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270 Коммитов

Автор SHA1 Сообщение Дата
Howard Pritchard
f136a20cae
Merge pull request #6578 from hppritcha/topic/thread_framework2
Implement a MCA framework for threads
2020-03-27 15:55:48 -06:00
Noah Evans
ee3517427e Add threads framework
Add a framework to support different types of threading models including
user space thread packages such as Qthreads and argobot:

https://github.com/pmodels/argobots

https://github.com/Qthreads/qthreads

The default threading model is pthreads.  Alternate thread models are
specificed at configure time using the --with-threads=X option.

The framework is static.  The theading model to use is selected at
Open MPI configure/build time.

mca/threads: implement Argobots threading layer

config: fix thread configury

- Add double quotations
- Change Argobot to Argobots
config: implement Argobots check

If the poll time is too long, MPI hangs.

This quick fix just sets it to 0, but it is not good for the
Pthreads version. Need to find a good way to abstract it.

Note that even 1 (= 1 millisecond) causes disastrous performance
degradation.

rework threads MCA framework configury

It now works more like the ompi/mca/rte configury,
modulo some edge items that are special for threading package
linking, etc.

qthreads module
some argobots cleanup

Signed-off-by: Noah Evans <noah.evans@gmail.com>
Signed-off-by: Shintaro Iwasaki <siwasaki@anl.gov>
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-03-27 10:15:45 -06:00
Ralph Castain
33ab928e1b ompi_proc_t size reduction: part 1
We currently save the hostname of a proc when we create the ompi_proc_t for it. This was originally done because the only method we had for discovering the host of a proc was to include that info in the modex, and we had to therefore store it somewhere proc-local. Obviously, this ccarried a memory penalty for storing all those strings, and so we added a "cutoff" parameter so that we wouldn't collect hostnames above a certain number of procs.

Unfortunately, this still results in an 8-byte/proc memory cost as we have a char* pointer in the opal_proc_t that is contained in the ompi_proc_t so that we can store the hostname of the other procs if we fall below the cutoff. At scale, this can consume a fair amount of memory.

With the switch to relying on PMIx, there is no longer a need to cache the proc hostnames. Using the "optional" feature of PMIx_Get, we restrict the retrieval to be purely proc-local - i.e., we retrieve the info either via shared memory or from within the proc-internal hash storage (depending upon the active PMIx components). Thus, the retrieval of a hostname is purely a local operation involving no communication.

All RM's are required to provide a complete hostname map of all procs at startup. Thus, we have full access to all hostnames without including them in a modex or having to cache them on each proc. This allows us to remove the char* pointer from the opal_proc_t, saving us 8-bytes/proc.

Unfortunately, PMIx_Get does not currently support the return of a static pointer to memory. Thus, even though PMIx has the hostname in its memory, it can only return a malloc'd version of it. I have therefore ensured that the return from opal_get_proc_hostname is consistently malloc'd and free'd wherever used. This shouldn't be a burden as the hostname is only used in one of two circumstances:

(a) in an error message
(b) in a verbose output for debugging purposes

Thus, there should be no performance penalty associated with the malloc/free requirement. PMIx will eventually be returning static pointers, and so we can eventually simplify this method and return a "const char*" - but as noted, this really isn't an issue even today.

Signed-off-by: Ralph Castain <rhc@pmix.org>
2020-03-23 12:49:44 -07:00
bosilca
c4d36859ec
Merge pull request #7228 from devreal/progress-returns
Harmonize return values of progress callbacks
2020-02-28 20:15:37 -05:00
Gilles Gouaillardet
174e967dbc
Remove ORTE project
Will be replaced by PRRTE. Ensure that OMPI and OPAL layers build
without reference to ORTE. Setup opal/pmix framework to be static.
Remove support for all PMI-1 and PMI-2 libraries. Add support for
"external" pmix component as well as internal v4 one.

remove orte: misc fixes

 - UCX fixes
 - VPATH issue
 - oshmem fixes
 - remove useless definition
 - Add PRRTE submodule
 - Get autogen.pl to traverse PRRTE submodule
 - Remove stale orcm reference
 - Configure embedded PRRTE
 - Correctly pass the prefix to PRRTE
 - Correctly set the OMPI_WANT_PRRTE am_conditional
 - Move prrte configuration to the end of OMPI's configure.ac
 - Make mpirun a symlink to prun, when available
 - Fix makedist with --no-orte/--no-prrte option
 - Add a `--no-prrte` option which is the same as the legacy
   `--no-orte` option.
 - Remove embedded PMIx tarball. Replace it with new submodule
   pointing to OpenPMIx master repo's master branch
 - Some cleanup in PRRTE integration and add config summary entry
 - Correctly set the hostname
 - Fix locality
 - Fix singleton operations
 - Fix support for "tune" and "am" options

