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Граф коммитов

3637 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
f22b7d4f46 hwloc/external.h: fix a clash with external HWLOC_VERSION[*]
Some macros defined by the embedded hwloc ends up in opal_config.h
because hwloc configury m4 files are slurped into Open MPI.  These
macros are not required here, and they might conflict with an external
hwloc install, so simply #undef them in hwloc/external/external.h
after including <opal_config.h> but before including the external
<hwloc.h>.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2019-01-29 07:36:01 -08:00
Nathan Hjelm
fe5d5c75f9
Merge pull request #6279 from hjelmn/ompi_memory_usage
mpool: add new base module type "basic"
2019-01-15 09:48:38 -07:00
Nathan Hjelm
f62d26ddbc btl/vader: use basic mpool type to handle frag/fbox allocation
This commit updates btl/vader to use an mpool for handling all shared
memory allocations (frags, fboxes).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2019-01-14 15:54:16 -07:00
Nathan Hjelm
6ffc7cc96c mpool: add new base module type "basic"
This commit adds a new mpool base module type: basic. This module can
be used with an opal_free_list_t to allocate space from a
pre-allocated block (such as a shared memory region). The new module
only supports allocation and is not meant for more dynamic use cases
at this time.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2019-01-14 15:48:46 -07:00
Ralph Castain
1e70ea73f4 Update to latest PMIx master (v4.0)
Update the OPAL glue configure code to correctly link the opal/pmix4
component to the hwloc used by OMPI instead of defaulting to the
system-level hwloc. Required a corresponding update to the PMIx hwloc
configure code so we treat hwloc the same way we handle libevent in
embedded scenarios.

Signed-off-by: Ralph Castain <rhc@pmix.org>
2019-01-10 09:37:56 -08:00
Gilles Gouaillardet
950ba16aa1 pmix/ext3x: fix support for external PMIx v3.1
The PMIX_MODEX and PMIX_INFO_ARRAY macros were removed from the PMIx 3.1 standard.
Open MPI does not really need them (they are only used to be reported as not supported),
so smply #ifdef protect them to support an external PMIx v3.1

Refs. open-mpi/ompi#6247

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-01-08 10:11:05 +09:00
Nathan Hjelm
edaf08bf6d btl/vader: minor correction to match ompi coding style
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2019-01-07 14:24:58 -07:00
Nathan Hjelm
30b8336cb4 btl/vader: don't try to set reachabilty in add_procs if not requested
This commit fixes a bug where add_procs can incorrectly return an
error when going through the dynamic add_procs path. This doesn't
happen normally, only when pml/ob1 is not in use.

References #6201

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2019-01-07 13:00:48 -07:00
Gilles Gouaillardet
78fffa25f2 mpool/hugepage: plug a memory leak
Refs. open-mpi/ompi#6242

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2019-01-07 11:50:40 +09:00
Howard Pritchard
ee26ed9e8f
Merge pull request #6214 from heasterday/topic/fixmpool
Update mpool_hugepage_component.c
2019-01-02 16:24:39 -07:00
Gilles Gouaillardet
0203531695 pmix/pmi4x: refresh to latest PMIx
refresh to pmix/pmix@fae0ee7d94

Refs. open-mpi/ompi#6228

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-28 12:57:57 +09:00
Hunter Easterday
509380d99f Fix white extra whitespace
Signed-off-by: Hunter Easterday <heasterday@lanl.gov>
2018-12-20 14:32:10 -07:00
heasterday
ad0d2c451e Update mpool_hugepage_component.c
Signed-off-by: Hunter Easterday <heasterday@lanl.gov>
2018-12-20 14:28:19 -07:00
Gilles Gouaillardet
b0a668457c pmix/pmi4x: refresh to latest PMIx
refresh to pmix/pmix@2d4c2874fd

Refs. open-mpi/ompi#6222

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-18 17:11:01 +09:00
Nathan Hjelm
4944508603
Merge pull request #6136 from hjelmn/opal_cleanup
opal: clean up init/finalize
2018-12-18 15:23:32 -07:00
Nathan Hjelm
0edfd328f8 opal: clean up init/finalize
This commit contains the following changes:

 - Remove the unused opal_test_init/opal_test_finalize
   functions. These functions are not used by anything in the code
   base or MTT. Tests use opal_init_util/opal_finalize_util instead.

 - Get rid of gotos in opal_init_util and opal_init. Replaced them
   with a cleaner solution.

 - Automatically register cleanup functions in init functions. The
   cleanup functions are executed in the reverse order of the
   initialization functions. The cleanup functions are run in
   opal_finalize_util() before tearing down the class system.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-18 14:37:04 -07:00
Ralph Castain
ece7696c2c Fix external PMIx v3 support
Don't erase the source files during "make clean"!

