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22483 Коммитов

Автор SHA1 Сообщение Дата
Brice Goglin
fff1bb5dcd hwloc: core: reorder children in merge_useless_child() as well
When ignore_keep_structure is enabled, intermediate level can disappear
between parent and child, making the new child complete_cpuset smaller,
causing the child list to require a reorder just like in remove_ignored().

(cherry picked from commit open-mpi/hwloc@88afbe6b62)

Embed this related commit:
core: abstract out reorder_children(), needed when merging modifies the list of children
(cherry picked from commit open-mpi/hwloc@14db82d391)

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:16 -07:00
Brice Goglin
77978a846e hwloc: core: fix the merging of identical objects in presence of Misc objects
If object A contains B + I/O as children, we can "ignore" I/Os and still
try to merge A and B. We now do the same for Misc objects without cpusets
instead of I/Os.

This fixes a corner case when export/reimport to XML creates a slightly
different topology (making hwloc_insert_misc fail inside a Linux cgroup).

Thanks to Dave Love for reporting the problem.

Fixes #118

(cherry picked from commit open-mpi/hwloc@650371e115)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
5427b33caf hwloc: debug: fix an overzealous assertion about the parent cpuset vs its children
When I/O are attached under a PU, removing the children's cpusets from
the parent cpuset doesn't give 0, it gives the PU cpuset.
The assertion fails on single-pu machines with I/O when --merge is given,
only one PU remains with I/O under it.

But if we insert Misc by cpuset under PU, it gives 0 as expected.

Fix the assertion accordingly.

Thanks to Thomas Van Doren for reporting the issue.

(cherry picked from commit open-mpi/hwloc@45c94c336d)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
9b59d532fc hwloc: cpuid-x86: Fix duplicate asm labels in case of heavy inlining on x86-32
hwloc_x86_discover() calls hwloc_look_x86() twice, which calls hwloc_have_x86_cpuid().
If everything gets inlined, the asm label inside hwloc_have_x86_cpuid()
is duplicated.
Use a local label with f annotation in jumps to avoid the problem.

Thanks to Thomas Van Doren for reporting the issue (found with gcc -m32).

(cherry picked from commit open-mpi/hwloc@50e447f5bc)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
86a536ca58 hwloc: x86 and OSF: Don't forget to set NUMA node nodeset
x86: Not critical since BSDs that use this backend have no membind support,
but better fix it for uniformization.
(cherry picked from commit open-mpi/hwloc@a431361c7d)

OSF: Looks like nobody ever tried to play with memory binding on OSF/Tru64.
(cherry picked from commit open-mpi/hwloc@2d6c73356d)

Conflicts:
	NEWS

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
db5bc72496 hwloc: API: clearly state that os_index isn't unique while logical_index is
(cherry picked from commit open-mpi/hwloc@6c75302ab2)

Conflicts:
	opal/mca/hwloc/hwloc191/hwloc/include/hwloc.h

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:14:15 -07:00
Brice Goglin
a636790604 hwloc: opal/mca/hwloc/hwloc191/hwloc/NEWS update
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
7c96aecfaf hwloc: errors: improve the advice to send hwloc-gather-topology files in the OS error message
(cherry picked from commit open-mpi/hwloc@f77aa01b3c)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:41 -07:00
Brice Goglin
d5f8c89527 hwloc: configure: fix the check for X11/Xutil.h
At least some solaris enforce the need to #include X11/Xlib.h first.

Thanks to Siegmar Gross for reporting the issue.

(cherry picked from commit open-mpi/hwloc@005a7e89b6)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:13:01 -07:00
Brice Goglin
50b035dddb hwloc: misc.h: Fix hwloc_strncasecmp() with some icc
tolower needs <ctype.h>

Thanks to Ralph Castain for reporting the failure.

(cherry picked from commit open-mpi/hwloc@038c372a58)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:57 -07:00
Brice Goglin
6764413aa3 hwloc: misc.h: Fix hwloc_strncasecmp() build under strict flags on BSD
strncasecmp() needs <strings.h>

Thanks to Pavan Balaji for reporting the failure.

