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1189 Коммитов

Автор SHA1 Сообщение Дата
Xi Luo
fe73586808 Add ADAPT module
Add comments in the ADAPT module

Signed-off-by: Xi Luo <xluo12@vols.utk.edu>
Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2020-08-24 12:13:38 -07:00
Brian Barrett
41df122083
Merge pull request #7730 from wckzhang/newdefaults
coll/tuned: Change the default collective algorithm selection
2020-07-28 15:27:46 -07:00
William Zhang
ce40cfbaa5 coll/tuned: Change the default collective algorithm selection
The default algorithm selections were out of date and not performing
well. After gathering data from OMPI developers, new default algorithm
decisions were selected for:

    allgather
    allgatherv
    allreduce
    alltoall
    alltoallv
    barrier
    bcast
    gather
    reduce
    reduce_scatter_block
    reduce_scatter
    scatter

These results were gathered using the ompi-collectives-tuning package
and then averaged amongst the results gathered from multiple OMPI
developers on their clusters.

You can access the graphs and averaged data here:
https://drive.google.com/drive/folders/1MV5E9gN-5tootoWoh62aoXmN0jiWiqh3

Signed-off-by: William Zhang <wilzhang@amazon.com>
2020-07-28 10:41:48 -07:00
Joshua Ladd
366e92ce54
Merge pull request #7860 from vspetrov/hcoll_reduce_scatter
Coll/Hcoll: reduce_scatter(block) interface
2020-07-22 09:45:34 -04:00
Todd Kordenbrock
4358e75a75
Merge pull request #7866 from tkordenbrock/topic/master/portals4.fix-inappropriate-use-of-abort
portals4: fix inappropriate use of abort() in mtl-portals4 and coll-portals4 components
2020-06-30 08:46:03 -05:00
Valentin Petrov
d366812030 coll/hcoll: compile warning fix
Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2020-06-30 09:44:46 +03:00
Valentin Petrov
1d54071fc1 coll/hcoll: reduce_scatter(block) interface
Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2020-06-30 09:44:46 +03:00
Todd Kordenbrock
04b94637dd mtl-portals4: replace abort() with ompi_rte_abort()
coll-portals4: replace abort() with ompi_rte_abort()

Signed-off-by: Todd Kordenbrock <thkgcode@gmail.com>
2020-06-24 11:31:26 -05:00
Joseph Schuchart
9a60f5b7fb Add missing free calls to ompi_coll_base_reduce_intra_basic_linear
Signed-off-by: Joseph Schuchart <schuchart@hlrs.de>
2020-06-19 12:27:36 +02:00
Joseph Schuchart
8e24c0d532 Add missing free calls to ompi_coll_base_allgather_intra_bruck
Signed-off-by: Joseph Schuchart <schuchart@hlrs.de>
2020-06-19 12:24:56 +02:00
Sergey Oblomov
df0f2ac026 OMPI/HCOLL: fixed typo in vars description
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2020-05-29 20:13:35 +03:00
William Zhang
50823fe9a9 coll/tuned: Fix dynamic message size for gather and scatter
The gather and scatter operations did not use the correct message size
(Only did datatype size * com size). This did not correctly reflect the
total message size and prevents fine tuning within a com size. This
patch multiplies the value by the number of elements sent.

Signed-off-by: William Zhang <wilzhang@amazon.com>
2020-05-14 12:17:52 -07:00
William Zhang
771f9c011d coll/tuned: Add NULL check to prevent segfault
Signed-off-by: William Zhang <wilzhang@amazon.com>

cr https://code.amazon.com/reviews/CR-23837553
2020-04-21 17:53:46 +00:00
William Zhang
50640402ab coll/tuned: Fix typos
Signed-off-by: William Zhang <wilzhang@amazon.com>
2020-04-21 17:39:37 +00:00
Nathan Hjelm
160ff188b8
Merge pull request #7169 from hjelmn/fix_what_wg21_calls_our_problem_not_theirs_seriously__in_some_ways_they_are_correct_but_wtf
configure: use -iquote for non-system include paths
2020-03-30 09:22:54 -07:00
Mikhail Kurnosov
66b6b8d34e Fix Bcast scatter_allgather
Signed-off-by: Mikhail Kurnosov <mkurnosov@gmail.com>
2020-03-11 12:47:47 +07:00
Gilles Gouaillardet
69bc2e8372 misc: fix <> vs "" includes throught the ompi codebase
This commit fixes an issue with the include usage in some
ompi source files. These source files are using the <> form
of include when the "" form is correct (as these are internal,
**not** system headers).

