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Ralph Castain
13665bffe8 Per an off-list discussion, it appears possible for a system to report failure when executing getpwuid. There are several reasons for this error to occur, most notably if the system uses a network-based authentication protocol (e.g., NIS) and that sytem gets overwhelmed when we launch on a lot of nodes.
There is no good way to recover from this scenario, and from past experience, using the user's name in the session directory (as opposed to the uid) is very helpful when things go wrong. So print a help message when this happens (it is extremely rare, but has happened at least once now) and return an error.

cmr:v1.7.3,reviewer=jsquyres
cmr:v1.6.5,reviewer=jsquyres

This commit was SVN r28658.
2013-06-20 04:30:42 +00:00
Jeff Squyres
089c632cce Remove a bunch of dead code: gcc 4.7 warns of set-but-unused
variables.  So get rid of them.

This commit was SVN r28538.
2013-05-17 21:45:49 +00:00
Ralph Castain
93ba4247f8 remove extra paren when --without-hwloc
This commit was SVN r28530.
2013-05-15 21:31:45 +00:00
Ralph Castain
5296099ecb Fix the cpus-per-rank when binding to hwthreads. Add cpus-per-rank to diag printout
Thanks to Elena for reporting the problem

This commit was SVN r28508.
2013-05-14 20:17:50 +00:00
Ralph Castain
27e3e382d5 No need for ORTE tools to use orte progress thread
This commit was SVN r28445.
2013-05-04 21:13:20 +00:00
Nathan Hjelm
bccf8c657a Per RFC add initial support for the MPI 3.0 tools interface.
Current MPI_T support:
  - Full cvar interface.
  - Full categories interface.
  - No pvar support at this time.

This commit was SVN r28376.
2013-04-24 15:59:23 +00:00
Ralph Castain
45af6cf59e The move of the orte_db framework to opal required that we create an opaque opal_identifier_t type as OPAL cannot know anything about the ORTE process name. However, passing a value down to opal and then having the db components reference it causes alignment issues on Solaris Sparc platforms. So pass the pointer instead and do the old "memcpy" trick to avoid the problem.
This commit was SVN r28308.
2013-04-08 23:34:16 +00:00
Ralph Castain
1b5b9afa85 Silence warnings
This commit was SVN r28244.
2013-03-27 21:56:46 +00:00
Nathan Hjelm
9d4a26f47d Update OMPI frameworks to use the MCA framework system.
Notes:
  - This commit also eliminates the need for an available components list in use
    in several frameworks. None of the code in question was making use of the
    priority field of the priority component list item so these extra lists were
    removed.
  - Cleaned up selection code in several frameworks to sort lists using opal_list_sort.
  - Cleans up the ompi/orte-info functions. Expose the functions that construct the
    list of params so they can be used elsewhere.

patches for mtl/portals4 from brian

missed a few output variables in openib

This commit was SVN r28241.
2013-03-27 21:17:31 +00:00
Nathan Hjelm
c041156f60 Update ORTE frameworks to use the MCA framework system.
This commit was SVN r28240.
2013-03-27 21:14:43 +00:00
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
317915225c Finish the binding cleanup by removing the no-longer-used binding level scheme. This proved to be fallible as there is no guarantee that the hierarchy it used matched physical reality of the machine (e.g., is L3 "above" the socket or not). Still have to complete the ppr update, but get the rest of it correct.
This commit was SVN r28223.
2013-03-26 20:09:49 +00:00
Ralph Castain
6ee32767d4 Restore the cpus-per-proc option for byslot and bynode mapping. Remove the bind_idx (which recorded the index of the hwloc object where the proc was bound) as this would no longer be unique, and just use the bitmap as the standard reference for location. Update the relative locality computation to take bitmaps as its argument.
This commit was SVN r28219.
2013-03-26 18:27:50 +00:00
Ralph Castain
147c6ff9e7 Clean out the cruft leftover from the use_common_ports experiment
cmr:v1.7

This commit was SVN r28184.
2013-03-20 15:07:43 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes
This commit was SVN r28134.
2013-02-28 01:35:55 +00:00
Ralph Castain
bd9265c560 Per the meeting on moving the BTLs to OPAL, move the ORTE database "db" framework to OPAL so the relocated BTLs can access it. Because the data is indexed by process, this requires that we define a new "opal_identifier_t" that corresponds to the orte_process_name_t struct. In order to support multiple run-times, this is defined in opal/mca/db/db_types.h as a uint64_t without identifying the meaning of any part of that data.
A few changes were required to support this move:

1. the PMI component used to identify rte-related data (e.g., host name, bind level) and package them as a unit to reduce the number of PMI keys. This code was moved up to the ORTE layer as the OPAL layer has no understanding of these concepts. In addition, the component locally stored data based on process jobid/vpid - this could no longer be supported (see below for the solution).

