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593 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
089c632cce Remove a bunch of dead code: gcc 4.7 warns of set-but-unused
variables.  So get rid of them.

This commit was SVN r28538.
2013-05-17 21:45:49 +00:00
Ralph Castain
f15fe5045e Ensure that debugger connect can occur by getting the rml contact info updated before calling init_after_spawn
cmr:v1.7.3,reviewer=jsquyres

This commit was SVN r28455.
2013-05-06 22:00:45 +00:00
Ralph Castain
27e3e382d5 No need for ORTE tools to use orte progress thread
This commit was SVN r28445.
2013-05-04 21:13:20 +00:00
Nathan Hjelm
cf377db823 MCA/base: Add new MCA variable system
Features:
 - Support for an override parameter file (openmpi-mca-param-override.conf).
   Variable values in this file can not be overridden by any file or environment
   value.
 - Support for boolean, unsigned, and unsigned long long variables.
 - Support for true/false values.
 - Support for enumerations on integer variables.
 - Support for MPIT scope, verbosity, and binding.
 - Support for command line source.
 - Support for setting variable source via the environment using
   OMPI_MCA_SOURCE_<var name>=source (either command or file:filename)
 - Cleaner API.
 - Support for variable groups (equivalent to MPIT categories).

Notes:
 - Variables must be created with a backing store (char **, int *, or bool *)
   that must live at least as long as the variable.
 - Creating a variable with the MCA_BASE_VAR_FLAG_SETTABLE enables the use of
   mca_base_var_set_value() to change the value.
 - String values are duplicated when the variable is registered. It is up to
   the caller to free the original value if necessary. The new value will be
   freed by the mca_base_var system and must not be freed by the user.
 - Variables with constant scope may not be settable.
 - Variable groups (and all associated variables) are deregistered when the
   component is closed or the component repository item is freed. This
   prevents a segmentation fault from accessing a variable after its component
   is unloaded.
 - After some discussion we decided we should remove the automatic registration
   of component priority variables. Few component actually made use of this
   feature.
 - The enumerator interface was updated to be general enough to handle
   future uses of the interface.
 - The code to generate ompi_info output has been moved into the MCA variable
   system. See mca_base_var_dump().

opal: update core and components to mca_base_var system
orte: update core and components to mca_base_var system
ompi: update core and components to mca_base_var system

This commit also modifies the rmaps framework. The following variables were
moved from ppr and lama: rmaps_base_pernode, rmaps_base_n_pernode,
rmaps_base_n_persocket. Both lama and ppr create synonyms for these variables.

This commit was SVN r28236.
2013-03-27 21:09:41 +00:00
Ralph Castain
6ee32767d4 Restore the cpus-per-proc option for byslot and bynode mapping. Remove the bind_idx (which recorded the index of the hwloc object where the proc was bound) as this would no longer be unique, and just use the bitmap as the standard reference for location. Update the relative locality computation to take bitmaps as its argument.
This commit was SVN r28219.
2013-03-26 18:27:50 +00:00
Ralph Castain
a4b6fb241f Remove all remaining vestiges of the Windows integration
This commit was SVN r28137.
2013-02-28 17:31:47 +00:00
Ralph Castain
cf9796accd Remove the old configure option for disabling full rte support - we now use the OMPI rte framework for such purposes
This commit was SVN r28134.
2013-02-28 01:35:55 +00:00
Jeff Squyres
9bd4b814db Fix one more nroff macro issue
This commit was SVN r28090.
2013-02-21 17:38:06 +00:00
Jeff Squyres
76fcd42bc3 Fix minor nroff macro issues.
This commit was SVN r28088.
2013-02-21 17:35:36 +00:00
Jeff Squyres
12e047e594 Update documentation for rankfiles in orterun.1:
* Add a little more description of what rankfiles are
 * Update that we use logical numbering for socket:core notation
 * Mention +nX notation

