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2759 Коммитов

Автор SHA1 Сообщение Дата
George Bosilca
3445577f4c Avoid race conditions during BTP TCP handshake.
In some rare cases when a process receives the connect ack while
locally updating the peer endpoint structure, we could drop the
incomming connect ack due to the fact that the send handler is
protected with a try lock (on the endpoint) and our initial send
event was not persistent. Making the send event persistent solves
all issues.
2016-05-01 14:19:29 -04:00
George Bosilca
702f80ad7e Remove "signed vs. unsigned" warnings. 2016-05-01 11:45:48 -04:00
Ralph Castain
42d9d861fc Fix minor typo in PMIx packing of pmix_app_t - thanks to Gilles for pointing it out 2016-04-29 08:55:46 -07:00
Howard Pritchard
f52dd511d4 Merge pull request #1600 from hppritcha/topic/pmix_fix_for_finalize
pmix/cray: set fence_nb to NULL
2016-04-28 13:50:15 -06:00
hppritcha
aa1d7b9c50 pmix/cray: set fence_nb to NULL
Rather than have a stub function for the pmix fence_nb
operation, just set to NULL.  Causes fewer problems.

Fixes #1597
Fixes #1527

Signed-off-by: hppritcha <howardp@lanl.gov>
2016-04-28 13:48:54 -05:00
Nysal Jan K.A
18cf65dc24 Remove a stray print statement 2016-04-28 18:00:52 +05:30
Nathan Hjelm
03f4a854cb btl/tcp: fix add_procs race condition
This commit fixes a race between a thread calling the tcp btl's
add_procs and a thread processing an incomming connection. The race
occured because the add_procs thread adds a newly created proc object
to the hash table *before* the object is fully initialized. The
connection thread then attempts to use the object before the endpoints
array on the object has beeen allocation. The fix is to only add the
proc to the hash table after it has been completely initialized.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-27 10:24:39 -06:00
Nathan Hjelm
8f93b15e90 Merge pull request #1580 from hjelmn/new_hooks_update
memory/patcher: cast away const in shmdt hook
2016-04-26 17:48:01 -06:00
Nathan Hjelm
df194087c7 Merge pull request #1591 from hjelmn/rcache_update
rcache: fix leave_pinned failure path
2016-04-26 16:50:06 -06:00
Nathan Hjelm
25a97af695 rcache: fix leave_pinned failure path
This commit fixes an error in the failure path of leave_pinned. When
the rcache tries to enable leave_pinned but leave_pinned was not
specifically requested (opal_leave_pinned == -1) the code was
erroneously printing an error and returning NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-26 14:39:23 -06:00
Ralph Castain
02876564d4 Silence warning of zero-byte malloc 2016-04-26 11:55:59 -07:00
Nathan Hjelm
5612998d21 memory/patcher: cast away const in shmdt hook
The opal_mem_hooks_release_hook does not have const on the pointer
(though it probably should). This commit eliminates a warning by
casting away the const until opal_mem_hooks_release_hook is updated to
use const.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-25 15:32:11 -06:00
Jeff Squyres
78b367eb0d memory patcher: add some clarifying comments
This is complicated stuff: add some comments so that future
maintainers have some rationale to understand the way things have been
done.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-25 13:12:02 -07:00
Geoffrey Paulsen
55a15fb1d0 Missed one IBM Copyright message for contributions in memory patcher component 2016-04-25 15:47:15 -04:00
Geoffrey Paulsen
ed6f508735 Updated IBM Copyright message for contributions in memory patcher component. 2016-04-25 15:13:38 -04:00
Karol Mroz
e1c64e6e59 opal: standardize on max hostname length
Define OPAL_MAXHOSTNAMELEN to be either:
  (MAXHOSTNAMELEN + 1) or
  (limits.h:HOST_NAME_MAX + 1) or
  (255 + 1)

For pmix code, define above using PMIX_MAXHOSTNAMELEN.

Fixup opal layer to use the new max.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-04-24 08:19:47 +02:00
Jeff Squyres
dc18c32437 usnic: fix resource check
The math for checking the number of QPs and CQs per usNIC/VF was
incorrect, allowing you to run MPI processes even when usNICs (i.e.,
VIC VFs) had fewer QPs and CQs than were necessary.  This led to a
confusing error later when fi_enable(3) failed (because we lazily
create QPs).  Fixing the math here ensure that we actually print a
helpful error message telling the user specifically what is wrong.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-22 15:58:27 -07:00
Jeff Squyres
68c1a5eb6c Merge pull request #1567 from jsquyres/pr/fix-ompi-to-opal-name-conversion
m4: rename OMPI_SUMMARY_* macros to OPAL_SUMMARY_*
2016-04-20 13:10:06 -04:00
Jeff Squyres
6800ef9ec0 m4: rename OMPI_SUMMARY_* macros to OPAL_SUMMARY_*
These macros should really be named OPAL_SUMMARY_*; they're used in
all projects, and therefore should be in the lowest later project (OPAL).

