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Автор SHA1 Сообщение Дата
George Bosilca
3adff9d323 Fixes #1793. 
Reshape the tearing down process (connection close) to prevent race
conditions between the main thread and the progress thread.

Minor cleanups.
 2016-08-24 22:45:19 -04:00
Nathan Hjelm
83062db7cb btl/ugni: actually make the endpoint lock recursive 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-24 10:36:08 -06:00
Gilles Gouaillardet
2eec8970ff opal/util: fix (again) incorrect type casting in opal_path_df 
this fixes previous commit open-mpi/ompi@a439afce5b
 2016-08-24 12:50:15 +09:00
Gilles Gouaillardet
02847d9e7b pmix2x: dstore: add missing <fcntl.h> include file in pmix_esh.c 
(back-ported from upstream pmix/master@5c66ffe0f0)
 2016-08-24 11:18:46 +09:00
Gilles Gouaillardet
c11e8163f8 pmix2x: sec/native: fix the pmix_native module under solaris by using getpeerucred() 
and fail with a user friendly message if no method is available:
"sec: native cannot validate_cred on this system"

(back-ported from upstream pmix/master@c474a1fc60)
 2016-08-24 11:18:40 +09:00
Gilles Gouaillardet
e91292aa41 pmix2x: configury: add missing check for <netdb.h> header file 
(back-ported from upstream pmix/master@e54ce6d423)
 2016-08-24 11:18:32 +09:00
Gilles Gouaillardet
a439afce5b opal/util: fix incorrect type casting in opal_path_df 2016-08-24 10:26:13 +09:00
Potnuri Bharat Teja
9b7f9ece20 Add Chelsio T6 adapter device parameters. 
Signed-off-by: Potnuri Bharat Teja <bharat@chelsio.com>
 2016-08-23 10:38:13 +05:30
Ralph Castain
639dbdb7ea For maintainability, fold the external PMIx 2.x integration into the internal PMIx 2.x library component. This ensures that we always stay in sync with the two as that is becoming a problem. 2016-08-22 13:28:55 -07:00
George Bosilca
fd57f5bccd Remove some of the clang warnings. 2016-08-20 14:21:42 -04:00
Ralph Castain
61ffba668b Roll in the latest PMIx version - includes shared memory datastore and reduced memory footprint 2016-08-20 07:53:06 -07:00
Artem Polyakov
6ea8cccdab Merge pull request #1969 from artpol84/pmix_jobid_fix 
Pmix jobid fix
 2016-08-18 17:24:58 +07:00
Ralph Castain
7da9793fef Support the PMIX_TIMEOUT key at the PMIx server when timeout=0 - this indicates that the user doesn't want a lookup of any data from the host RM. 2016-08-17 16:26:58 -05:00
Gilles Gouaillardet
3126ff77e2 pmix2x: common syms: whitelist bison-generated common symbols 
Bison generates some common symbols that we can't do anything about,
so whitelist them.
 2016-08-16 11:29:06 +09:00
Artem Polyakov
c5a91c5c9d opal/pmix: fix pmix jobid calculation if external PMIx server is used. 2016-08-15 21:13:51 +03:00
Ralph Castain
ecbedee8bb Fix typo 2016-08-15 07:32:00 -07:00
Artem Polyakov
f3c816b52e opal/pmix: fix indentation in some files. 2016-08-15 18:21:50 +07:00
Gilles Gouaillardet
483685eb6a update .gitignore 
remove autogenerated opal/mca/pmix/pmix2x/pmix/src/include/pmix_config.h.in
 2016-08-15 17:00:20 +09:00
Ralph Castain
be8424b691 Provide backward compatible keys so that the non-PMIx components in the opal/pmix framework don't have to adjust as we continue to work on finalizing the PMIx reference scheme. Activate and utilize the new PMIx show_help capability to provide more meaningful error output when the server cannot start. 
Add a contrib script to cleanup permissions incorrectly modified due to things like smb mounts

dd
 2016-08-13 12:13:04 -07:00
rhc54
ddde154d28 Merge pull request #1962 from rhc54/topic/notify 
Ensure we properly convert pmix status to ORTE state before activatin…
 2016-08-13 06:59:50 -07:00
Ralph Castain
48d35a9627 Ensure we properly convert pmix status to ORTE state before activating an error state upon notification. Cleanup some conversion issues on notification info. Add a new orte_notify.c test program 2016-08-12 21:14:29 -07:00
Ralph Castain
4a4c9703a9 Setup the job list in the PMIx integration so that static ports can run 2016-08-12 13:27:10 -07:00
Ralph Castain
0e58609327 Fix a bug where we were requiring that all paths in $PATH be absolute. Some users provide relative paths in their environment, and we should respect those. 2016-08-12 11:28:57 -07:00
Ralph Castain
1d44f0c0e2 Silence Coverity warnings 2016-08-11 21:22:01 -07:00
Ralph Castain
73544d2e00 Rename symbol 2016-08-11 13:06:46 -07:00
Ralph Castain
b0cc9b0bc8 Update to latest PMIx toolext branch 
Fix indentations

Update the ext20 component to match latest PMIx master.