(cherry picked from commit open-mpi/hwloc@37439c4801)
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:10:46 -07:00
Brice Goglin
6b0011f138 hwloc: v1.9.1 released, doing 1.9.2rc1 now
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2015-03-27 05:06:15 -07:00
Jeff Squyres
a85edb8ad4 libfabric: update to Github libfabric 0d7daf720f04 2015-03-26 14:40:46 -07:00
Jeff Squyres
7f3aab9cfa opal_get_version.m4sh: remove stale code
Since getting the git version is very fast (vs. "svnversion"), we
aren't using the opal_ver_need_repo_rev var any more.  So remove this
stale code.
2015-03-26 14:38:17 -07:00
Jeff Squyres
ee70473c48 README: Remove stale SVN/HG reference 2015-03-26 14:38:17 -07:00
Elena
90f5b2bb84 Introduce -tune command line option to set env vars and mca params from file 2015-03-26 18:33:53 +02:00
Jeff Squyres
f61d1db1b3 openmpi-nightly-coverity.pl: bring updates from PMIx
We just enabled Coverity builds for the PMIx project; bring over the
improvements from the PMIx nightly coverity script to this script.
2015-03-26 11:19:14 -04:00
Jeff Squyres
71aae38540 opal_setup_cc.m4: add comment with the specific warning
Also collapse a grep/test into a single statement.
2015-03-26 04:13:53 -07:00
rhc54
2ff7575dde Merge pull request #497 from rhc54/topic/sec
Allow for different security domains.
2015-03-25 21:01:29 -07:00
Ralph Castain
6aa33deafb Remove debug 2015-03-25 19:58:51 -07:00
Ralph Castain
47b4ce3ed4 Merge branch 'master' of ssh://github.com/open-mpi/ompi 2015-03-25 19:57:12 -07:00
Ralph Castain
10cf455080 Tools need to use the TCP OOB component 2015-03-25 19:56:49 -07:00
Nathan Hjelm
8b81d9b373 Merge pull request #496 from hjelmn/asm_fix
asm/ia32: do not use the = constraint modifier for input/output operands
2015-03-25 14:51:57 -06:00
Ralph Castain
1b24536941 Allow for different security domains. Let the initiator of the connection determine the method to be used - if the receiver cannot support it, then that's an error that will cause the connection attempt to fail. 2015-03-25 13:22:01 -07:00
Nathan Hjelm
26f96c0049 asm/ia32: do not use the = constraint modifier for input/output
operands

Also added support for the xchg instruction. The instruction is
supported by ia32 and may benefit vader.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-25 13:42:27 -06:00
Jeff Squyres
a50f103c0f opal_setup_cc.m4: don't use -finline-functions with clang
Some versions of clang (at least >= 3.5 -- perhaps older versions,
too?) will *warn* about -finline-functions, but still allow it.  This
is very annoying, so check for that warning, too.
2015-03-25 10:31:51 -07:00
Devendar Bureddy
71c28cea65 HCOLL: hcoll dte fixes
- hcoll currently do not support datatype with gaps around it (i.e dtsize !=
dtextent)
    - check for user defined Ops.
2015-03-25 16:04:11 +02:00
Ralph Castain
6ba76ed8d8 Per user request, we allow -host to specify a host that is not included in a hostfile (however, we reject it if we were given an allocation by a resource manager). Since we cannot know if an IP addr form references the same node that was previously given as a string name, we have no choice but to assume they are different. Get the topology from the right place in that situation so mpirun can succeed. 2015-03-25 06:16:01 -07:00
Ralph Castain
9dbc69df0f Stop an ugly infinite loop caused by continual re-opening of the opal if framework. 2015-03-24 17:50:14 -07:00
Rolf vandeVaart
dfb7e00ef5 Make sure context is still around when doing some other cleanup 2015-03-24 16:47:40 -04:00
Nathan Hjelm
88072f9b8b ompi/datatype: fix subarray datatype
The subarray datatype was not packing/unpacking correctly. This was
leading to wrong results whenever the lb of the subarray datatype was
non-zero.

I tracked the issue to the use of ompi_datatype_create_resized. This
function simply duplicates the old datatype and sets the lb and
extent. This is unfortunately insufficent for the pack/unpack
functions which use the loop end first element offset NOT the lb. This
offset is 0 in the resized datatype. Once ompi_datatype_create_resized
has been fixed this commit should be reverted.