Signed-off-by: Ralph Castain <rhc@pmix.org>
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: Joshua Hursey <jhursey@us.ibm.com>
2020-02-07 18:20:06 -08:00
George Bosilca
72501f8f9c Consistent return from all progress functions.
This fix ensures that all progress functions return the number of
completed events.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2020-01-28 20:16:53 +01:00
Howard Pritchard
5a3646fd1d
Merge pull request #6884 from guserav/reintroduce-common-ofi
Reintroduce common ofi
2019-08-23 13:12:25 -06:00
Sergey Oblomov
182023febb SPML/UCX: fixed hang in SHMEM_FINALIZE
- used MPI _Barrier to synchronize processes

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-08-21 12:04:46 +03:00
guserav
56c3d9a238 common/ofi: Set HPE as owner of component
Signed-off-by: guserav <erik.zeiske@web.de>
2019-08-20 10:13:02 -07:00
guserav
8a67a95c99 common/ofi: Fix open-mpi/ompi#2519
As discussed in open-mpi/ompi#2519 the common component does not depend
on libfabric yet. This commit introduces this dependency by just calling
fi_version().

Signed-off-by: guserav <erik.zeiske@hpe.com>
2019-08-12 16:17:59 -07:00
guserav
0e25c95eae common/ofi: Fix check for OFI in build files
The changes made in f5e1a672cc
have been done after the common/ofi component was removed and thus the
component doesn't reflect the changes made their.

Namely f5e1a672cc changed:
- How to call OPAL_CHECK_OFI (It sets opal_ofi_happy to yes now)
- Dropped the common part in the build flags for ofi

Signed-off-by: guserav <erik.zeiske@web.de>
2019-08-12 16:15:23 -07:00
guserav
4ad78aaa15 Revert "Remove opal/mca/common/ofi."
This reverts commit dd20174532.

Signed-off-by: guserav <erik.zeiske@web.de>
2019-08-09 10:33:21 -07:00
Sergey Oblomov
43186e494b UCX: added PPN hint for UCX context
- added PPN hint for UCX context init

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-08-05 18:07:06 +03:00
Sergey Oblomov
ebc457baf5 COMMON/UCX: removed ucs stuff
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-05-16 20:56:30 +03:00
Sergey Oblomov
a0a9306066 COMMON/UCX: init memhooks infra on external hooks only
- initialize memory hooks infrastructure only in case
  if external memory hooks are requested

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-05-16 20:13:16 +03:00
Mikhail Brinskii
2ef5bd8b36 SPML/UCX: Add shmemx_alltoall_global_nb routine to shmemx.h
The new routine transfers the data asynchronously from the source PE to all
PEs in the OpenSHMEM job. The routine returns immediately. The source and
target buffers are reusable only after the completion of the routine.
After the data is transferred to the target buffers, the counter object
is updated atomically. The counter object can be read either using atomic
operations such as shmem_atomic_fetch or can use point-to-point synchronization
routines such as shmem_wait_until and shmem_test.

Signed-off-by: Mikhail Brinskii <mikhailb@mellanox.com>
2019-04-26 14:47:58 +03:00
Xin Zhao
9c3d00b144 ompi/oshmem/spml/ucx: use lockfree array to optimize spml_ucx_progress/delete oshmem_barrier in shmem_ctx_destroy
ompi/oshmem/spml/ucx: optimize spml ucx progress

Signed-off-by: Tomislav Janjusic <tomislavj@mellanox.com>
2019-03-21 23:01:45 +02:00
Xin Zhao
e1c1ab0202 ompi/oshmem/spml/ucx: defer clean up shmem_ctx to shmem_finalize
Signed-off-by: Tomislav Janjusic <tomislavj@mellanox.com>
2019-03-21 23:01:37 +02:00
Sergey Oblomov
c319cf9ade COMMON/UCX: rewording of hooks suggestion
- also updated output macro

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-03-14 11:00:57 +02:00
Sergey Oblomov
d8e3562bae PML/SPML/UCX: added evaluation of mmap events
- there was a set of UCX related issues reported which caused
  by mmap API hooks conflicts. We added diagnostic of such
  problems to simplify bug-resolving pipeline