This commit was SVN r28067.
2013-02-16 17:52:30 +00:00
Ralph Castain
c0b670bea8 I guess some profiling tools and debuggers require that the argv[0] of each rank be unique so they can create a filename based on that value. For those obscure cases, provide an mpirun cmd line option that indexes each argv[0] by rank
This commit was SVN r28064.
2013-02-15 20:20:49 +00:00
Ralph Castain
744ed49b2d Begin cleanup of the thread_lock calls in ORTE. We'll ignore the ones in the rml/oob for now as that code block is being rewritten anyway.
This commit was SVN r28053.
2013-02-13 01:53:12 +00:00
Ralph Castain
c96cc2d5a0 In order to properly connect to debuggers like STAT, we need to get the hostname in its unstripped version for the MPIR_proctab. Unfortunately, we need a stripped version for Cray's alps launcher. So when we are stripping the hostname prefix, retain alias hostnames and add the ability to specify an alias to use in the proctab.
This commit was SVN r27863.
2013-01-18 05:00:05 +00:00
Ralph Castain
5b8de0b9f4 Ouch - opal_progress calls event_loop with a NO_BLOCK flag. So when run without progress threads, the ORTE tools were not blocking in the event lib as they should be. Avoid calling opal_progress inside ORTE by directly using the event_loop call instead of ORTE_WAIT_FOR_COMPLETION as parts of the OMPI layer are using that macro.
Thanks to George for spotting the problem.

This commit was SVN r27815.
2013-01-14 23:06:42 +00:00
Ralph Castain
72bea688f1 Fix typo
This commit was SVN r27717.
2012-12-23 18:13:39 +00:00
Ralph Castain
852a709c0e Add libopen-pal to the libraries as all these tools directly reference OPAL functions, and the list of OS's that don't support indirect linking grows (Mac and Ubuntu, for now).
This commit was SVN r27716.
2012-12-23 15:54:05 +00:00
Ralph Castain
fefec03e78 Enable all ORTE tools to use progress threads if they are enabled
This commit was SVN r27593.
2012-11-12 02:54:09 +00:00
Ralph Castain
bd887f7f56 Add a new "test" component to the DFS that treats all files as remote in order to test the app-to-daemon interactions on a single machine. Set a global param to indicate we are using staged execution. Add a param to indicate it is okay for non-MPI processes to execute without finalizing. Cleanup file map load and fetch operations.
This commit was SVN r27587.
2012-11-10 14:09:12 +00:00
Nathan Hjelm
2acd0f83de Revert "Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter".
It appears the problem was not with the command line parser but the rsh plm. I don't know why this problem was not occuring before the command line parser changes but it appears to be resolved now.

This commit was SVN r27527.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-30 19:45:18 +00:00
Ralph Castain
a080de188f Enable orterun to directly support staged execution, treating each app as a separate job. Support transfer of file maps when support exists.
This commit was SVN r27516.
2012-10-29 23:11:30 +00:00
Ralph Castain
e6014bf2e1 Revert r27451 and r27456 - the cmd line parser is incorrectly marking the application as an MCA parameter
This commit was SVN r27477.

The following SVN revision numbers were found above:
  r27451 --> open-mpi/ompi@d59034e6ef
  r27456 --> open-mpi/ompi@ecdbf34937
2012-10-24 18:38:44 +00:00
Nathan Hjelm
d59034e6ef MCA: remove deprecated mca_base_param functions (mca_base_param_register_int, mca_base_param_register_string, mca_base_param_environ_variable). Remove all uses of deprecated functions.
cmr:v1.7

This commit was SVN r27451.
2012-10-17 20:17:37 +00:00
Jeff Squyres
a8f8064d8b Add a missing free(). Refs trac:3292.
This commit was SVN r27298.

The following Trac tickets were found above:
  Ticket 3292 --> https://svn.open-mpi.org/trac/ompi/ticket/3292
2012-09-11 17:59:40 +00:00
Ralph Castain
6d29cecce1 Fix the help message warning of multiple prefixes so it correctly prints out the info, and fix a typo.
cmr:v1.7

This commit was SVN r27241.
2012-09-05 16:28:36 +00:00
Ralph Castain
bae5dab916 If (and only if) a user requests, set the default number of slots on any node to the number of objects of the specified type. This *only* takes effect in an unmanaged environment - i.e., if an external resource manager assigns us a number of slots, then that is what we use. However, if we are using a hostfile, then the user may or may not have given us a value for the number of slots on each node.
For those nodes (and *only* those nodes) where the user does *not* specify a slot count, we will set the number of slots according to their direction: either to the number of cores, numas, sockets, or hwthreads. Otherwise, the slot count is set to 1.

Note that the default behavior remains unchanged: in the absence of any value for #slots, and in the absence of any directive to set #slots, we will set #slots=1.

