/* -*- Mode: C; c-basic-offset:4 ; indent-tabs-mode:nil -*- */ /* * Copyright (c) 2004-2005 The Trustees of Indiana University and Indiana * University Research and Technology * Corporation. All rights reserved. * Copyright (c) 2004-2015 The University of Tennessee and The University * of Tennessee Research Foundation. All rights * reserved. * Copyright (c) 2004-2005 High Performance Computing Center Stuttgart, * University of Stuttgart. All rights reserved. * Copyright (c) 2004-2005 The Regents of the University of California. * All rights reserved. * Copyright (c) 2013 Los Alamos National Security, LLC. All Rights * reserved. * Copyright (c) 2014-2015 Research Organization for Information Science * and Technology (RIST). All rights reserved. * $COPYRIGHT$ * * Additional copyrights may follow * * $HEADER$ */ #include "ompi_config.h" #include "mpi.h" #include "ompi/constants.h" #include "ompi/datatype/ompi_datatype.h" #include "ompi/communicator/communicator.h" #include "ompi/mca/coll/coll.h" #include "ompi/mca/coll/base/coll_tags.h" #include "ompi/mca/pml/pml.h" #include "ompi/mca/coll/base/coll_base_functions.h" #include "coll_base_topo.h" #include "coll_base_util.h" /* MPI_IN_PLACE all to all algorithm. TODO: implement a better one. */ int mca_coll_base_alltoall_intra_basic_inplace(const void *rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module) { mca_coll_base_module_t *base_module = (mca_coll_base_module_t*) module; int i, j, size, rank, err=MPI_SUCCESS; MPI_Request *preq; char *tmp_buffer; size_t max_size; ptrdiff_t ext; /* Initialize. */ size = ompi_comm_size(comm); rank = ompi_comm_rank(comm); /* If only one process, we're done. */ if (1 == size) { return MPI_SUCCESS; } /* Find the largest receive amount */ ompi_datatype_type_extent (rdtype, &ext); max_size = ext * rcount; /* Allocate a temporary buffer */ tmp_buffer = calloc (max_size, 1); if (NULL == tmp_buffer) { return OMPI_ERR_OUT_OF_RESOURCE; } /* in-place alltoall slow algorithm (but works) */ for (i = 0 ; i < size ; ++i) { for (j = i+1 ; j < size ; ++j) { /* Initiate all send/recv to/from others. */ preq = coll_base_comm_get_reqs(base_module->base_data, size * 2); if (i == rank) { /* Copy the data into the temporary buffer */ err = ompi_datatype_copy_content_same_ddt (rdtype, rcount, tmp_buffer, (char *) rbuf + j * max_size); if (MPI_SUCCESS != err) { goto error_hndl; } /* Exchange data with the peer */ err = MCA_PML_CALL(irecv ((char *) rbuf + max_size * j, rcount, rdtype, j, MCA_COLL_BASE_TAG_ALLTOALL, comm, preq++)); if (MPI_SUCCESS != err) { goto error_hndl; } err = MCA_PML_CALL(isend ((char *) tmp_buffer, rcount, rdtype, j, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD, comm, preq++)); if (MPI_SUCCESS != err) { goto error_hndl; } } else if (j == rank) { /* Copy the data into the temporary buffer */ err = ompi_datatype_copy_content_same_ddt (rdtype, rcount, tmp_buffer, (char *) rbuf + i * max_size); if (MPI_SUCCESS != err) { goto error_hndl; } /* Exchange data with the peer */ err = MCA_PML_CALL(irecv ((char *) rbuf + max_size * i, rcount, rdtype, i, MCA_COLL_BASE_TAG_ALLTOALL, comm, preq++)); if (MPI_SUCCESS != err) { goto error_hndl; } err = MCA_PML_CALL(isend ((char *) tmp_buffer, rcount, rdtype, i, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD, comm, preq++)); if (MPI_SUCCESS != err) { goto error_hndl; } } else { continue; } /* Wait for the requests to complete */ err = ompi_request_wait_all (2, base_module->base_data->mcct_reqs, MPI_STATUSES_IGNORE); if (MPI_SUCCESS != err) { goto error_hndl; } } } error_hndl: /* Free the temporary buffer */ free (tmp_buffer); /* All done */ return err; } int ompi_coll_base_alltoall_intra_pairwise(const void *sbuf, int scount, struct ompi_datatype_t *sdtype, void* rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module) { int line = -1, err = 0, rank, size, step, sendto, recvfrom; void * tmpsend, *tmprecv; ptrdiff_t lb, sext, rext; if (MPI_IN_PLACE == sbuf) { return mca_coll_base_alltoall_intra_basic_inplace (rbuf, rcount, rdtype, comm, module); } size = ompi_comm_size(comm); rank = ompi_comm_rank(comm); OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "coll:base:alltoall_intra_pairwise rank %d", rank)); err = ompi_datatype_get_extent (sdtype, &lb, &sext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } err = ompi_datatype_get_extent (rdtype, &lb, &rext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* Perform pairwise exchange - starting from 1 so the local copy is last */ for (step = 1; step < size + 1; step++) { /* Determine sender and receiver for this step. */ sendto = (rank + step) % size; recvfrom = (rank + size - step) % size; /* Determine sending and receiving locations */ tmpsend = (char*)sbuf + (ptrdiff_t)sendto * sext * (ptrdiff_t)scount; tmprecv = (char*)rbuf + (ptrdiff_t)recvfrom * rext * (ptrdiff_t)rcount; /* send and receive */ err = ompi_coll_base_sendrecv( tmpsend, scount, sdtype, sendto, MCA_COLL_BASE_TAG_ALLTOALL, tmprecv, rcount, rdtype, recvfrom, MCA_COLL_BASE_TAG_ALLTOALL, comm, MPI_STATUS_IGNORE, rank); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } } return MPI_SUCCESS; err_hndl: OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "%s:%4d\tError occurred %d, rank %2d", __FILE__, line, err, rank)); return err; } int ompi_coll_base_alltoall_intra_bruck(const void *sbuf, int scount, struct ompi_datatype_t *sdtype, void* rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module) { int i, k, line = -1, rank, size, err = 0; int sendto, recvfrom, distance, *displs = NULL, *blen = NULL; char *tmpbuf = NULL, *tmpbuf_free = NULL; ptrdiff_t rlb, slb, tlb, sext, rext, tsext; struct ompi_datatype_t *new_ddt; if (MPI_IN_PLACE == sbuf) { return mca_coll_base_alltoall_intra_basic_inplace (rbuf, rcount, rdtype, comm, module); } size = ompi_comm_size(comm); rank = ompi_comm_rank(comm); OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "coll:base:alltoall_intra_bruck rank %d", rank)); err = ompi_datatype_get_extent (sdtype, &slb, &sext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } err = ompi_datatype_get_true_extent(sdtype, &tlb, &tsext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } err = ompi_datatype_get_extent (rdtype, &rlb, &rext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } displs = (int *) malloc(size * sizeof(int)); if (displs == NULL) { line = __LINE__; err = -1; goto err_hndl; } blen = (int *) malloc(size * sizeof(int)); if (blen == NULL) { line = __LINE__; err = -1; goto err_hndl; } /* tmp buffer allocation for message data */ tmpbuf_free = (char *) malloc(tsext + ((ptrdiff_t)scount * (ptrdiff_t)size - 1) * sext); if (tmpbuf_free == NULL) { line = __LINE__; err = -1; goto err_hndl; } tmpbuf = tmpbuf_free - slb; /* Step 1 - local rotation - shift up by rank */ err = ompi_datatype_copy_content_same_ddt (sdtype, (int32_t) ((ptrdiff_t)(size - rank) * (ptrdiff_t)scount), tmpbuf, ((char*) sbuf) + (ptrdiff_t)rank * (ptrdiff_t)scount * sext); if (err<0) { line = __LINE__; err = -1; goto err_hndl; } if (rank != 0) { err = ompi_datatype_copy_content_same_ddt (sdtype, (ptrdiff_t)rank * (ptrdiff_t)scount, tmpbuf + (ptrdiff_t)(size - rank) * (ptrdiff_t)scount* sext, (char*) sbuf); if (err<0) { line = __LINE__; err = -1; goto err_hndl; } } /* perform communication step */ for (distance = 1; distance < size; distance<<=1) { sendto = (rank + distance) % size; recvfrom = (rank - distance + size) % size; k = 0; /* create indexed datatype */ for (i = 1; i < size; i++) { if (( i & distance) == distance) { displs[k] = (ptrdiff_t)i * (ptrdiff_t)scount; blen[k] = scount; k++; } } /* Set indexes and displacements */ err = ompi_datatype_create_indexed(k, blen, displs, sdtype, &new_ddt); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* Commit the new datatype */ err = ompi_datatype_commit(&new_ddt); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* Sendreceive */ err = ompi_coll_base_sendrecv ( tmpbuf, 1, new_ddt, sendto, MCA_COLL_BASE_TAG_ALLTOALL, rbuf, 1, new_ddt, recvfrom, MCA_COLL_BASE_TAG_ALLTOALL, comm, MPI_STATUS_IGNORE, rank ); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* Copy back new data from recvbuf to tmpbuf */ err = ompi_datatype_copy_content_same_ddt(new_ddt, 1,tmpbuf, (char *) rbuf); if (err < 0) { line = __LINE__; err = -1; goto err_hndl; } /* free ddt */ err = ompi_datatype_destroy(&new_ddt); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } } /* end of for (distance = 1... */ /* Step 3 - local rotation - */ for (i = 0; i < size; i++) { err = ompi_datatype_copy_content_same_ddt (rdtype, (int32_t) rcount, ((char*)rbuf) + ((ptrdiff_t)((rank - i + size) % size) * (ptrdiff_t)rcount * rext), tmpbuf + (ptrdiff_t)i * (ptrdiff_t)rcount * rext); if (err < 0) { line = __LINE__; err = -1; goto err_hndl; } } /* Step 4 - clean up */ if (tmpbuf != NULL) free(tmpbuf_free); if (displs != NULL) free(displs); if (blen != NULL) free(blen); return OMPI_SUCCESS; err_hndl: OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "%s:%4d\tError occurred %d, rank %2d", __FILE__, line, err, rank)); if (tmpbuf != NULL) free(tmpbuf_free); if (displs != NULL) free(displs); if (blen != NULL) free(blen); return err; } /* * alltoall_intra_linear_sync * * Function: Linear implementation of alltoall with limited number * of outstanding requests. * Accepts: Same as MPI_Alltoall(), and the maximum number of * outstanding requests (actual number is 2 * max, since * we count receive and send requests separately). * Returns: MPI_SUCCESS or error code * * Description: Algorithm is the following: * 1) post K irecvs, K <= N * 2) post K isends, K <= N * 3) while not done * - wait for any request to complete * - replace that request by the new one of the same type. */ int ompi_coll_base_alltoall_intra_linear_sync(const void *sbuf, int scount, struct ompi_datatype_t *sdtype, void* rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module, int max_outstanding_reqs) { int line, error, ri, si, rank, size, nreqs, nrreqs, nsreqs, total_reqs; char *psnd, *prcv; ptrdiff_t slb, sext, rlb, rext; ompi_request_t **reqs = NULL; if (MPI_IN_PLACE == sbuf) { return mca_coll_base_alltoall_intra_basic_inplace (rbuf, rcount, rdtype, comm, module); } /* Initialize. */ size = ompi_comm_size(comm); rank = ompi_comm_rank(comm); OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "ompi_coll_base_alltoall_intra_linear_sync rank %d", rank)); error = ompi_datatype_get_extent(sdtype, &slb, &sext); if (OMPI_SUCCESS != error) { return error; } sext *= scount; error = ompi_datatype_get_extent(rdtype, &rlb, &rext); if (OMPI_SUCCESS != error) { return error; } rext *= rcount; /* simple optimization */ psnd = ((char *) sbuf) + (ptrdiff_t)rank * sext; prcv = ((char *) rbuf) + (ptrdiff_t)rank * rext; error = ompi_datatype_sndrcv(psnd, scount, sdtype, prcv, rcount, rdtype); if (MPI_SUCCESS != error) { return error; } /* If only one process, we're done. */ if (1 == size) { return MPI_SUCCESS; } /* Initiate send/recv to/from others. */ total_reqs = (((max_outstanding_reqs > (size - 1)) || (max_outstanding_reqs <= 0)) ? (size - 1) : (max_outstanding_reqs)); reqs = (ompi_request_t**) malloc( 2 * total_reqs * sizeof(ompi_request_t*)); if (NULL == reqs) { error = -1; line = __LINE__; goto error_hndl; } prcv = (char *) rbuf; psnd = (char *) sbuf; /* Post first batch or ireceive and isend requests */ for (nreqs = 0, nrreqs = 0, ri = (rank + 1) % size; nreqs < total_reqs; ri = (ri + 1) % size, ++nreqs, ++nrreqs) { error = MCA_PML_CALL(irecv (prcv + (ptrdiff_t)ri * rext, rcount, rdtype, ri, MCA_COLL_BASE_TAG_ALLTOALL, comm, &reqs[nreqs])); if (MPI_SUCCESS != error) { line = __LINE__; goto error_hndl; } } for ( nsreqs = 0, si = (rank + size - 1) % size; nreqs < 2 * total_reqs; si = (si + size - 1) % size, ++nreqs, ++nsreqs) { error = MCA_PML_CALL(isend (psnd + (ptrdiff_t)si * sext, scount, sdtype, si, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD, comm, &reqs[nreqs])); if (MPI_SUCCESS != error) { line = __LINE__; goto error_hndl; } } /* Wait for requests to complete */ if (nreqs == 2 * (size - 1)) { /* Optimization for the case when all requests have been posted */ error = ompi_request_wait_all(nreqs, reqs, MPI_STATUSES_IGNORE); if (MPI_SUCCESS != error) { line = __LINE__; goto error_hndl; } } else { /* As requests complete, replace them with corresponding requests: - wait for any request to complete, mark the request as MPI_REQUEST_NULL - If it was a receive request, replace it with new irecv request (if any) - if it was a send request, replace it with new isend request (if any) */ int ncreqs = 0; while (ncreqs < 2 * (size - 1)) { int completed; error = ompi_request_wait_any(2 * total_reqs, reqs, &completed, MPI_STATUS_IGNORE); if (MPI_SUCCESS != error) { line = __LINE__; goto error_hndl; } reqs[completed] = MPI_REQUEST_NULL; ncreqs++; if (completed < total_reqs) { if (nrreqs < (size - 1)) { error = MCA_PML_CALL(irecv (prcv + (ptrdiff_t)ri * rext, rcount, rdtype, ri, MCA_COLL_BASE_TAG_ALLTOALL, comm, &reqs[completed])); if (MPI_SUCCESS != error) { line = __LINE__; goto error_hndl; } ++nrreqs; ri = (ri + 1) % size; } } else { if (nsreqs < (size - 1)) { error = MCA_PML_CALL(isend (psnd + (ptrdiff_t)si * sext, scount, sdtype, si, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD, comm, &reqs[completed])); ++nsreqs; si = (si + size - 1) % size; } } } } /* Free the reqs */ free(reqs); /* All done */ return MPI_SUCCESS; error_hndl: OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "%s:%4d\tError occurred %d, rank %2d", __FILE__, line, error, rank)); if (NULL != reqs) free(reqs); return error; } int ompi_coll_base_alltoall_intra_two_procs(const void *sbuf, int scount, struct ompi_datatype_t *sdtype, void* rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module) { int line = -1, err = 0, rank, remote; void * tmpsend, *tmprecv; ptrdiff_t sext, rext, lb; if (MPI_IN_PLACE == sbuf) { return mca_coll_base_alltoall_intra_basic_inplace (rbuf, rcount, rdtype, comm, module); } rank = ompi_comm_rank(comm); OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "ompi_coll_base_alltoall_intra_two_procs rank %d", rank)); err = ompi_datatype_get_extent (sdtype, &lb, &sext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } err = ompi_datatype_get_extent (rdtype, &lb, &rext); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* exchange data */ remote = rank ^ 1; tmpsend = (char*)sbuf + (ptrdiff_t)remote * sext * (ptrdiff_t)scount; tmprecv = (char*)rbuf + (ptrdiff_t)remote * rext * (ptrdiff_t)rcount; /* send and receive */ err = ompi_coll_base_sendrecv ( tmpsend, scount, sdtype, remote, MCA_COLL_BASE_TAG_ALLTOALL, tmprecv, rcount, rdtype, remote, MCA_COLL_BASE_TAG_ALLTOALL, comm, MPI_STATUS_IGNORE, rank ); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* ddt sendrecv your own data */ err = ompi_datatype_sndrcv((char*) sbuf + (ptrdiff_t)rank * sext * (ptrdiff_t)scount, (int32_t) scount, sdtype, (char*) rbuf + (ptrdiff_t)rank * rext * (ptrdiff_t)rcount, (int32_t) rcount, rdtype); if (err != MPI_SUCCESS) { line = __LINE__; goto