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-12-17 15:54:56 -08:00
Gilles Gouaillardet
b89deeb1bb btl/uct: fix a typo in configure.m4
remove whitespace around '=' when setting btl_uct_LIBS

Thanks Ake Sandgren for reporting this

Refs. open-mpi/ompi#6173

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-11 14:23:53 +09:00
Gilles Gouaillardet
78aa6fdd1d btl/uct: fix a warning
Use the PRIsize_t macro to correctly print a size_t

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-12-07 16:16:35 +09:00
Nathan Hjelm
e07a64c52d btl/uct: fix some issues when using UCX over ugni
Though not a recommended configuration it is possible to use Open MPI
over UCX over uGNI. This configuration had some issues related to the
connection management and tl selection. This commit fixes those
issues.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-12-05 16:30:54 -07:00
Gilles Gouaillardet
fccb3e7514
Merge pull request #6137 from ggouaillardet/topic/ucx_warning
btl/openib: delay UCX warning to add_procs()
2018-12-05 11:50:10 +09:00
Yossi Itigin
83cca9d52a ucx: add owner.txt for components
Signed-off-by: Yossi Itigin <yosefe@mellanox.com>
2018-12-01 17:14:03 +02:00
Gilles Gouaillardet
0a2ce58040 btl/openib: delay UCX warning to add_procs()
If UCX is available, then pml/ucx will be used instead of
pml/ob1 + btl/openib, so there is no need to warn about
btl/openib not supporting Infiniband.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-11-29 16:20:55 +09:00
Ralph Castain
f609542bbf Implement process set name support
Add the --pset option for app_contexts so the user can provide a string
name for each app_context. Use the new PMIx pset attribute to store the
names in the PMIx local storage for retrieval

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
2018-11-27 11:07:58 -08:00
KAWASHIMA Takahiro
cacd6f389c datatype: Remove #if HAVE_[TYPE] for C99 types
Now Open MPI requires a C99 compiler. Checking availability of
the following types is no more needed.

- `long long` (`signed` and `unsigned`)
- `long double`
- `float _Complex`
- `double _Complex`
- `long double _Complex`

Furthermore, the `#if HAVE_[TYPE]` style checking is not correct.
Availability of C types is checked by `AC_CHECK_TYPES` in `configure.ac`.
`AC_CHECK_TYPES` defines macro `HAVE_[TYPE]` as `1` in `opal_config.h`
if the `[TYPE]` is available. But it does not define `HAVE_[TYPE]`
(instead of defining as `0`) if it is not available. So even if we
need `HAVE_[TYPE]` checking, it should be `#if defined(HAVE_[TYPE])`.

I didn't remove `AC_CHECK_TYPES` for these types in `configure.ac`
since someone may use `HAVE_[TYPE]` macros somewhere.

Signed-off-by: KAWASHIMA Takahiro <t-kawashima@jp.fujitsu.com>
2018-11-14 09:32:52 +09:00
Thananon Patinyasakdikul
d9bd54c628 btl/ofi: fixed compiler warning on OSX.
This commit closes #6049

Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
2018-11-06 15:37:25 -05:00
Howard Pritchard
8126779a35 btl/openib: fix a problem with ib query
Under certain circumstances, ibv_exp_query_device was
returning an error due to uninitialized fields in the
extended attributes struct.

Fixes: #5810
Fixes: #5914

Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-10-31 14:50:15 -06:00
Brian Barrett
a1e85b03aa btl tcp: Fix compile error in IPv6
In 457f058 I broke the TCP BTL with --enable-ipv6.  This patch
fixes the compile error, so IPv6 works again.

Fixed #5996

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-30 12:31:04 -07:00
Gilles Gouaillardet
b205039205 event/external: fix version requirement
Only default to the external component if its version is
greater or equal than the internal libevent (2.0.22)

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-29 10:12:56 +09:00
Gilles Gouaillardet
35e77a286c event/external: misc configury fixes
- Always use the external component when configure'd with --with-libevent=external
 - Fix the external libevent library version detection
   by testing _EVENT_NUMERIC_VERSION and EVENT__NUMERIC_VERSION macros
 - Use the event2/event.h header (event.h is deprecated since libevent 2.0

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-29 10:12:56 +09:00
Aurelien Bouteiller
f2e6d7891e
Merge pull request #5975 from ICLDisco/export/pmix-fini-threadinterlock
Avoid a double lock interlock when calling pmix_finalize
2018-10-26 10:01:23 -04:00
Gilles Gouaillardet
b715dd2657 btl/uct: fix AC_CHECK_DECLS usage
AC_CHECK_DECLS take a comma separated list of macros/symbols,
so replace the whitespace separator with a comma.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
2018-10-26 15:36:02 +09:00
Aurelien Bouteiller
50cf707f3f
Avoid a double lock interlock when calling pmix_finalize
Signed-off-by: Aurelien Bouteiller <bouteill@icl.utk.edu>
2018-10-25 16:36:58 -04:00
Nathan Hjelm
7b34c9b3fe
Merge pull request #5958 from hjelmn/btl_uct_sync
btl/uct: update for UCT_CB_FLAG_SYNC removal
2018-10-22 23:17:27 -06:00
Yossi Itigin
4c442f2601
Merge pull request #5934 from hoopoepg/topic/suppressed-cov-warn-added-log-msg
COMMON/UCX: suppressed coverity warnings
2018-10-22 11:00:47 +03:00
Nathan Hjelm
1b37328ba8 btl/uct: update for UCT_CB_FLAG_SYNC removal
Signed-off-by: Nathan Hjelm <hjelmn@me.com>
2018-10-21 18:57:42 -06:00
bosilca
690024917d
Merge pull request #5938 from bwbarrett/bugfix/tcp-multi-address
Always use same IP address for module and modex
2018-10-21 09:19:43 -07:00
Sergey Oblomov
1099d5f023 COMMON/UCX: added error code to log output
Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-21 11:37:25 +03:00
George Bosilca
dc972f0b92
Fix the PML monitoring.
The monitoring PML hides it's existence from the OMPI infrastructure by
removing itself from the list of PML loaded components, remaining hidden
until MPI_Finalize.