Fixes #380.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-24 14:33:10 -06:00
Nathan Hjelm
f588ad7af0 Merge pull request #485 from hjelmn/info_enums
ompi/info: add support for getting info key value based on variable enumerator
2015-03-23 11:43:22 -06:00
Nathan Hjelm
9299cd5cd7 ompi/info: add support for getting info key value based on variable
enumerator

This commit adds a function that will return an integer value for an
info key based on the value returned by a variable enumerator. This
feature should greatly simplify code using the info keys (osc for
example).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-03-23 11:20:37 -06:00
Howard Pritchard
33df436633 Merge pull request #483 from hppritcha/topic/mtl_psm_coverity_fixes
mtl/psm: coverity fixes
2015-03-22 13:08:17 -06:00
rhc54
df24816d64 Merge pull request #488 from lrrajesh/master
Notification msg add severity to the message header.
2015-03-20 09:45:46 -07:00
Ralph Castain
095a8fa684 We don't need to know about non-fatal errors from setting socket options 2015-03-20 07:16:31 -07:00
Ralph Castain
a013f3059f For scalability reasons, and to make life easier for the poor Cray-ites, don't bang on the system for the username - we'll just use the uid. 2015-03-19 21:24:13 -07:00
Howard Pritchard
990e9b47e0 Merge pull request #486 from hppritcha/topic/issue_484
orte/oob: implement alps oob component
2015-03-19 19:40:40 -06:00
Ralph Castain
ed5d10b816 Somehow slipped by - ensure we correctly count the cores 2015-03-19 17:56:18 -07:00
Ralph Castain
43a3baad5e Ensure we use the first compute node's topology for mapping
Don't filter the topology by cpuset if you are mpirun until you know that no other compute nodes are involved. This deals with the corner case where mpirun is executing on a node of different topology from the compute nodes.

Simplify - don't mandate that all cpus in the given cpuset be present on every node. We can then run everything thru the filter as before, which ensures that any procs run on mpirun are also contained within the specified cpuset.

Correctly count the number of available PUs under each object when given a cpuset

Fix the default binding settings, and correctly count PUs when no cpuset is given

Ensure the binding policy gets set in all cases
2015-03-19 16:30:36 -07:00
Howard Pritchard
6054975913 oob/alps: add configure file for alps oob
Have to have alps rpms installed on a system
for alps component to build, even if separated
by a level of indirection.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-19 15:38:14 -07:00
Howard Pritchard
b1f31a4364 orte/oob: implement alps oob component
Implement an almost-do-nothing alps oob component.
When using aprun to launch a job on Cray system,
there is no reason to need an oob system, since ompi
relies on Cray PMI for oob communication.

Fixes #484
2015-03-19 14:11:40 -07:00
lrrajesh
4dc75687e2 Notification msg add severity to the output 2015-03-18 13:55:03 -07:00
Howard Pritchard
edf9e8ba8f mtl/psm: coverity fixes
Fix CIDS 1270176 - 1270179

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2015-03-18 11:02:01 -06:00
Nathan Hjelm
ccba8ce856 Merge pull request #457 from hjelmn/mpit_fixes
mca/base: fix bugs in framework deregistration/re-registration
2015-03-18 08:37:49 -06:00
Mike Dubman
c68a0ba99b Merge pull request #482 from nkogteva/master
grpcomm: fixed brks and rcd algorithms - added enough space for masks in...
2015-03-18 16:09:59 +02:00
Nadezhda Kogteva
7c25b4cea6 grpcomm: fixed brks and rcd algorithms - added enough space for masks in order to get them working in the large scale. 2015-03-18 14:33:04 +02:00
Ralph Castain
50277fec76 Adjust MCA param 2015-03-17 19:46:31 -07:00
rhc54
b41d2ad6c4 Merge pull request #481 from rhc54/topic/slurm
Add new MCA parameter to support edge case with debugger at LLNL
2015-03-17 07:40:55 -07:00
rhc54
7f8fcb7fb7 Merge pull request #479 from rhc54/topic/rarp
Attempt to reduce the RARP traffic during definition of allocations
2015-03-17 07:40:35 -07:00