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annu13
cc5e1e26a5 sync with pmix master (repo_rev git69c398e) 2015-10-09 15:17:43 -07:00
Nathan Hjelm
d8dc5292ed Merge pull request #1002 from hjelmn/ompi_coverity 
ompi: fix coverity issues
 2015-10-09 12:27:41 -06:00
Jeff Squyres
f9e9b69d93 Merge pull request #1001 from igor-ivanov/master 
orte/mca/rmaps: Improve orte_rmaps_dist_device help message
 2015-10-09 14:07:47 -04:00
Raghavendra Pendyala
7579ae3086 Releasing the list items when list destructor is called 2015-10-09 10:49:44 -07:00
bosilca
1310acc83f Merge pull request #912 from bosilca/topic/coll_requests 
This patch fixes the issues identified by @ggouaillardet in the IBM tests (collectives and topologies). It also improves the memory usage of OMPI, as a communicator without collective communications will never allocate the array of requests needed to coordinate the basic collective algorithms. This ticket replaced #790.
 2015-10-09 11:27:07 -04:00
Igor Ivanov
489f27f8e9 orte/mca/rmaps: Improve orte_rmaps_dist_device help message 
See: https://github.com/open-mpi/ompi/issues/953
 2015-10-09 17:58:07 +03:00
Nathan Hjelm
4cb42f8264 ompi: fix coverity issues 
Fixes CID 715741: Logically dead code

Verified. Removed dead code.

Fixes CID 1320878: Resource leak

Free proc_list before returning.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>
 2015-10-09 08:41:27 -06:00
Ryan Grant
e019203499 Merge pull request #1000 from tkordenbrock/topic/init.osc.datatypes 
osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate
 2015-10-09 08:05:18 -06:00
Todd Kordenbrock
141b20d991 osc-portals4: Initialize datatype in MPI_Get_accumulate and MPI_Rget_accumulate 
Fix code paths that didn't convert the MPI datatype to the
corresponding Portals4 datatype.

Thanks to Nicolas Chevalier (@shawone) for finding this bug and
submitting a patch.
 2015-10-08 12:17:19 -05:00
Jeff Squyres
76dab8002d NEWS: Got @dmt4's real name: Dimitar Pashov 2015-10-08 09:45:56 -07:00
Jeff Squyres
7946d3d80f NEWS: sync one more 1.10.1 bullet 2015-10-08 09:26:43 -07:00
Gilles Gouaillardet
e946c82847 Revert "coll/basic: fix segmentation fault in neighborhood collectives if the degree" 
This partially reverts commit open-mpi/ompi@76204dfafe.
 2015-10-08 12:00:41 -04:00
Gilles Gouaillardet
99cca2cfd3 Revert "* comment on communicator creation in mca_topo_base_dist_graph_create(...)" 
This partially reverts commit open-mpi/ompi@27e4389259.
 2015-10-08 12:00:41 -04:00
George Bosilca
a8bdd8f668 Don't lose the pointer to the request array. Patch provided by 
@ggouaillardet.
 2015-10-08 12:00:41 -04:00
George Bosilca
88492a1e12 Consistently use the request array for all modules (single array stored 
in the base).
Correctly deal with persistent requests (they must be always freed when
they are stored in the request array associated with the communicator).
Always use MPI_STATUS_IGNORE for single request waiting functions.
 2015-10-08 12:00:41 -04:00
George Bosilca
01b32caf98 Update the basic module to dynamically allocate the right 
number of requests.

Remove unnecessary fields.We don't need these fields.
 2015-10-08 12:00:41 -04:00
George Bosilca
a324602174 Never allocate a temporary array for the requests. Instead rely on the 
module_data to hold one with the largest necessary size. This array is
only allocated when needed, and it is released upon communicator
destruction.
 2015-10-08 12:00:41 -04:00
Jeff Squyres
8cc39f7192 NEWS: sync with v1.10.1 bullets 2015-10-08 07:44:09 -07:00
Ryan Grant
8134ba76f1 Merge pull request #998 from tkordenbrock/topic/fix.incorrect.ompi_proc.cast 
Looks good to me.