2. the hash component was updated to use the new opal_identifier_t instead of orte_process_name_t as its index for storing data in the hash tables. Previously, we did a hash on the vpid and stored the data in a 32-bit hash table. In the revised system, we don't see a separate "vpid" field - we only have a 64-bit opaque value. The orte_process_name_t hash turned out to do nothing useful, so we now store the data in a 64-bit hash table. Preliminary tests didn't show any identifiable change in behavior or performance, but we'll have to see if a move back to the 32-bit table is required at some later time.

3. the db framework was a "select one" system. However, since the PMI component could no longer use its internal storage system, the framework has now been changed to a "select many" mode of operation. This allows the hash component to handle all internal storage, while the PMI component only handles pushing/pulling things from the PMI system. This was something we had planned for some time - when fetching data, we first check internal storage to see if we already have it, and then automatically go to the global system to look for it if we don't. Accordingly, the framework was provided with a custom query function used during "select" that lets you seperately specify the "store" and "fetch" ordering.

4. the ORTE grpcomm and ess/pmi components, and the nidmap code,  were updated to work with the new db framework and to specify internal/global storage options.

No changes were made to the MPI layer, except for modifying the ORTE component of the OMPI/rte framework to support the new db framework.

This commit was SVN r28112.
2013-02-26 17:50:04 +00:00
Ralph Castain
c0b670bea8 I guess some profiling tools and debuggers require that the argv[0] of each rank be unique so they can create a filename based on that value. For those obscure cases, provide an mpirun cmd line option that indexes each argv[0] by rank
This commit was SVN r28064.
2013-02-15 20:20:49 +00:00
Ralph Castain
a591fbf06f Add initial support for dynamic allocations. At this time, only Slurm supports the new capability, which will be included in an upcoming release.
Add hooks for supporting dynamic allocation and deallocation to support application-driven requests and fault recovery operations.

This commit was SVN r27879.
2013-01-20 00:33:42 +00:00
Ralph Castain
c96cc2d5a0 In order to properly connect to debuggers like STAT, we need to get the hostname in its unstripped version for the MPIR_proctab. Unfortunately, we need a stripped version for Cray's alps launcher. So when we are stripping the hostname prefix, retain alias hostnames and add the ability to specify an alias to use in the proctab.
This commit was SVN r27863.
2013-01-18 05:00:05 +00:00
Ralph Castain
97ee683275 Track parentage of procs
This commit was SVN r27758.
2013-01-08 04:41:12 +00:00
Nathan Hjelm
6a9ab9b221 Change orte_startup_timeout to be in seconds and remove the 10 second maximum
This commit was SVN r27741.
2013-01-03 23:56:34 +00:00
Ralph Castain
81a8e21939 Need to have the event thread running during init/finalize, but we still have a problem with cleanup - so comment out the event_base_free for now.
This commit was SVN r27738.
2013-01-03 02:16:57 +00:00
Ralph Castain
64da742d5f Remove the orte_finalize_event variable - no longer needed
This commit was SVN r27722.
2012-12-25 19:33:20 +00:00
Ralph Castain
cada035f38 Fix the segfault problem in the orteds - turns out it only occurred with progress threads enabled. Ensure the thread gets started at the right time (at the end of init), although the event base gets created earlier. Remove the finalize event as we can instead use the loopbreak call to exit the event loop.
This commit was SVN r27721.
2012-12-25 19:30:18 +00:00
Ralph Castain
c8e34813b6 THIS IS A TEMPORARY FIX - do not finalize opal as the parameter system has been broken and will segfault when finalized.
THIS PATCH MUST BE REMOVED WHEN THE PARAMETER SYSTEM HAS BEEN FIXED.