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-04-20 08:40:00 -07:00
Nathan Hjelm
db854c368a memory/patcher: do not hook madvise if the syscall doesn't exist
Fixes open-mpi/ompi#1565

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-20 09:18:31 -06:00
Nathan Hjelm
fdd1ff7c29 Merge pull request #1562 from hjelmn/opal_coverity
mca/base: fix coverity issue
2016-04-19 14:29:05 -06:00
Nathan Hjelm
3f15d442de Merge pull request #1561 from hjelmn/mpool_rewrite
rcache/base: add missing file to tarball
2016-04-19 12:00:06 -06:00
Nathan Hjelm
16c28399cd rcache/base: add missing file to tarball
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 11:03:38 -06:00
Nathan Hjelm
d981a9fc7d patcher/overwrite: fix compile error on x86
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:39 -06:00
Nathan Hjelm
5bc9d9d1f8 patcher/linux: fix compiler warnings
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:20 -06:00
Nathan Hjelm
1147fb3dd1 patcher/linux: ensure component is only enabled on Linux
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-19 10:16:00 -06:00
Nathan Hjelm
a8e90e8796 memory/patcher: munmap hook could be called from within a malloc() implementation
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 15:00:07 -06:00
Nathan Hjelm
7f271171f6 memory/patcher: fix coverity warning
Fix CID 1358512:  Error handling issues  (NEGATIVE_RETURNS):

C libraries usually handle read (-1, ...) fine but it is safer to
avoid calling read with a negative handle. Added negative file
descriptor check.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-18 11:29:20 -06:00
Gilles Gouaillardet
d96919638f pmix: remote autogenerated file and update .gitignore
removed: opal/mca/pmix/pmix114/pmix/src/include/private/autogen/config.h.in
2016-04-18 12:57:41 +09:00
Ralph Castain
b009e58d25 Roll to PMIx 1.1.4rc2 - replaces some code that was incorrectly removed in prior update 2016-04-16 18:24:24 -07:00
Ralph Castain
8ff114e668 Update to official PMIx 1.1.4rc1 2016-04-15 21:47:46 -07:00
Ralph Castain
449ec41532 Roll to PMIx 1.1.4rc1 and remove the PMIx 1.2.0 directory as the community has decided to not do that release version. This incorporates a number of bug fixes that have been identified and repaired in the PMIx and OMPI code bases. Also includes several minor corrections to the PMIx code so it now supports run-thru without hanging on collectives involving a process that exits 2016-04-15 10:11:11 -07:00
Nathan Hjelm
4d9c047f04 Merge pull request #1546 from hjelmn/mpool_rewrite
rcache: add missing file
2016-04-14 10:22:09 -06:00
Nathan Hjelm
9046424be5 rcache: add missing file
Fixes #1545

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-14 09:21:09 -06:00
Ralph Castain
4b3995dd27 Trivial change to silence warning 2016-04-14 05:54:02 -07:00
Nathan Hjelm
1e6b4f2f55 Merge pull request #1495 from hjelmn/new_hooks
Add new patcher memory hooks
2016-04-13 18:19:23 -06:00
Nathan Hjelm
c2b6fbb124 opal/memory: move initialization to first rcache creation
Because of the removal of the linux memory component it is no longer
necessary to initialize the memory component in opal_init(). This
commit moves the initialization to the creation of the first rcache
component.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:21:46 -06:00
Nathan Hjelm
80ec79cfc8 memory/patcher: updates to memory hooks
This commit fixes bugs that can cause crashes and memory corruption
when the mremap hook is called. The problem occurs because of the
ellipses (...) in the mremap intercept function. The ellipses cover
the optional new_addr argument on Linux. This commit removes the
ellipses and adds an explicit 5th argument.

This commit also adds a hook for shmdt. The code only works on Linux
at the moment as it needs to read /proc/self/maps to determine the
size of the shared memory segment.