mtl-portals4: fix bug in the Portals4 get_peer family
 2015-10-08 08:38:16 -06:00
Ryan Grant
4addab8e16 Merge pull request #997 from tkordenbrock/topic/fix.debug.msg 
coll-portals4: allreduce: remove extra %d from error message.
 2015-10-08 08:36:30 -06:00
Nathan Hjelm
90db00e37f Merge pull request #996 from hjelmn/openib_progress_thread 
btl/openib: remove extra threads
 2015-10-08 07:31:27 -06:00
Todd Kordenbrock
88d79efd9f mtl-portals4: fix bug in the Portals4 get_peer family 
The Portals4 get_peer family incorrectly cast the ompi_proc_t to
ptl_process_t and returned that as the peer.  The ptl_process_t is
actually found in the endpoint array.  This commit fixes the
Portals4 get_peer family to return the dereferenced endpoint
pointer.
 2015-10-08 07:57:48 -05:00
Todd Kordenbrock
f33b0c1cdf coll-portals4: allreduce: remove extra %d from error message. 2015-10-08 07:57:33 -05:00
Jeff Squyres
1929bb02ff Merge pull request #993 from miked-mellanox/topic/platform_patches_arg 
BUILD: add --with-platform-patches-dir=DIR
 2015-10-08 07:00:55 -05:00
rhc54
232f97a80c Merge pull request #968 from JohnWestlund/master 
simplify use of sockaddr* structs to work around buffer overflow warning
 2015-10-07 17:42:19 -07:00
Gilles Gouaillardet
d7e6daf75f configury: do not build usempif08 is PMPI is not built 
this is a revamp of commit open-mpi/ompi@2d1a8fa920
Thanks Jeff for the review !
 2015-10-08 09:04:07 +09:00
Rolf vandeVaart
fffb05be0b Merge pull request #994 from rolfv/pr/add-volatile-where-needed 
Add volatile to workaround GCC optimization bug in 4.9.2 and greater.
 2015-10-07 19:15:22 -04:00
Nathan Hjelm
b8af310efa btl/openib: remove extra threads 
This commit removes the service and async event threads from the
openib btl. Both threads are replaced by opal progress thread
support. The run_in_main function is now supported by allocating an
event and adding it to the sync event base. This ensures that the
requested function is called as part of opal_progress.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-07 12:30:41 -06:00
Rolf vandeVaart
952d01db70 Add volatile to workaround GCC optimization bug in 4.9.2 and greater. Thanks to oere for fix 2015-10-07 12:56:58 -04:00
Mike Dubman
a120fe4a14 BUILD: add --with-platform-patches-dir=DIR flag to configure 
allow to override default patch dir to arbitrary.
 2015-10-07 16:18:48 +03:00
Mike Dubman
c391df7536 Merge pull request #992 from miked-mellanox/topic/platform_patches_arg 
BUILD - patch_dir can be specified in configure
 2015-10-07 13:19:31 +03:00
Mike Dubman
eb883ae98f BUILD: allow specifying platform patch_dir from cmd line 
before:

patch_dir=$PLATFORM.patches

after

patch_dir can be specified as ./configure <....> patch_dir=/usr/local/site_ompi_v_x.y_patches/
if not specified - use default
 2015-10-07 09:31:49 +03:00
Mike Dubman
75c7e89c61 Merge pull request #991 from bureddy/master 
HCOLL: Enable alltoall interface
 2015-10-07 09:01:02 +03:00
Devendar Bureddy
72f98ccf6c HCOLL: Enable alltoall interface 2015-10-07 08:00:04 +03:00
Howard Pritchard
7c935a2206 Merge pull request #983 from hppritcha/topic/alps_odls_fix 
odls/alps: close the directory
 2015-10-06 14:12:07 -06:00
Howard Pritchard
d899320574 odls/alps: close the directory 
Close the /proc/self/fd dir after checking for open fds.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2015-10-06 11:13:44 -07:00
Nathan Hjelm
c124fd4a0b Merge pull request #977 from hjelmn/ompi_win_free 
win: free windows in ompi_win_finalize
 2015-10-06 10:11:28 -06:00
Nathan Hjelm
d7205f90f1 win: free windows in ompi_win_finalize 
This commit frees any outstanding windows at ompi_win_finalize. If
ompi_debug_show_handle_leaks is set a warning message is printed out
indicating that a window is still allocated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-06 09:25:51 -06:00
Nathan Hjelm
81757d411a Merge pull request #955 from hjelmn/mpool_update 
opal/mpool: add support for passing access flags to register
 2015-10-06 08:42:56 -06:00
annu13
5787e9248f cleaned up debug stmts 2015-10-06 06:25:36 -07:00
annu13
30ba00e05d sync with master 2015-10-06 06:04:54 -07:00
annu13
4c371ea6d7 Merge remote-tracking branch 'upstream/master' 2015-10-06 06:03:37 -07:00
Edagr Gabriel
8af80cd02c update the interfaces of the sharedfp addproc component to match the changes made in the const commit. 2015-10-06 07:54:38 -05:00
Mike Dubman
258884749e Merge pull request #976 from igor-ivanov/pr/oshmem-man.1 
oshmem: Add man.1 pages for oshmem tools
 2015-10-06 08:17:00 +03:00
Gilles Gouaillardet
de8de65b07 coll/tuned: remove unused prototypes from coll_tuned.h 2015-10-06 09:07:48 +09:00
Nathan Hjelm
59aa93e1b6 opal/mpool: add support for passing access flags to register 
This commit adds a access_flags argument to the mpool registration
function. This flag indicates what kind of access is being requested:
local write, remote read, remote write, and remote atomic. The values
of the registration access flags in the btl are tied to the new flags
in the mpool. All mpools have been updated to include the new argument
but only the grdma and udreg mpools have been updated to make use of
the access flags. In both mpools existing registrations are checked
for sufficient access before being returned. If a registration does
not contain sufficient access it is marked as invalid and a new
registration is generated.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-05 13:53:55 -06:00
Mike Dubman
260905b9f4 Merge pull request #972 from miked-mellanox/topic/master_patches_from_mlnx_platform 
Add in-finalize indicator, fca fall back to prev barrier if in-finalize
 2015-10-05 20:37:59 +03:00
Rolf vandeVaart
81346949b8 Merge pull request #975 from rolfv/pr/fix-6.0-compile-error 
Fix typo that caused compile error
 2015-10-05 13:11:35 -04:00
Nathan Hjelm
e0d9e6553f mpool: mpi_show_mpi_alloc_mem_leaks don't print out message if there are no leaks 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-10-05 10:48:56 -06:00
Rolf vandeVaart
fc83400123 Fix typo that caused compile error 2015-10-05 11:44:40 -04:00