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Граф коммитов

3477 Коммитов

Автор SHA1 Сообщение Дата
rhc54
adbff46a13 Merge pull request #642 from rhc54/topic/hwloc
Update hwloc to 1.11.0
2015-06-13 12:09:58 -07:00
Ralph Castain
ff92781ec4 Replace hwloc191 with hwloc1110
Fix hwloc compile. Ignore LAMA mapper due to deprecated hwloc functions
2015-06-13 10:11:45 -07:00
Jeff Squyres
4384131e65 openib: minor style and defensive programming fixes
Minor comment/whitespace fixes.  Also some minor logic changes that
are mainly for defensive programming purposes (i.e., ensure to always
set malloc_hook_set to true or false, and then check it before we try
to actually invoke it).
2015-06-12 20:11:47 -07:00
Jeff Squyres
2f137ff151 openib: reset memalign threshhold properly
Now that open-mpi/ompi#638 is fixed, reset the openib BTL memalign
threshhold properly.

This effectively re-instates commit
open-mpi/ompi@ce915b5757.
2015-06-12 20:11:47 -07:00
Jeff Squyres
88c13adc8c openib: only set the memory hook if it is enabled
Instead of unconditionally setting the memory hook, only set it when
the memory hooks are both available and have been enabled (e.g.,
opal/mca/memory/linux has decided that it *can* be enabled, and when
the mpi_leave_pinned MCA param is set to 1, or is set to -1 and some
component requested the memory hooks be enabled).

If we set the memory hook when memory hooks are not enabled,
__malloc_hook will be NULL, which will cause problems when
btl_openib_malloc_hook() tries to invoke it.

Fixes open-mpi/ompi#638.
2015-06-12 20:11:47 -07:00
Ralph Castain
12d3c9ca22 Revert "Fix a typo that incorrectly set the alignment threshold in the openib BTL."
This reverts commit ce915b5757.
2015-06-10 14:02:49 -07:00
Gilles Gouaillardet
8885b34637 mca/base: fix a misc memory leak
as reported by Coverity with CID 1294415
2015-06-10 15:10:57 +09:00
Gilles Gouaillardet
9e278a21ce opal/crs: fix a string overflow
and revamp out of resource handling
fixes resource leak as reported by Coverity with CID 1304752
2015-06-10 14:23:25 +09:00
Nathan Hjelm
6772d32b85 opal/crs: silence clang warnings introduced by coverity fixes
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-06-08 09:16:13 -06:00
Gilles Gouaillardet
bcdb2d1380 add missing #include
sscanf requires stdio.h
fixes commit open-mpi/ompi@6ca57724c4
2015-06-08 09:13:11 +09:00
Jeff Squyres
4b59be4e4c btl tcp: cosmetic changes and updates
No logic changes.

Update some stale/incorrect comments, fix some indenting and style.
2015-06-06 10:17:20 -07:00
Jeff Squyres
d164fe9bc5 opal_params.c: fix typo in comment 2015-06-06 10:17:20 -07:00
Jeff Squyres
0acec2b676 opal/util/net.c: remove stale comment
Also wrap a long "if" statement -- but make no code logic changes.
2015-06-06 10:17:20 -07:00
Jeff Squyres
6ca57724c4 opal/util/net.c: remove superflous #include 2015-06-06 10:17:20 -07:00
Jeff Squyres
cddc8945e0 btl_tcp_proc.c: add missing "continue"
Also add another (superflous but symmetric) continue statement.

This missing "continue" statement allows IPv4 "private network"
matches to fall through and allow IPv6 matches to be made -- thereby
overriding the IPv4 match that was already made.

Fixes #585 (although several of the other issues identified on #585
still exist, the primary / initial bug that was reported there is now
fixed).
2015-06-06 10:17:12 -07:00
Ralph Castain
d9f23627fd Add in hwloc 1.11.0rc1 - will overwrite with final version 2015-06-04 15:35:56 -07:00
Rolf vandeVaart
8622b34664 Check for GPU Direct RDMA and leave pinned turned off 2015-06-04 14:25:24 -04:00
Nathan Hjelm
f72b6d45c7 crs/none: fix coverity issues
CID 1301389 Resource leak (RESOURCE_LEAK)

There is no conceivable reason to strdup cr_argv[0] in either
location. Removed the calls to strdup.