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2020-03-09 21:13:49 -04:00
bosilca
c4d36859ec
Merge pull request #7228 from devreal/progress-returns
Harmonize return values of progress callbacks
2020-02-28 20:15:37 -05:00
Gilles Gouaillardet
174e967dbc
Remove ORTE project
Will be replaced by PRRTE. Ensure that OMPI and OPAL layers build
without reference to ORTE. Setup opal/pmix framework to be static.
Remove support for all PMI-1 and PMI-2 libraries. Add support for
"external" pmix component as well as internal v4 one.

remove orte: misc fixes

 - UCX fixes
 - VPATH issue
 - oshmem fixes
 - remove useless definition
 - Add PRRTE submodule
 - Get autogen.pl to traverse PRRTE submodule
 - Remove stale orcm reference
 - Configure embedded PRRTE
 - Correctly pass the prefix to PRRTE
 - Correctly set the OMPI_WANT_PRRTE am_conditional
 - Move prrte configuration to the end of OMPI's configure.ac
 - Make mpirun a symlink to prun, when available
 - Fix makedist with --no-orte/--no-prrte option
 - Add a `--no-prrte` option which is the same as the legacy
   `--no-orte` option.
 - Remove embedded PMIx tarball. Replace it with new submodule
   pointing to OpenPMIx master repo's master branch
 - Some cleanup in PRRTE integration and add config summary entry
 - Correctly set the hostname
 - Fix locality
 - Fix singleton operations
 - Fix support for "tune" and "am" options

Signed-off-by: Ralph Castain <rhc@pmix.org>
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2020-02-07 18:20:06 -08:00
Joseph Schuchart
2c97187ee0 Harmonize return values of progress callbacks
Signed-off-by: Joseph Schuchart <schuchart@hlrs.de>
2020-01-28 20:15:03 +01:00
Austen Lauria
969eb0286c
Merge pull request #6970 from ggouaillardet/topic/cuda_no_orte
coll/cuda: remove unnecessary references to ORTE
2020-01-27 13:12:32 -05:00
Austen Lauria
b65ec27307 Fix some compiler warnings.
Silence unused variables, incompatible pointer types,
un-initialized variables, and signed/unsigned comparisons.

Signed-off-by: Austen Lauria <awlauria@us.ibm.com>
2020-01-10 13:10:53 -05:00
Jeff Squyres
8b424c3863
Merge pull request #7232 from bosilca/hjelmn_neighbor_alltoall_fix
Neighbor alltoall fix
2019-12-17 17:24:05 -05:00
George Bosilca
86acdee460
Fix the communication ordering for all cartesian neighbor collectives.
This work is rooted in the [MPI Forum issue
153](https://github.com/mpi-forum/mpi-issues/issues/153).

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2019-12-11 12:40:38 -05:00
Maxwell Coil
52241dbbcd libnbc: fixed uninitialized variable
Squash compiler warning.

Signed-off-by: Maxwell Coil <mcoil@nd.edu>
2019-12-08 14:03:48 -05:00
Mikhail Brinskii
f2cbd4806e COLL/TUNED: Add linear scatter using isend for mlnx platform
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-11-07 11:04:39 +02:00
Nathan Hjelm
196a91e604 coll/basic: fix neighbor alltoall message ordering
This commit updates the coll/basic component to correctly order sends
and receives for cartesian communicators with cyclic boundaries. This
addresses an issue identified by mpi-forum/mpi-issues#153. This issue
occurs when the size in any dimension is 1. This gives the same
neighbor in the positive and negative directions. The old code was
sending and receiving in the same order so the -1 buffer contained
the +1 result and vise-versa. The problem is addressed by using
unique tags for each send. This should cover both the case where
overtaking is allowed and is not allowed. The former case will be
possible is a MPI_Cart_create_with_info() call is added to the
standard.