Signed-off-by: George Bosilca <bosilca@icl.utk.edu>
2018-10-18 00:29:23 -04:00
Brian Barrett
457f058e73 btl tcp: Simplify modex address selection
Simplify selection of the address to publish for a given BTL TCP
module in the module exchange code.  Rather than looping through
all IP addresses associated with a node, looking for one that
matches the kindex of a module, loop over the modules and
use the address stored in the module structure.  This also
happens to be the address that the source will use to bind()
in a connect() call, so this should eliminate any confusion
(read: bugs) when an interface has multiple IPs associated with
it.

Refs #5818

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-18 02:23:21 +00:00
Howard Pritchard
6564d3d217 remove some dead crs components
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-10-17 10:29:00 -06:00
Brian Barrett
4f19221af2 btl tcp: Simplify module address storage
Today, a btl tcp module is associated with exactly one IP
address (IPv4 or IPv6).  There's no need to reserve space
for both an IPv4 and IPv6 address in the module structure,
since the module will only be associated with one or the
other.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-17 16:21:17 +00:00
Sergey Oblomov
df765595e3 COMMON/UCX: suppressed coverity warnings
- suppressed coverity warnings - added log messages on failed calls

Signed-off-by: Sergey Oblomov <sergeyo@mellanox.com>
2018-10-17 16:11:03 +03:00
Brian Barrett
2acc4b7e7f btl tcp: Add workaround for "dropped connection" issue
Work around a race condition in the TCP BTL's proc setup code.
The Cisco MTT results have been failing on TCP tests due to a
"dropped connection" message some percentage of the time.
Some digging shows that the issue happens in a combination of
multiple NICs and multiple threads.  The race is detailed in
https://github.com/open-mpi/ompi/issues/3035#issuecomment-429500032.

This patch doesn't fix the race, but avoids it by forcing
the MPI layer to complete all calls to add_procs across the
entire job before any process leaves MPI_INIT.  It also
reduces the scalability of the TCP BTL by increasing start-up
time, but better than hanging.

The long term fix is to do all endpoint setup in the first
call to add_procs for a given remote proc, removing the
race.  THis patch is a work around until that patch can
be developed.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-16 18:33:30 -07:00
Nathan Hjelm
37a3f32e47
Merge pull request #5913 from hjelmn/uct_btl_fixes
btl/uct: fix deadlock in connection code
2018-10-16 19:11:54 -06:00
Nathan Hjelm
707d35deeb btl/uct: fix deadlock in connection code
This commit fixes a deadlock that can occur when using a TL that
supports the connect to endpoint model. The deadlock was occurring
while processing an incoming connection requests. This was done from
an active-message callback. For some unknown reason (at this time)
this callback was sometimes hanging. To avoid the issue the connection
active-message is saved for later processing.

At the same time I cleaned up the connection code to eliminate
duplicate messages when possible.

This commit also fixes some bugs in the active-message send path:

 - Correctly set all fragment fields in prepare_src.

 - Fix bug when using buffered-send. We were not reading the return
   code correctly (which is in bytes). This resulted in a message
   getting sent multiple times.

 - Don't try to progress sends from the btl_send function when in an
   active-message callback. It could lead to deep recursion and an
   eventual crash if we get a trace like
   send->progress->am_complete->ob1_callback->send->am_complete...

Closes #5820
Closes #5821

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2018-10-16 18:28:47 -06:00
Brian Barrett
da1189d771
Merge pull request #5916 from bwbarrett/revert/6acebc4
Revert "Handle error cases in TCP BTL"
2018-10-16 13:54:18 -07:00
Jeff Squyres
cef6cf0ac5 opal: update some string handling
Make various string handling locations a little more robust.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2018-10-14 16:04:28 -07:00
Brian Barrett
5162011428 Revert "Handle error cases in TCP BTL"
This reverts commit 6acebc40a1.

This patch is causing numerous "Socket closed" messages which are
causing most of the failures on Cisco's MTT run.  See
https://github.com/open-mpi/ompi/issues/5849 for more information.

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-12 15:01:54 -07:00
Brian Barrett
8feff49f6c pmix: Fix filename typo
Looks like a filename was missed when pmix sucked in the installdirs
framework.  Fixing the typo fixes "make ctags" and "make cscope".

Signed-off-by: Brian Barrett <bbarrett@amazon.com>
2018-10-12 17:05:01 +00:00