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2019-03-12 21:14:27 +02:00
Artem Polyakov
91d6115d99 opal/common/ucx: Adjust the threasholds for periodical flushes
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
3aadc2b5e1 opal/common/ucx: Fix periodical flush in the worker pool
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
84dfe1277c opal/common/ucx: Rename wpool recv_worker to dflt_worker
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
8a990c2b64 opal/common/ucx: Add comments clarifying data structures
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
19e2ae2efb opal/common/ucx: Switch to opal/tsd
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
7984d7d997 opal/common/ucx: Remove unused debugging macro
Will be reintroduced later if needed and after adaptation to the OMPI
infrastructure.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
43f16d8796 opal/common/ucx: Remove common_ucx_int.h
Place the content of common_ucx_int.h back to the common_ucx.h and
include common_ucx_wpool.h explicitly.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
bb7d360621 opal/common/ucx: add refcnt in tlocal_ctx_tbl entry to keep track of usage
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
101036651b opal/common/ucx: Fix the bug in wpool's periodical flush
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
bcb52ecade opal/common/ucx: add winfo ptr into req
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
33517428a1 opal/common/ucx: add periodical flush and counter to opal directory.
Signed-off-by: Xin Zhao <xinz@mellanox.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
1fa7054041 opal/common/ucx: use trylock in opal_common_progress
Signed-off-by: Xin Zhao <xinz@mellanox.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
2d3cffe1a3 opal/common/ucx: replace opal_mutex_t with opal_recursive_mutex_t
Signed-off-by: Xin Zhao <xinz@mellanox.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
aa26a724ed opal/common/ucx: introduce internal UCX request in wpool.
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
07cb4134be opal/common/ucx: Set of bug fixes in wpool
Signed-off-by: Xin Zhao <xinz@mellanox.com>
2019-02-19 14:22:07 -08:00
Xin Zhao
344bb641a1 opal/common/ucx: Minor changes in wpool
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
9fb9cfbe8e opal/common/ucx: Simplify Worker Pool TLS structure
Get rid of unneeded context and memory region identifiers

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:07 -08:00
Artem Polyakov
1e7bf7085d opal/common/ucx: Improve/fix debug output macro's
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Artem Polyakov
fd98ee14eb opal/common/ucx: Code cleanup
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Artem Polyakov
f38c9f3e5f opal/common/ucx: Simplify Worker Pool memory handler
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Artem Polyakov
6b7acdf21f opal/common/ucx: Somplify Worker Pool context management
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Xin Zhao
8b7fa927ba opal/common/ucx: Add fetch primitives to wpool
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Xin Zhao
bfbf818fe1 opal/common/ucx: Complete initialization of the Worker Pool
Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Artem Polyakov
e28fadb048 opal/common/ucx: Introduce Worker Pool (wpool) functionality
Worker Pool is an object containing/managing a set of UCX workers
and providing access to those workers through a smal interface
to allow Multi-Threaded applicatoins to access multiple HW contexts.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
2019-02-19 14:22:06 -08:00
Jeff Squyres
dd20174532 Remove opal/mca/common/ofi.
It never lived up to its purpose (and has caused amorphous indirect
errors such as https://github.com/open-mpi/ompi/issues/2519), so
delete it.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-02-07 06:29:58 -08:00
Jeff Squyres
3f4af8e51c opal/common: remove stale common components
The verbs and verbs_usnic components are now no longer necessary / no
longer used anywhere in the code base.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-02-07 05:36:06 -08:00
Yossi Itigin
83cca9d52a ucx: add owner.txt for components
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-12-01 17:14:03 +02:00
Sergey Oblomov
1099d5f023 COMMON/UCX: added error code to log output
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-21 11:37:25 +03:00
Sergey Oblomov
df765595e3 COMMON/UCX: suppressed coverity warnings
- suppressed coverity warnings - added log messages on failed calls

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-17 16:11:03 +03:00
Brian Barrett
e9e4d2a4bc Handle asprintf errors with opal_asprintf wrapper
The Open MPI code base assumed that asprintf always behaved like
the FreeBSD variant, where ptr is set to NULL on error.  However,
the C standard (and Linux) only guarantee that the return code will
be -1 on error and leave ptr undefined.  Rather than fix all the
usage in the code, we use opal_asprintf() wrapper instead, which
guarantees the BSD-like behavior of ptr always being set to NULL.
In addition to being correct, this will fix many, many warnings
in the Open MPI code base.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-08 16:43:53 -07:00