Signed-off-by: Nathan Hjelm <hjelmn@google.com>
2019-10-08 21:10:49 -07:00
Gilles Gouaillardet
531171ca50 coll/cuda: remove unnecessary references to ORTE
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-09-10 13:55:59 +09:00
Valentin Petrov
a0d99ad190 Coll/hcoll: fixes hcoll non-blocking colls support
open-mpi/ompi@0fe756d416 Introduced
    a bug in coll/hcoll component. The ompi_requests allocated by
    libhcoll would be treated as coll_base_nbc_request during
    ompi_coll_base_retain_<> call. Afterwards this would lead to a
    segv in the request cleanup.

    Fix: since libhcoll interface does not distinguish between the
    blocling/non-blocking requests use coll_base_nbc_request all the
    time and initialize it properly in
    coll/hcoll/get_coll_handle(). It is still within 2 cache lines.

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2019-08-27 17:22:58 +03:00
Gilles Gouaillardet
63d3ccde9d coll/base: only retain datatypes/op if the request has not yet completed
a non blocking collective might return ompi_request_null, so we should not
retain anything in that case.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-08-09 09:57:56 +09:00
Gilles Gouaillardet
0862c409f1 coll/base: cleanup ompi_coll_base_nbc_request_t elements
Since ompi_coll_base_nbc_request_t is to be used in an
opal_free_list_t, it must be returned into a "clean" state.
So cleanup some data in the callback completion subroutines.

This fixes a regression introduced in open-mpi/ompi@0fe756d416

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-08-08 10:48:06 +09:00
Gilles Gouaillardet
f8eef0fde9 coll/libnbc: fixes ompi ompi_coll_libnbc_request_t parent
base ompi_coll_libnbc_request_t on top of ompi_coll_base_nbc_request_t
to correctly support the retention of datatypes/operators

This fixes a regression introduced in open-mpi/ompi@0fe756d416

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-08-08 10:47:48 +09:00
Yossi Itigin
98d0ecfe14
Merge pull request #6814 from brminich/tuned_all2all_select
COLL/TUNED: Update alltoall selection rule for mellanox platform
2019-07-25 17:51:55 +03:00
Mikhail Brinskii
65618f8db8 COLL/TUNED: Minor var names/comments fixes
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-07-24 10:23:38 +00:00
Mikhail Brinskii
404c480068 COLL/TUNED: Update alltoall selection rule for mlx
Use linear with sync alltoall algorithm for certain message/comm size
ranges. Does not affect default fixed decision, unless HPCX (with its
custom parameters) is used or corresponding mca is set.

Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-07-13 23:27:40 +03:00
Gilles Gouaillardet
0fe756d416 mpi: retain operation and datatype in non blocking collectives
MPI standard states a user MPI_Op and/or user MPI_Datatype can be free'd
after a call to a non blocking collective and before the non-blocking
collective completes.
Retain user (only) MPI_Op and MPI_Datatype when the non blocking call is
invoked, and set a request callback so they are free'd when the MPI_Request
completes.