This commit was SVN r27720.
2012-12-24 18:42:19 +00:00
Ralph Castain
e11f32038a Add an MCA param to retain all aliases based on IP addrs for node names so that procs can look them up by interface, if desired. If the param is set, pass aliases around to all daemons and procs for local use
This commit was SVN r27619.
2012-11-16 04:04:29 +00:00
Ralph Castain
da6428a822 Add an MCA param to help debug the ORTE progress thread
This commit was SVN r27614.
2012-11-15 15:54:38 +00:00
Ralph Castain
5241925b62 Add the dfs to ompi_info
This commit was SVN r27613.
2012-11-15 15:54:07 +00:00
Ralph Castain
fefec03e78 Enable all ORTE tools to use progress threads if they are enabled
This commit was SVN r27593.
2012-11-12 02:54:09 +00:00
Ralph Castain
bd887f7f56 Add a new "test" component to the DFS that treats all files as remote in order to test the app-to-daemon interactions on a single machine. Set a global param to indicate we are using staged execution. Add a param to indicate it is okay for non-MPI processes to execute without finalizing. Cleanup file map load and fetch operations.
This commit was SVN r27587.
2012-11-10 14:09:12 +00:00
Nathan Hjelm
a754674fd7 Per the specification for putenv (http://pubs.opengroup.org/onlinepubs/009604599/functions/putenv.html) the string given to putenv becomes part of the environment. The string must not be changed or freed.
cmr:v1.7

This commit was SVN r27578.
2012-11-09 16:33:14 +00:00
Ralph Castain
3812979315 Remove stale file - we removed the size functions awhile back
This commit was SVN r27551.
2012-11-01 03:36:51 +00:00
Ralph Castain
a080de188f Enable orterun to directly support staged execution, treating each app as a separate job. Support transfer of file maps when support exists.
This commit was SVN r27516.
2012-10-29 23:11:30 +00:00
Ralph Castain
4e52a15e70 Provide for sync on seek and close DFS operations. Eliminate an unnecessary wake-up timer when using ORTE progress thread
This commit was SVN r27500.
2012-10-26 15:49:04 +00:00
Ralph Castain
35e5e5b512 Set the orte_event_base to the opal_event_base in ompi_info - we aren't doing anything with progress threads anyway
This commit was SVN r27488.
2012-10-25 22:36:08 +00:00
Ralph Castain
79e36413c2 There was some discussion of this at an earlier time, but we never got around to doing it - so make orte behave more like a regular library, counting the number of times init is called, and executing finalize when all those are exhausted.
This commit was SVN r27484.
2012-10-25 18:39:37 +00:00
Ralph Castain
4028ce7a5d Silence warnings by making types match
This commit was SVN r27446.
2012-10-14 03:45:28 +00:00
Ralph Castain
285a3b168d Add an ability to specify the max number of simultaneous procs/node for an application when operating in staged mode. Change some debug statements from OPAL_OUTPUT_VERBOSE to opal_output_verbose so they are available in optimized builds.
This commit was SVN r27445.
2012-10-14 03:31:32 +00:00
Jeff Squyres
fb2e543a57 Refs trac:3275.
We ran into a case where the OMPI SVN trunk grew a new acceptable MCA
parameter value, but this new value was not accepted on the v1.6
branch (hwloc_base_mem_bind_failure_action -- on the trunk it accepts
the value "silent", but on the older v1.6 branch, it doesn't).  If you
set "hwloc_base_mem_bind_failure_action=silent" in the default MCA
params file and then accidentally ran with the v1.6 branch, every OMPI
executable (including ompi_info) just failed because hwloc_base_open()
would say "hey, 'silent' is not a valid value for
hwloc_base_mem_bind_failure_action!".  Kaboom.

The only problem is that it didn't give you any indication of where
this value was being set.  Quite maddening, from a user perspective.

So we changed the ompi_info handles this case.  If any framework open
function return OMPI_ERR_BAD_PARAM (either because its base MCA params
got a bad value or because one of its component register/open
functions return OMPI_ERR_BAD_PARAM), ompi_info will stop, print out
a warning that it received and error, and then dump out the parameters
that it has received so far in the framework that had a problem.

At a minimum, this will show the user the MCA param that had an error
(it's usually the last one), and ''where it was set from'' (so that
they can go fix it).  

We updated ompi_info to check for O???_ERR_BAD_PARAM from each from
the framework opens.  Also updated the doxygen docs in mca.h for this
O???_BAD_PARAM behavior.  And we noticed that mca.h had MCA_SUCCESS
and MCA_ERR_??? codes.  Why?  I think we used them in exactly one
place in the code base (mca_base_components_open.c).  So we deleted
those and just used the normal OPAL_* codes instead.