Cleanup name conflicts and uninit vars
 2016-08-11 12:29:48 -07:00
Gilles Gouaillardet
dfbf2b7be4 opal/threads: add OPAL_THREAD_SUB_SIZE_T macro 
-1 is not a valid size_t, so instead of OPAL_THREAD_ADD_SIZE_T(..., -1),
simply OPAL_THREAD_SUB_SIZE_T(..., 1) and keep picky compilers happy
 2016-08-10 13:37:36 +09:00
rhc54
60f789dca1 Merge pull request #1948 from rhc54/topic/pmixtool 
Update to include extended tool support, new datatypes
 2016-08-09 16:17:28 -07:00
Nathan Hjelm
19be439998 Merge pull request #1949 from hjelmn/ugni_fix 
btl/ugni: fix another connection race
 2016-08-09 08:32:40 -06:00
Nathan Hjelm
38f18eed22 Merge pull request #1941 from ggouaillardet/topic/memory_patcher_configury 
configury: make memory/patcher symbol detection more robust
 2016-08-09 07:06:38 -06:00
Gilles Gouaillardet
13009aa290 opal/alfg: have opal_random() wrapper always return a positive int 2016-08-09 17:12:30 +09:00
Gilles Gouaillardet
6f6b3ac68a configury: standardize memory/patcher symbol detection and make it more robust 
by default, Sun compilers optimize out the original test, and hence fail detecting a symbol is missing.
 2016-08-09 09:35:52 +09:00
Nathan Hjelm
adb668209b btl/ugni: fix another connection race 
This commit fixes a race that can occur when two threads are in the
ugni progress function at the same time. This race occurs when one
thread calls GNI_PostDataProbeById then goes to sleep then another
thread calls GNI_PostDataProbeById then GNI_EpPostDataWaitById before
the other thread wakes up. If this happens the first thread will print
a warning on GNI_EpPostDataWaitById about no matching post.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-08 15:38:11 -06:00
Ralph Castain
527b5c692a Update to include extended tool support, new datatypes 2016-08-08 13:39:46 -07:00
Todd Kordenbrock
b90da992c8 Merge pull request #1895 from PDeveze/Patchs-on-btl-portals4 
btl/portals4: Take into account the limitation of portals4 (max_msg_s…
 2016-08-08 15:12:50 -05:00
Nathan Hjelm
5ced037488 Merge pull request #1939 from hjelmn/ugni_fix 
btl/ugni: protect against re-entry and races in connections
 2016-08-08 08:55:30 -06:00
Artem Polyakov
b24ec3e3b9 pmix/s2: fix indentation (only) 2016-08-06 16:31:19 +06:00
Artem Polyakov
2cb923a413 pmix/s1: fix indentation (only) 2016-08-06 16:30:45 +06:00
Artem Polyakov
8aa3ef7799 pmix/s2: fix s2 component data placement 
Use wildcard for the information related to the job-level data.
Fixes s2 component with regard to PR https://github.com/open-mpi/ompi/pull/1897.
 2016-08-06 15:49:16 +06:00
Artem Polyakov
81063f1717 pmix/s1: fix s1 component data placement 
Use wildcard for the information related to the job-level data.
Fixes s1 component with regard to PR https://github.com/open-mpi/ompi/pull/1897.
 2016-08-06 15:45:46 +06:00
Nathan Hjelm
14b36d4503 btl/ugni: protect against re-entry and races in connections 
This commit fixes two issues that can occur during a connection:

 - Re-entry to connection progress from modex lookup. Added an
   additional endpoint state that will keep the code from re-entering
   the common endpoint create.

 - Fixed a race between a process posting a directed datagram through
   a send and a connection being progressed through opal_progress().
   The progress code was not obtaining the endpoint lock before
   attempting to update the endpoint. To limit the amount of code
   changed for 2.0.1 this commit makes the endpoint lock recursive. In
   a future update this may be changed.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-08-04 16:08:01 -06:00
Jeff Squyres
c42d8867e6 Merge pull request #1925 from jsquyres/pr/warnings-fixes 
hwloc: fix Valgrind warning
 2016-08-04 08:48:50 -07:00
Jeff Squyres
36555b7a1d Merge pull request #1933 from thananon/fix_random 
Make libevent use internal random
 2016-08-04 08:27:56 -07:00
Boris Karasev
9d6a4b3b2d configury/libevent: fix incorrect drop of OPAL_HAVE_WORKING_EVENTOPS 
Fixes PR https://github.com/open-mpi/ompi/pull/1687
The code that sets OPAL_HAVE_WORKING_EVENTOPS for internal libevent
was executed even if the external libevent component was configured.

As the result libevent progress wasn't called in opal_progress which
for example caused ring_c to hang when pml/ob1 was used.
 2016-08-04 16:37:37 +06:00
Gilles Gouaillardet
30f98cd9d0 pmix: redefine OPAL_PMIX_ARCH macro 
Architecture is set by the ompi layer *after* job startup, so the key cannot
have the "pmix" prefix since optimizations in open-mpi/ompi@01a653d50a
otherwise architecture cannot be retrieved
 2016-08-04 13:31:28 +09:00
Thananon Patinyasakdikul
b3e9dadff2 libevent: use opal_random() instead of rand(3) 
This commits changed rand(3) and family in libevent to use internal
random function provided in opal to prevent pertubing user's random seed.

Fixes open-mpi/ompi#1877
 2016-08-03 09:18:12 -07:00
Howard Pritchard
08266a1a56 mpool/hugepage mntent intro fallout 
On Cray, PR #1846 introduced a double free
situation which led to all kinds of random memory
corruption problems.

This commit fixes this problem.

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-08-02 05:52:31 -05:00
Jeff Squyres
7bea563e02 hwloc: fix Valgrind warning 
Cherry picked from open-mpi/hwloc@d4565c351e

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-08-01 18:50:40 -07:00
Gilles Gouaillardet
21e7f31dbe pmix2x: fix unpack sequence in PMIx_Get callback 
first unpack the nspace (PMIX_STRING) before unpacking the various keys (PMIX_KVAL)
 2016-08-01 14:21:22 +09:00
Howard Pritchard
477f6cb6a8 Merge pull request #1846 from ggouaillardet/topic/mntent 
mpool/hugepage: set mntent API instead of manually parsing /proc/mounts
 2016-07-31 20:17:37 -06:00