This commit was SVN r27236.
2012-09-04 20:58:26 +00:00
Ralph Castain
98580c117b Introduce staged execution. If you don't have adequate resources to run everything without oversubscribing, don't want to oversubscribe, and aren't using MPI, then staged execution lets you (a) run as many procs as there are available resources, and (b) start additional procs as others complete and free up resources. Adds a new mapper as well as a new state machine.
Remove some stale configure.m4's we no longer need.

Optimize the nidmaps a bit by only sending info that has changed each time, instead of sending a complete copy of everything. Makes no difference for the typical MPI job - only impacts things like staged execution where we are sending multiple (possibly many) launch messages.

This commit was SVN r27165.
2012-08-28 21:20:17 +00:00
Ralph Castain
e0c39c94e8 Complete the cleanup of the preload files system. Remove the dest_dir option as moving things to arbitrary locations - especially absolute paths - can prove disastrous. Remove the preload_libs option as these can be treated as just files. Cleanup some of the pack/unpack code as the dss handles NULL strings just fine. Deal a little better with absolute paths, noting that tar now strips the leading '/' for us (showing my age as it didn't used to do so).
Remove the odls_base_state.c file as that code is now covered by the new broadcast form of preload_files.

This commit was SVN r27127.
2012-08-24 02:28:29 +00:00
Ralph Castain
b4a544ad2a Per discussion with Josh, use the --preload-xxx cmd line options to broadcast files to all nodes. Add --set-cwd-to-session-dir option to start procs in their session directories. Add OMPI_FILE_LOCATION envar to tell procs where their prepositioned files went.
This commit was SVN r27125.
2012-08-23 21:28:05 +00:00
Ralph Castain
a572b6fa9f Pick the right place
This commit was SVN r27085.
2012-08-17 00:28:28 +00:00
Ralph Castain
35fef87202 Make the "no virtual machine" selection more intuitive by providing a --novm option to mpirun.
This commit was SVN r27048.
2012-08-15 14:55:03 +00:00
Ralph Castain
589acf550c Improve the new MPI_INFO_ENV to better handle Java applications and to correctly report the info for singletons.
This commit was SVN r27025.
2012-08-13 22:13:49 +00:00
Jeff Squyres
3719b6c68b After some further discussion between Jeff, Ralph, and Josh, rever
r26951.  The feeling is that fixing the actual problem of the command
line parser not always identifying when invalid command line options
were specified (i.e., r26953) was a better solution.

This commit was SVN r26979.

The following SVN revision numbers were found above:
  r26951 --> open-mpi/ompi@1f8df92c3c
  r26953 --> open-mpi/ompi@0b7b3feba9
2012-08-09 20:56:01 +00:00
Ralph Castain
1f8df92c3c Remove the confusion over which options are "to" and which are "by" by creating synonyms so that either spelling works.
This commit was SVN r26951.
2012-08-05 14:40:38 +00:00
Ralph Castain
c7f9a0fa34 Check for recursive use of mpirun - issue error message and abort if detected
This commit was SVN r26903.
2012-07-28 21:50:56 +00:00
Ralph Castain
269cb2b8d9 Some cleanup to remove calls to opal_progress when running with orte progress threads, and to ensure that all orte-related events are in the orte event base.
This commit was SVN r26591.
2012-06-11 19:59:53 +00:00
Ralph Castain
d6279fc971 Fix the debugger daemon launch support to fit the new state machine. Treat debugger daemons just like any other job, except that we map them only to nodes where an app process currently exists (as opposed to every node in the system). Trigger breakpoint and rank0 release only after the debugger daemons are in position.
This commit was SVN r26556.
2012-06-06 02:01:23 +00:00
Ralph Castain
be6ed9c2df Allow partial use of allocations by specifying the max number of daemons (i.e., max VM size) for the job
This commit was SVN r26499.
2012-05-27 16:48:19 +00:00
Jeff Squyres
7969faf372 Fixes trac:3057: minor update to the man page to state that slot locations
in rankfiles use ''physical'' device indexes (vs. logical indexes).

This commit was SVN r26478.