Additionally, this commit removes the mmap hook. There is no
apparent benefit for detecting mmap(..., PROT_NONE, ...) and it
seems to cause problems when threads are in use.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:20:24 -06:00
Nathan Hjelm
91bcab93cb opal/memory: remove ptmalloc2
This commit removes the ptmalloc2 memory hooks. This is necessary in
order to support lazy registration of memory hooks. A feature that is
not supported by the ptmalloc hooks but is supported by the new
patcher hooks.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:18:15 -06:00
Nathan Hjelm
27f8a4e806 opal: add code patcher framework
This commit adds a framework to abstract runtime code patching.
Components in the new framework can provide functions for either
patching a named function or a function pointer. The later
functionality is not being used but may provide a way to allow memory
hooks when dlopen functionality is disabled.

This commit adds two different flavors of code patching. The first is
provided by the overwrite component. This component overwrites the
first several instructions of the target function with code to jump to
the provided hook function. The hook is expected to provide the full
functionality of the hooked function.

The linux patcher component is based on the memory hooks in ucx. It
only works on linux and operates by overwriting function pointers in
the symbol table. In this case the hook is free to call the original
function using the function pointer returned by dlsym.

Both components restore the original functions when the patcher
framework closes.

Changes had to be made to support Power/PowerPC with the Linux
dynamic loader patcher. Some of the changes:

 - Move code necessary for powerpc/power support to the patcher
   base. The code is needed by both the overwrite and linux
   components.

 - Move patch structure down to base and move the patch list to
   mca_patcher_base_module_t. The structure has been modified to
   include a function pointer to the function that will unapply the
   patch. This allows the mixing of multiple different types of
   patches in the patch_list.

 - Update linux patching code to keep track of the matching between
   got entry and original (unpatched) address. This allows us to
   completely clean up the patch on finalize.

All patchers keep track of the changes they made so that they can be
reversed when the patcher framework is closed.

At this time there are bugs in the Linux dynamic loader patcher so
its priority is lower than the overwrite patcher.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:13 -06:00
Nathan Hjelm
4cac623aeb opal/patch: add call to check if binary patching is supported
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:16:12 -06:00
Nathan Hjelm
11e2d7886e opal/memory: update component structure
This commit makes it possible to set relative priorities for
components. Before the addition of the patched component there was
only one component that would run on any system but that is no longer
the case. When determining which component to open each component's
query function is called and the one that returns the highest priority
is opened. The default priority of the patcher component is set
slightly higher than the old ptmalloc2/ummunotify component.

This commit fixes a long-standing break in the abstration of the
memory components. ompi_mpi_init.c was referencing the linux malloc
hook initilize function to ensure the hooks are initialized for
libmpi.so. The abstraction break has been fixed by adding a memory
base function that calls the open memory component's malloc hook init
function if it has one. The code is not yet complete but is intended
to support ptmalloc in 2.0.0. In that case the base function will
always call the ptmalloc hook init if exists.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:14:51 -06:00
Nathan Hjelm
7aa03d66b3 opal/memory: add support for patch based memory hooks
This commit adds support for runtime binary patching. The support is
broken down into two parts: util/opal_patcher.[ch] which contains the
functionality for runtime patching of symbols, and mca/memory/patcher
which patches the various symbols needed to provide support for memory
hooks. This work is preliminary and is based off work donated by IBM.

The patcher code is disabled if dlopen is disabled.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-04-13 17:14:31 -06:00
Gilles Gouaillardet
c72688e8cf Merge pull request #1362 from ggouaillardet/topic/openib_warn_default_gid_prefix
btl/openib: correctly issue a warning when two btls or more are in th…
2016-04-11 13:22:48 +09:00
Gilles Gouaillardet
4ab6c8ad56 mpool/hugepage: use statvfs() instead of statfs() when needed.
Thanks Siegmar Gross for the report.
2016-04-11 11:13:29 +09:00
Ralph Castain
2432daf065 Some minor cleanups of a memory leak and error output 2016-04-08 07:46:18 -07:00
Rainer Keller
52080a5736 As per the pull request to pmix/master:
https://github.com/pmix/master/pull/71

Have OMPI's current version of pmix120 nicely fail in case of
too long sun_path (longer than 108 or in case of OSX 103 chars).
And have OMPI return proper error messages with hints how to
amend.
2016-04-07 22:12:53 +02:00
Thananon Patinyasakdikul
92290b94e0 Fixed Coverity reports 1358014-1358018 (DEADCODE and CHECK_RETURN) 2016-04-07 12:52:17 -04:00
Nathan Hjelm
9efd465539 Merge pull request #1517 from hjelmn/ugni_fixes
Gemini/Aries bug fixes
2016-04-05 07:23:18 -06:00
George Bosilca
26fc8533f8 Remove compiler warnings. 2016-04-04 16:34:23 -04:00