Thanks Thomas Ponweiser for reporting this

Fixes open-mpi/ompi#2151
Fixes open-mpi/ompi#1304

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-07-12 09:15:45 +09:00
Jeff Squyres
7c3aeb3061
Merge pull request #6686 from alex-anenkov/coll-iallreduce-recursivedoubling
coll/libnbc: add recursive doubling algorithm for MPI_Iallreduce
2019-06-10 10:09:51 -04:00
Mikhail Brinskii
79006f4e5a COLL/BASE: Fix linear sync all2all
Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-06-06 19:22:42 +03:00
Tomislav Janjusic
6ea920e225 Coll/hcoll: adding scatterv interface
Signed-off-by: Valentin Petrov valentinp@mellanox.com
2019-05-27 12:27:43 +03:00
Valentin Petrov
f19f6f432a Coll/hcoll: don't init opal memhooks unless explicitely requested by user
If user sets HCOLL_EXTERNAL_UCM_EVENTS=1 then we try init opal
    memory framework and register a mem release cb. Otherwise, rely on ucx.

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
2019-05-20 11:17:44 +03:00
Alex Anenkov
77d466edf3 coll/libnbc: add recursive doubling algorithm for MPI_Iallreduce
Signed-off-by: Alex Anenkov <anenkov.ru@gmail.com>
2019-05-19 18:39:11 +07:00
KAWASHIMA Takahiro
4d7bde27fb ompi/datatype: Use short float for MPI_REAL2
... and add `MPI_COMPLEX4`.

This commit changes values of existing `OMPI_DATATYPE_MPI_*` macros.
This change does not affect ABI compatibility of `libmpi.so` and the
like because these values are only used in OMPI internal code.

On the other hand, `ompi_datatype_t::id` values of existing datatypes
are not changed and 73 is newly assigned to for `MPI_COMPLEX4` to
retain ABI compatibility.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2019-02-01 13:01:10 +09:00
KAWASHIMA Takahiro
4375c11a58 ompi/datatype: Add ompi_mpi_short_float
... and `ompi_mpi_c_short_float_complex` and `ompi_mpi_cxx_sfltcplex`.

These are Open MPI internal variables intended to be defined as
`MPI_SHORT_FLOAT`, `MPI_C_SHORT_FLOAT_COMPLEX`, and
`MPI_CXX_SHORT_FLOAT_COMPLEX` in the future.

`OMPI_DATATYPE_MPI_C_SHORT_FLOAT_COMPLEX` is also required to
support `MPI_COMPLEX4` in the next commit.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2019-02-01 12:43:13 +09:00
Sergey Lebedev
829846dbcc fp16 hcoll bindings
Signed-off-by: Sergey Lebedev <sergeyle@mellanox.com>
2019-02-01 12:40:14 +09:00
KAWASHIMA Takahiro
f6b39452f6 opal/datatype: Support short float
The type `short float` is proposed for the C language in ISO/IEC JTC
1/SC 22 WG 14 (C WG) for mainly IEEE 754-2008 binary16, a.k.a.
half-precision floating point or FP16.

By this commit, `short float` and `short float _Complex` are detected
in `configure` and used in Open MPI internal code. `MPI_SHORT_FLOAT`
and its complex number version are not added yet.

This commit changes values of existing `OPAL_DATATYPE_*` macros.
This change does not affect ABI compatibility of `libmpi.so` and the
like because these values are only used in OPAL and OMPI internal code.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2019-02-01 12:40:14 +09:00
Sergey Oblomov
0759bb8561 COLL: removed FCA component
- removed FCA collectives from coll/scoll

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-01-09 16:51:40 +02:00
bosilca
96f88052e9
Merge pull request #5948 from mkurnosov/coll-ireduce-silence-coverity
coll/libnbc/ireduce: silence Coverity warning CID 1440360
2018-12-24 12:59:16 -05:00
bosilca
593db292da
Merge pull request #5644 from mkurnosov/coll-iallreduce-rabenseifner
coll/libnbc: add Rabenseifner's algorithm for MPI_Iallreduce
2018-12-24 12:58:21 -05:00
Aurelien Bouteiller
bd0d2b832e
Merge pull request #6086 from ICLDisco/export/errors_nbc
Manage errors in NBC collective ops
2018-12-21 02:34:00 -05:00
Jeff Squyres
8459d29738
Merge pull request #5979 from mkurnosov/coll-libnbc-cleanup
coll/libnbc: remove debug output
2018-11-26 18:10:10 -05:00