The following Trac tickets were found above:
  Ticket 3057 --> https://svn.open-mpi.org/trac/ompi/ticket/3057
2012-05-23 11:43:33 +00:00
Ralph Castain
a526afae92 Ensure we always cleanup local procs, no matter how we exited.
This commit was SVN r26454.
2012-05-18 23:37:40 +00:00
Jeff Squyres
2ba10c37fe Per RFC, bring in the following changes:
* Remove paffinity, maffinity, and carto frameworks -- they've been
   wholly replaced by hwloc.
 * Move ompi_mpi_init() affinity-setting/checking code down to ORTE.
 * Update sm, smcuda, wv, and openib components to no longer use carto.
   Instead, use hwloc data.  There are still optimizations possible in
   the sm/smcuda BTLs (i.e., making multiple mpools).  Also, the old
   carto-based code found out how many NUMA nodes were ''available''
   -- not how many were used ''in this job''.  The new hwloc-using
   code computes the same value -- it was not updated to calculate how
   many NUMA nodes are used ''by this job.''
   * Note that I cannot compile the smcuda and wv BTLs -- I ''think''
     they're right, but they need to be verified by their owners.
 * The openib component now does a bunch of stuff to figure out where
   "near" OpenFabrics devices are.  '''THIS IS A CHANGE IN DEFAULT
   BEHAVIOR!!''' and still needs to be verified by OpenFabrics vendors
   (I do not have a NUMA machine with an OpenFabrics device that is a
   non-uniform distance from multiple different NUMA nodes).
 * Completely rewrite the OMPI_Affinity_str() routine from the
   "affinity" mpiext extension.  This extension now understands
   hyperthreads; the output format of it has changed a bit to reflect
   this new information.
 * Bunches of minor changes around the code base to update names/types
   from maffinity/paffinity-based names to hwloc-based names.
 * Add some helper functions into the hwloc base, mainly having to do
   with the fact that we have the hwloc data reporting ''all''
   topology information, but sometimes you really only want the
   (online | available) data.

This commit was SVN r26391.
2012-05-07 14:52:54 +00:00
Ralph Castain
b2f77bf08f Extend the iof by adding two new components to support map-reduce IO chaining. Add a mapreduce tool for running such applications.
Fix the state machine to support multiple jobs being simultaneously launched as this is not only required for mapreduce, but can happen under comm-spawn applications as well.

This commit was SVN r26380.
2012-05-02 21:00:22 +00:00
Ralph Castain
a927318ea1 Add -N option as synonym for "npernode"
This commit was SVN r26367.
2012-05-01 16:18:14 +00:00
Ralph Castain
5d14fa7546 Fix mpi_abort, minimize error output.
This commit was SVN r26266.
2012-04-11 14:37:08 +00:00
Ralph Castain
14d5525fb1 Some minor cleanups. Get singletons working. Cleanup abort handling so it gets properly identified.
This commit was SVN r26261.
2012-04-10 19:08:54 +00:00
Ralph Castain
bd8b4f7f1e Sorry for mid-day commit, but I had promised on the call to do this upon my return.
Roll in the ORTE state machine. Remove last traces of opal_sos. Remove UTK epoch code.

Please see the various emails about the state machine change for details. I'll send something out later with more info on the new arch.

This commit was SVN r26242.
2012-04-06 14:23:13 +00:00
Ralph Castain
6dc44dc4b8 Look at the basename of the appname for the "java" keyword
This commit was SVN r26190.
2012-03-24 00:38:18 +00:00
Josh Hursey
a595525366 Add the callers name to the 'comm failed' error message, so we know between which two peers the communication failed.
This commit was SVN r26117.
2012-03-08 21:55:19 +00:00
Ralph Castain
c3cf46af65 Ensure install_dirs are filled in before parsing prefix
This commit was SVN r26093.
2012-03-03 23:14:15 +00:00
Ralph Castain
b8f093d1a0 Switch precedence - take the --prefix value over the absolute-path-to-mpirun so the backend prefix can be different from that of mpirun on hetero machines.
This commit was SVN r26085.
2012-03-02 22:59:13 +00:00
Ralph Castain
6c93dd13b0 Cleanup the prefix handling by mpirun. Important note: we do NOT support per-app_context prefixes!!
Don't let app_files trump given prefix values. Assign according to following precedence rules:

1. absolute path to mpirun, if given
2. --prefix value, if given to mpirun
3. default prefix, if configured with --enable-orterun-prefix-default
4. prefix from first app in app_file, if given
5. no prefix

This commit was SVN r26081.
2012-03-02 19:48:25 +00:00