While we were doing this, we also cleaned up a little memory
management during ompi_info/orte-info/opal-info finalization.
Valgrind still reports a truckload of memory still in use at ompi_info
termination, but they mostly look to be components not freeing
memory/resources properly (and outside the scope of this fix).

This commit was SVN r27306.

The following Trac tickets were found above:
  Ticket 3275 --> https://svn.open-mpi.org/trac/ompi/ticket/3275
2012-09-11 20:47:24 +00:00
Ralph Castain
a0ffeb205a Add an orted component for staged operations and rename the staged component to "staged_hnp".
This commit was SVN r27305.
2012-09-11 20:35:46 +00:00
Ralph Castain
d772e0fc3d Add an option to treat dash-host specifications as "requested, but not required". So-called "soft" location requests can allow an application to execute even if the ideal allocation isn't available.
This commit was SVN r27242.
2012-09-05 18:42:09 +00:00
Ralph Castain
fde83a44ab This confusion has been around for awhile, caused by a long-ago decision to track slots allocated to a specific job as opposed to allocated to the overall mpirun instance. We eliminated that quite a while ago, but never consolidated the "slots_alloc" and "slots" fields in orte_node_t. As a result, confusion has grown in the code base as to which field to look at and/or update.
So (finally) consolidate these two fields into one "slots" field. Add a field in orte_job_t to indicate when all the procs for a job will be launched together, so that staged operations can know when MPI operations are allowed.

This commit was SVN r27239.
2012-09-05 01:30:39 +00:00
Ralph Castain
bae5dab916 If (and only if) a user requests, set the default number of slots on any node to the number of objects of the specified type. This *only* takes effect in an unmanaged environment - i.e., if an external resource manager assigns us a number of slots, then that is what we use. However, if we are using a hostfile, then the user may or may not have given us a value for the number of slots on each node.
For those nodes (and *only* those nodes) where the user does *not* specify a slot count, we will set the number of slots according to their direction: either to the number of cores, numas, sockets, or hwthreads. Otherwise, the slot count is set to 1.

Note that the default behavior remains unchanged: in the absence of any value for #slots, and in the absence of any directive to set #slots, we will set #slots=1.

This commit was SVN r27236.
2012-09-04 20:58:26 +00:00
Ralph Castain
11de735e8a Complete the revamp of hostfile support in non-managed environments. Working at the app level, ensure that we utilize only those nodes specified for that app, but fall back to the default hostfile (if available) for those with no specification, further falling back to the local host if the default hostfile is not present or is empty.
This commit was SVN r27230.
2012-09-04 16:34:05 +00:00
Ralph Castain
1b659de132 Get staged execution working on multi-node setups. Improve efficiency by only remapping if all procs not yet mapped in the job.
This commit was SVN r27181.
2012-08-29 20:35:52 +00:00
Ralph Castain
98580c117b Introduce staged execution. If you don't have adequate resources to run everything without oversubscribing, don't want to oversubscribe, and aren't using MPI, then staged execution lets you (a) run as many procs as there are available resources, and (b) start additional procs as others complete and free up resources. Adds a new mapper as well as a new state machine.
Remove some stale configure.m4's we no longer need.

Optimize the nidmaps a bit by only sending info that has changed each time, instead of sending a complete copy of everything. Makes no difference for the typical MPI job - only impacts things like staged execution where we are sending multiple (possibly many) launch messages.

This commit was SVN r27165.
2012-08-28 21:20:17 +00:00
Ralph Castain
e0c39c94e8 Complete the cleanup of the preload files system. Remove the dest_dir option as moving things to arbitrary locations - especially absolute paths - can prove disastrous. Remove the preload_libs option as these can be treated as just files. Cleanup some of the pack/unpack code as the dss handles NULL strings just fine. Deal a little better with absolute paths, noting that tar now strips the leading '/' for us (showing my age as it didn't used to do so).
Remove the odls_base_state.c file as that code is now covered by the new broadcast form of preload_files.

This commit was SVN r27127.
2012-08-24 02:28:29 +00:00
Ralph Castain
b4a544ad2a Per discussion with Josh, use the --preload-xxx cmd line options to broadcast files to all nodes. Add --set-cwd-to-session-dir option to start procs in their session directories. Add OMPI_FILE_LOCATION envar to tell procs where their prepositioned files went.
This commit was SVN r27125.
2012-08-23 21:28:05 +00:00
Ralph Castain
e4d82b8912 Turn off the common port by default by now until we get rollup working properly on ALL platforms
This commit was SVN r27060.
2012-08-15 22:13:04 +00:00