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Граф коммитов

926 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
f5ebd2faeb Fix the Fortran issue identified by Akan Sang Loon. The dist graph
is really special as the weights can be one of the following three
values (NULL, EMPTY or some legal value). As such, we need a complex
if to correctly convert the Fortran value to the corresponding C
value. Thus, always defining the c_ array is the simplest and most
straighforward approach.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31955.
2014-06-05 17:10:48 +00:00
Jeff Squyres
6cf49a3c57 Revert r31934: that MPI_Type_f2c.3 is already in the file list.
This commit was SVN r31950.

The following SVN revision numbers were found above:
  r31934 --> open-mpi/ompi@3ed4aaea99
2014-06-04 13:58:42 +00:00
Oscar Vega-Gisbert
c7b229f03e Java - slice methods: set buffer limit to its capacity before change its position
This commit was SVN r31943.
2014-06-03 21:32:27 +00:00
Jeff Squyres
3ed4aaea99 man pages: Add MPI_Type_f2c.3 file into the tarball
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31934.
2014-06-03 18:28:50 +00:00
Jeff Squyres
87f9f6815f use-mpi-tkr: fix ierr->ierror param names
Issue noted by Walter Spector on the user's mailing list.

Throwing to Craig Rasmussen for review.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31933.
2014-06-03 15:26:02 +00:00
Gilles Gouaillardet
1a17a2a960 Fixes MEMCHECKER vs MPI_IN_PLACE in *alltoall*
cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31924.
2014-06-02 04:43:48 +00:00
Oscar Vega-Gisbert
cc219218a7 Java: update javadoc's install locations
This commit was SVN r31914.
2014-06-01 15:40:14 +00:00
Gilles Gouaillardet
40f3b849eb Fix argument checks for [i]neighbor_alltoall{v|w}
This fixes a bug introduced in :
 - r31815 (trunk) 
 - r31853 (v1.8 branch)

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31888.

The following SVN revision numbers were found above:
  r31815 --> open-mpi/ompi@8bafe06c57
  r31853 --> open-mpi/ompi@bff944d766
2014-05-23 08:19:17 +00:00
Gilles Gouaillardet
c496131eef Fixes *alltoall* collectives at top
- fix bugs
 - silent warnings

cmr=v1.8.2:ticket=4651:reviewer=bosilca

This commit was SVN r31831.

The following Trac tickets were found above:
  Ticket 4651 --> https://svn.open-mpi.org/trac/ompi/ticket/4651
2014-05-20 05:32:57 +00:00
Gilles Gouaillardet
8bafe06c57 Fixes *alltoall* collectives at top level
This commit :
 - Correctly retrieve the communicator size when
   checking memory and parameters
 - Ensure (sendtype,sendcount) and (recvtype,recvcount)
   matches and return with MPI_ERR_TRUNCATE otherwise
 - Return with MPI_SUCCESS without invoking the low level
   if no data is going to be transferred
 - Fixes trac:4506

cmr=v1.8.2:reviewer=bosilca

This commit was SVN r31815.

The following Trac tickets were found above:
  Ticket 4506 --> https://svn.open-mpi.org/trac/ompi/ticket/4506
2014-05-19 07:46:07 +00:00
George Bosilca
750c6c7861 Update the UTK copyright on the topology related files.
This commit was SVN r31805.
2014-05-16 22:23:52 +00:00
Gilles Gouaillardet
e3df77548d Fix memory leak when releasing a communicator created by
MPI_Cart_Create/MPI_Graph_create/MPI_Dist_Graph

Fixes trac:4581

This commit was SVN r31716.

The following Trac tickets were found above:
  Ticket 4581 --> https://svn.open-mpi.org/trac/ompi/ticket/4581
2014-05-13 04:49:23 +00:00
Jeff Squyres
0fac9781b3 Assume we always have fortran PROCEDURE support
Per #4590, we now ''require'' the PROCEDURE keyword support in Fortran
for the mpi_f08 module.  So if the Fortran compiler doesn't support
it, then we won't build the mpi_f08 module.

Fixes trac:4590

This commit was SVN r31588.