err_hndl; } /* done */ return MPI_SUCCESS; err_hndl: OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "%s:%4d\tError occurred %d, rank %2d", __FILE__, line, err, rank)); return err; } /* * Linear functions are copied from the BASIC coll module * they do not segment the message and are simple implementations * but for some small number of nodes and/or small data sizes they * are just as fast as base/tree based segmenting operations * and as such may be selected by the decision functions * These are copied into this module due to the way we select modules * in V1. i.e. in V2 we will handle this differently and so will not * have to duplicate code. * GEF Oct05 after asking Jeff. */ /* copied function (with appropriate renaming) starts here */ int ompi_coll_base_alltoall_intra_basic_linear(const void *sbuf, int scount, struct ompi_datatype_t *sdtype, void* rbuf, int rcount, struct ompi_datatype_t *rdtype, struct ompi_communicator_t *comm, mca_coll_base_module_t *module) { int i, rank, size, err, nreqs; char *psnd, *prcv; MPI_Aint lb, sndinc, rcvinc; ompi_request_t **req, **sreq, **rreq; mca_coll_base_module_t *base_module = (mca_coll_base_module_t*) module; mca_coll_base_comm_t *data = base_module->base_data; if (MPI_IN_PLACE == sbuf) { return mca_coll_base_alltoall_intra_basic_inplace (rbuf, rcount, rdtype, comm, module); } /* Initialize. */ size = ompi_comm_size(comm); rank = ompi_comm_rank(comm); OPAL_OUTPUT((ompi_coll_base_framework.framework_output, "ompi_coll_base_alltoall_intra_basic_linear rank %d", rank)); err = ompi_datatype_get_extent(sdtype, &lb, &sndinc); if (OMPI_SUCCESS != err) { return err; } sndinc *= scount; err = ompi_datatype_get_extent(rdtype, &lb, &rcvinc); if (OMPI_SUCCESS != err) { return err; } rcvinc *= rcount; /* simple optimization */ psnd = ((char *) sbuf) + (ptrdiff_t)rank * sndinc; prcv = ((char *) rbuf) + (ptrdiff_t)rank * rcvinc; err = ompi_datatype_sndrcv(psnd, scount, sdtype, prcv, rcount, rdtype); if (MPI_SUCCESS != err) { return err; } /* If only one process, we're done. */ if (1 == size) { return MPI_SUCCESS; } /* Initiate all send/recv to/from others. */ req = rreq = coll_base_comm_get_reqs(data, (size - 1) * 2); prcv = (char *) rbuf; psnd = (char *) sbuf; /* Post all receives first -- a simple optimization */ for (nreqs = 0, i = (rank + 1) % size; i != rank; i = (i + 1) % size, ++rreq, ++nreqs) { err = MCA_PML_CALL(irecv_init (prcv + (ptrdiff_t)i * rcvinc, rcount, rdtype, i, MCA_COLL_BASE_TAG_ALLTOALL, comm, rreq)); if (MPI_SUCCESS != err) { ompi_coll_base_free_reqs(req, nreqs); return err; } } /* Now post all sends in reverse order - We would like to minimize the search time through message queue when messages actually arrive in the order in which they were posted. */ sreq = rreq; for (i = (rank + size - 1) % size; i != rank; i = (i + size - 1) % size, ++sreq, ++nreqs) { err = MCA_PML_CALL(isend_init (psnd + (ptrdiff_t)i * sndinc, scount, sdtype, i, MCA_COLL_BASE_TAG_ALLTOALL, MCA_PML_BASE_SEND_STANDARD, comm, sreq)); if (MPI_SUCCESS != err) { ompi_coll_base_free_reqs(req, nreqs); return err; } } /* Start your engines. This will never return an error. */ MCA_PML_CALL(start(nreqs, req)); /* Wait for them all. If there's an error, note that we don't * care what the error was -- just that there *was* an error. The * PML will finish all requests, even if one or more of them fail. * i.e., by the end of this call, all the requests are free-able. * So free them anyway -- even if there was an error, and return * the error after we free everything. */ err = ompi_request_wait_all(nreqs, req, MPI_STATUSES_IGNORE); /* Free the reqs */ ompi_coll_base_free_reqs(req, nreqs); /* All done */ return err; } /* copied function (with appropriate renaming) ends here */