CID 741357 Resource leak (RESOURCE_LEAK)

cr_argv was created by opal_argv_split (tmp_argv[0], ' '). Why should
we call opal_argv_join (' ') on this array. Leak fixed by printing out
tmp_argv[0] instead of calling opal_argv_join.

CID 741358 Resource leak (RESOURCE_LEAK)

The code does not handle exec failure correctly. The error should be
communicated to the parent process but the function in question is
only called by the parent. This calls into question some of the
structure of the function in general (like what is the point of
returning the child process id). That said, I will go ahead and add
the opal_argv_free to quiet this error.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-06-01 16:00:51 -06:00
Nathan Hjelm
7e34997746 event/libevent2022: fix coverity issue
CID 1269841 Out-of-bounds access (OVERRUN)

Correct issue. If the string being concatingated fills the remaining
buffer then a \0 is written past the end of the string. In practice
this should never happen but it should be fixed. I re-organized the
code a bit to clear this error.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-06-01 15:38:54 -06:00
Ralph Castain
ea35e47228 Fat SMPs (i.e., systems with nodes containing large numbers of cpus) were failing to start due to connection failures of the opal/pmix support. Root cause was that (a) we were setting the client socket to non-blocking before calling connect, and (b) the server was using the event library to harvest the accepts, and also did the handshake while in that event. So the server would backup beyond the connection backlog limit, and we would fail.
Changing the client to leave its socket as blocking during the connect doesn't solve the problem by itself - you also have to introduce a sleep delay once the backlog is hit to avoid simply machine-gunning your way thru retries. This gets somewhat difficult to adjust as you don't want to unnecessarily prolong startup time.

We've solved this before by adding a listening thread that simply reaps accepts and shoves them into the event library for subsequent processing. This would resolve the problem, but meant yet another daemon-level thread. So I centralized the listening thread support and let multiple elements register listeners on it. Thus, each daemon now has a single listening thread that reaps accepts from multiple sources - for now, the orte/pmix server and the oob/usock support are using it. I'll add in the oob/tcp component later.

This still didn't fully resolve the SMP problem, especially on coprocessor cards (e.g., KNC). Removing the shared memory dstore support helped further improve the behavior - it looks like there is some kind of memory paging issue there that needs further understanding. Given that the shared memory support was about to be lost when I bring over the PMIx integration (until it is restored in that library), it seemed like a reasonable thing to just remove it at this point.
2015-05-29 14:37:14 -07:00
Nathan Hjelm
7b7993e406 pmix/base: fix coverity issue
CID 1269707 Logically dead code (DEADCODE)

Coverity is correct that tmp3 can never be NULL here. Deleted the dead
code.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 09:02:56 -06:00
Nathan Hjelm
1d27b1f944 pmix/native: fix coverity issue
CID 1269730 Dereference after null check (FORWARD_NULL)

The code checked for cb == NULL before checking for a callback
function but did not have the same protection around the
OBJ_RELEASE(cb).

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 08:48:15 -06:00
Nathan Hjelm
5e2bc2c662 btl/openib: fix coverity issue
CID 1269821 Dereference null return value (NULL_RETURNS)

This is another false positive that can be silenced by looping on
opal_list_remove_first instead of using both opal_list_is_empty and
opal_list_remove_first.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 08:44:03 -06:00
Nathan Hjelm
65472a383f mca/base: add yes/no as valid values for boolean variables
This commit expands the set of accepted values for boolean values to
include yes/no as synonyms for 1/0.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-29 08:41:51 -06:00
Nathan Hjelm
0d763ea0bc Merge pull request #611 from hjelmn/opal_coverity
btl/openib: more coverity fixes
2015-05-28 13:01:37 -06:00
Nathan Hjelm
b038eb6434 btl/openib: more coverity fixes
CID 1301390 Dereference before null check (REVERSE_INULL)

endpoint can not be NULL here. Remove NULL check.

CID 1269836 Unintentional integer overflow (OVERFLOW_BEFORE_WIDEN)
CID 1301388 Bad bit shift operation (BAD_SHIFT)

Add ull to integer constants to ensure the math is done in 64-bits not
32.