The following Trac tickets were found above:
  Ticket 4590 --> https://svn.open-mpi.org/trac/ompi/ticket/4590
2014-05-01 18:18:38 +00:00
Nathan Hjelm
a28012b29d Fix MPI_T issues identified by friendly users.
Several fixes:

 - I was allowing an MPI_T_cvar_handle to be created for an invalid
   variable. Fixed this by checking if the variable is valid in
   mca_base_var_get.

 - Use a better error code when the caller tries to create an unbound
   pvar handle for a bound variable.

 - Return the verbosity level in MPI_T_cvar_get_info.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31576.
2014-04-30 22:10:30 +00:00
Jeff Squyres
871e20cd4b MPI_Alltoallv.3in: fix typo
Fix minor typo reported by Xuankang Lin.

cmr=v1.8.2:reviewer=dgoodell

This commit was SVN r31525.
2014-04-24 18:14:42 +00:00
George Bosilca
17b3c7e906 Fix the issue reported by Gilles Gouaillardet regarding the
MPI_PROC_NULL persistent requests.

This commit was SVN r31524.
2014-04-24 18:07:09 +00:00
Nathan Hjelm
52f519dacb Allow MPI_MODE_NOPRECEDE | MPI_MODE_NOSUCCEED for MPI_Win_fence
This combination does not make sense but is not explicitly forbidden by
the standard so remove the argument check for this combination.

cmr=v1.8.2:reviewer=jsquyres

This commit was SVN r31523.
2014-04-24 17:36:10 +00:00
Jeff Squyres
ca80c7a9bd cart_sub.c: allow remain_dims==NULL if there is no topology on comm
Patch submitted by Gilles Gouaillardet on #4518.  Reviewed by Jeff.

Fixes trac:4518

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31517.

The following Trac tickets were found above:
  Ticket 4518 --> https://svn.open-mpi.org/trac/ompi/ticket/4518
2014-04-24 16:10:44 +00:00
Jeff Squyres
b65e7caa77 op_commutative.c: use ompi_op_is_commute(), not the expanded test
One more commit for this ticket... as pointed out by Giles, we have
ompi_op_is_commute().  We should use that instead of replicating the
logic for the test.

Refs trac:4548

This commit was SVN r31497.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 20:08:40 +00:00
Jeff Squyres
b0c4b1aa20 op_commutative.c: ...but we should check for MPI_OP_NULL
Refs trac:4548

This commit was SVN r31492.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 19:30:55 +00:00
Jeff Squyres
dba256cd6c op_commutative.c: don't check if the op is predefined or not
MPI_OP_COMMUTATIVE should work on all MPI_Op's -- regardless of
whether they are predefined or not.

Refs trac:4548.

This commit was SVN r31491.

The following Trac tickets were found above:
  Ticket 4548 --> https://svn.open-mpi.org/trac/ompi/ticket/4548
2014-04-22 19:26:15 +00:00
Oscar Vega-Gisbert
296bc56241 Java: apply a patch which solves the ticket #4313
This commit was SVN r31470.
2014-04-21 21:44:25 +00:00
George Bosilca
399c8b18d2 Fix a parameter check. Thanks Lisandro Dalcin for the bug report.
More info @ http://www.open-mpi.org/community/lists/devel/2014/04/14561.php

cmr=v1.8.2:reviewer=ompi-rm1.8

This commit was SVN r31467.
2014-04-21 17:00:56 +00:00
Jeff Squyres
10e2137b97 mpi_f08 fixes from Craig's review:
* Superfluous use of MPI_User_function in comm_create_keyval_f08.F90
* Missed adding "value" keyword to function pointer arguments in pmpi
  C interfaces

Submitted by Craig, reviewed by Jeff.

Refs trac:4512

This commit was SVN r31455.

The following Trac tickets were found above:
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-19 12:06:24 +00:00
Oscar Vega-Gisbert
f1133e2520 Java: initialize free list to only 2 buffers
This commit was SVN r31454.
2014-04-19 12:03:52 +00:00
Oscar Vega-Gisbert
19803d6605 Java - neighborhood collective communication: get buffers according topology information
This commit was SVN r31452.
2014-04-19 11:12:38 +00:00
Jeff Squyres
ae43ae4d17 MPI_Type_indexed.3in: fix array_of_displacements type
This man page contains the prototype and descriptions for both
MPI_TYPE_INDEXED and MPI_TYPE_CREATE_HINDEXED.  Bastian Beischer
noticed that the type of the array_of_displacements argument in the
MPI_TYPE_CREATE_HINDEXED was wrong.

