* ensure there is enough space for the backing store */
rc = ftruncate (fd, length);
if (0 > rc) {
opal_output (ompi_bcol_base_framework.framework_output, "failed to truncate the file to be mapped. errno: %d", errno);
return NULL;
}
map = bcol_basesmuma_smcm_reg_mmap(in_ptr, fd, length, 0, alignment, file_name);
if (NULL == map) {
return NULL;
}
}
/* no longer need this file descriptor. close it */
close (fd);
/* takes us to the top of the control structure */
return map;
}
static bcol_basesmuma_smcm_mmap_t * bcol_basesmuma_smcm_reg_mmap(void *in_ptr, int fd, size_t length,
size_t addr_offset, size_t alignment,
char *file_name)
{
/* local variables */
bcol_basesmuma_smcm_mmap_t *map;
bcol_basesmuma_smcm_file_header_t *seg;
unsigned char* myaddr = NULL;
int flags = MAP_SHARED;
/* set up the map object */
map = OBJ_NEW(bcol_basesmuma_smcm_mmap_t);
if (OPAL_UNLIKELY(NULL == map)) {
return NULL;
}
/* map the file and initialize the segment state */
if (NULL != in_ptr) {
flags |= MAP_FIXED;
}
seg = (bcol_basesmuma_smcm_file_header_t *)
mmap(in_ptr, length, PROT_READ|PROT_WRITE, flags, fd, 0);
if((void*)-1 == seg) {
OBJ_RELEASE(map);
return NULL;
}
map->map_path = strdup (file_name);
/* the first entry in the file is the control structure. the first entry
in the control structure is an mca_common_sm_file_header_t element */
map->map_seg = seg;
myaddr = (unsigned char *) seg + addr_offset;
/* if we have a data segment (i.e. if 0 != data_seg_alignement) */
if (alignment) {
myaddr = OPAL_ALIGN_PTR(myaddr, alignment, unsigned char*);
/* is addr past the end of the file? */
if ((unsigned char *) seg+length < myaddr) {
opal_output (ompi_bcol_base_framework.framework_output, "mca_bcol_basesmuma_sm_alloc_mmap: memory region too small len %lu add %p",
(unsigned long) length, myaddr);
OBJ_RELEASE(map);
munmap (seg, length);
return NULL;
}
}
map->data_addr = (unsigned char*) myaddr;
map->map_addr = (unsigned char*) seg;
map->map_size = length;
return map;
}