Also, a minor update to MPI_Type_hindexed.3in: indicate that the C
type is MPI_Aint and the Fortran type is INTEGER (which is why this
function was deprecated and then deleted by the MPI Forum!).

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31411.
2014-04-16 15:25:37 +00:00
Oscar Vega-Gisbert
5a21790caa Java: improve access to Java arrays.
This commit was SVN r31391.
2014-04-14 21:29:13 +00:00
Jeff Squyres
c0f3d80c98 Change this filename back (i.e., revert r31375).
It's a singular filename because there's only 1 interface in the
file.  Also, r31375 missed updating the name in a few places, and
broke the build for compilers that supported the mpi_f08 interface.

This commit was SVN r31389.

The following SVN revision numbers were found above:
  r31375 --> open-mpi/ompi@fe1935de14
2014-04-14 19:51:06 +00:00
Ralph Castain
fe1935de14 Rename file to match pattern used in other names and in Makefile.am
Don't know if this needs to go to 1.8.1, but will cmr it and leave for Jeff to decide

cmr=v1.8.1:reviewer=jsquyres

This commit was SVN r31375.
2014-04-12 14:43:20 +00:00
Jeff Squyres
ed32143dc5 fortran: remove warning that compiling the "mpi" module takes a long time
Since we only builds the "small" size of the "mpi" module any more, it
does not take a long time to compile.  So remove the warning that is
emitted.

Also remove a vestage of Windows support that was leftover in the
Fortran area (i.e., building mpi.obj).

This commit was SVN r31374.
2014-04-11 21:06:43 +00:00
Jeff Squyres
5551e78275 fortran: Separate pre-defined attribute and conversion interfaces
Differentiate the pre-defined attribute and conversion interfaces into
those with INTEGER handles and those with TYPE(MPI_*) handles.

Refs trac:4157

cmr=v1.8.1:ticket=trac:4512

This commit was SVN r31372.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
  Ticket 4512 --> https://svn.open-mpi.org/trac/ompi/ticket/4512
2014-04-11 21:01:16 +00:00
Jeff Squyres
65b95e2844 mpi_f08: pass function pointers from Fortran to C properly
Use type(c_funptr) to "cast" the fortran function pointers to
arbitrary C pointers.  In C, we then pick up the appropriate function
pointer type.

Tested with ifort 14.0.2 and gfortran 4.9 snapshot (which is what
identified that the previous method of passing function pointers was
not Fortran'08-compliant).

Refs trac:4157

This commit was SVN r31371.

The following Trac tickets were found above:
  Ticket 4157 --> https://svn.open-mpi.org/trac/ompi/ticket/4157
2014-04-11 20:56:11 +00:00
Jeff Squyres
12e82daa78 mpi_f08: Fix param name and string length for MPI_GET_LIBRARY_VERSION
Junchao Zhang pointed out to me that we had the wrong parameter name
and string length specification for the "version" parameter.  This
matters because Fortran allows passing by parameter name
(vs. parameter ordering).  Specifically, we had the interface as:

{{{
subroutine MPI_Get_library_version_f08(name,resultlen,ierror)
   character(len=MPI_MAX_PROCESSOR_NAME), intent(out) :: name
...etc.
}}}

but it should be:

{{{
subroutine MPI_Get_library_version_f08(version,resultlen,ierror)
   character(len=MPI_MAX_LIBRARY_VERSION_STRING), intent(out) :: version
...etc.
}}}

Thankfully, MPI_MAX_PROCESSOR_NAME and MPI_MAX_LIBRARY_VERSION_STRING
are both 255 in OMPI, so there's no ABI issue caused by changing the
length from MMPN --> MMLVS.

The ABI is also unaffected by the parameter name change: if you
compile/link an MPI application calling MPI_GET_LIBRARY_VERSION with
1.8, it'll still run-time link with this change.

However, if an MPI program compiled using parameter name passing with
the old/incorrect parameter name ("name"), it won't be able to compile
with the new/correct parameter name ("version").  But this will only
happen for an incorrect MPI application (because the MPI-3 mandated
parameter name is "version", not "name"), so they deserve what they
get.

cmr=v1.8.1:reviewer=dgoodell

This commit was SVN r31365.
2014-04-10 14:45:36 +00:00
George Bosilca
95a4f219ea This commit fixes some of the Coverity reported warnings. I addressed
some of the collective modules, the shared memory and the profiling
interface. I left out VT, dynamic fcoll and seq rmaps.

cmr=v1.8.1:reviewer=jsquyres:subject=silence Coverity reported warnings

This commit was SVN r31309.
2014-04-06 18:23:49 +00:00
Oscar Vega-Gisbert
f133b6b693 Java: move buffer methods from Comm.c to MPI.c
This commit was SVN r31303.
2014-04-01 21:34:51 +00:00
Oscar Vega-Gisbert
3be348e34a Java: create an MCA parameter: ompi_mpi_java_eager
This commit was SVN r31301.
2014-04-01 20:57:12 +00:00
Oscar Vega-Gisbert
3ef08328e7 Java - Info, Datatype: it is recommended to use dup() instead of clone()
This commit was SVN r31300.
2014-03-31 21:30:23 +00:00
Oscar Vega-Gisbert
aa3e2f7afd New Java method in Comm: iDup
This commit was SVN r31299.
2014-03-31 21:15:26 +00:00
Oscar Vega-Gisbert
c9e6f09af1 Java: neighborhood collective communications
This commit was SVN r31296.
2014-03-30 19:55:56 +00:00
Oscar Vega-Gisbert
a1004bf5cd Java: remove useless native datatype initialization
This commit was SVN r31293.
2014-03-29 19:08:39 +00:00
Oscar Vega-Gisbert
0e177597c3 Java: Comm.set/getInfo
This commit was SVN r31289.
2014-03-29 18:57:51 +00:00
Oscar Vega-Gisbert
845818de59 Avoid use Status member in Request.
This commit was SVN r31287.
2014-03-29 18:13:38 +00:00
Jeff Squyres
173c046617 build: add Automake-like silent/verbose macros for "ln -s ..." operations
Also, since I put some of the macros for these silent/verbose rules up
in the top-level Makefile.man-page-rules file, I renamed it to
Makefile.ompi-rules.

I've had this sitting around for a while; now seems like as good a
time as any to commit it.

This commit was SVN r31271.
2014-03-28 18:24:32 +00:00
Nathan Hjelm
595a6e94e6 Fix typos in r31260
Also added some missing values and sentinels.

cmr=v1.8:ticket=trac:4470

This commit was SVN r31263.

The following SVN revision numbers were found above:
  r31260 --> open-mpi/ompi@69036437b7

The following Trac tickets were found above:
  Ticket 4470 --> https://svn.open-mpi.org/trac/ompi/ticket/4470
2014-03-27 22:34:28 +00:00
Jeff Squyres
24f7bd327e MPI-3: Add missing MPI_Comm_get|set_info functions
Thanks to Lisandro Dalcin for pointing out the issue.

cmr=v1.8:reviewer=hjelmn

This commit was SVN r31262.
2014-03-27 21:41:59 +00:00
Nathan Hjelm
69036437b7 Add missing MPI_WEIGHTS_EMPTY constant
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31260.
2014-03-27 20:59:52 +00:00
Nathan Hjelm
545d5daced osc: add missing MPI_ERR_RMA_SHARED error code and internal equivalent
cmr=v1.8:reviewer=jsquyres

This commit was SVN r31259.
2014-03-27 20:06:43 +00:00
Oscar Vega-Gisbert
cc511d0efc Avoid use Status member in Comm, Message and File.
This commit was SVN r31198.
2014-03-24 22:28:30 +00:00
Jeff Squyres
24020ef1e3 Refs trac:4372: 3rd and hopefully final addendum to Fortran API fixes for the RMA functions
These parameters should not be marked as INTENT(OUT) (they aren't in
the MPI-3 standard).

This commit was SVN r31056.

The following Trac tickets were found above:
  Ticket 4372 --> https://svn.open-mpi.org/trac/ompi/ticket/4372
2014-03-12 22:55:57 +00:00