CID 715749 Explicit null dereferenced (FORWARD_NULL)

As far as I can tell this parser function does not accept a line that
does match key = value. If that is the case then value should never be
NULL. If it is it is a parse error. Updated the code to reflect
this. Also modified the intify function to do something more sane
(strtol vs atoi with hex detection).

CID 1269820 Dereference null return value (NULL_RETURNS)

This is a false positive as strchr will never return NULL here. It
makes sense, though, to quiet the warning by changing the do {} while
() loop to a while () loop.

CID 1269780 Dereference after null check (FORWARD_NULL)

Just return an error if the endpoint's cpc data is NULL.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 11:58:17 -06:00
Nathan Hjelm
9c170a8c00 Merge pull request #608 from hjelmn/opal_coverity
Opal coverity fixes
2015-05-28 09:06:31 -06:00
Nathan Hjelm
ceb319170a btl/openib: fix more coverity issues
CID 1269674 Ignoring number of bytes read (CHECKED_RETURN)

Check that we read enough bytes to get a complete async command.

CID 1269793 Missing break in switch (MISSING_BREAK)

Added comment to indicate fall through was intentional.

CID 1269702: Constant variable guards dead code (DEADCODE)

Remove an unused argument to opal_show_help. This will quiet the
coverity issue.

CID 1269675 Ignoring number of bytes read (CHECKED_RETURN)

Check that at least sizeof(int) bytes are read. If this is not the
case then it is an error.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:10 -06:00
Nathan Hjelm
9353fcea95 crs/base: fix coverity issues
CID 1196720 Resource leak (RESOURCE_LEAK)
CID 1196721 Resource leak (RESOURCE_LEAK)

The code in question does leak loc_token and loc_value. Cleaned up the
code a bit and plugged the leak.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:10 -06:00
Nathan Hjelm
0e3c32a98a opal/sys_limits: fix coverity issue
CID 996175 Dereference before null check (REVERSE_NULL)

If lims is NULL then we ran out of memory. Return an error and remove
the NULL check at cleanup.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:10 -06:00
Nathan Hjelm
3edb421adc common/verbs: fix coverity issues
CID 1269864 Resource leak (RESOURCE_LEAK)
CID 1269865 Resource leak (RESOURCE_LEAK)

Slightly refactored the code to remove extra goto statements and
ensure the if_include_list and if_exclude_list are actually released
on success.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:10 -06:00
Nathan Hjelm
43d678e7ca btl/openib: fix more coverity issues
CID 1269931 Uninitialized scalar variable (UNINIT)

Initialize complete async message. This was not a bug but the fix
contributes to valgrind cleanness (uninitialed write).

CID 1269915 Unintended sign extension (SIGN_EXTENSION)

Should never happen. Quieting this by explicitly casting to uint64_t.

CID 1269824 Dereference null return value (NULL_RETURNS)

It is impossible for opal_list_remove_first to return NULL if
opal_list_is_empty returns false. I refactored the code in question to
not use opal_list_is_empty but loop until NULL is returned by
opal_list_remove_first. That will quiet the issue.

CID 1269913 Dereference before null check (REVERSE_INULL)

The storage parameter should never be NULL. The check intended to
check if *storage was NULL not storage.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:10 -06:00
Nathan Hjelm
32d4d7b6ea opal/dss: silence coverity issues
CID 1269988 Use after free (USE_AFTER_FREE)
CID 1269987 Use after free (USE_AFTER_FREE)

Both are false positives as convert is always overwritten by the call
to opal_dss_unpack_string(). Set convert to prevent this issue from
re-appearing.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:09 -06:00
Nathan Hjelm
6b86e74218 btl/openib: fix coverity issues
CID 1269933 Uninitialized scalar variable (UNINIT)

This CID isn't really an error but it is best for both valgrind and
coverity cleanness to not write uninitialized data. Added an
initializer for async_command in btl_openib_component_close.

CID 1269930 Uninitialized scalar variable (UNINIT)

Same as above. Best not to write uninitialized data. Added an
initializer for async_command.

CID 1269701 Logically dead code (DEADCODE)

Coverity is correct. The smallest_pp_qp will always be 0. Changed the
initial value so that the smallest_pp_qp is set as intended. If no
per-per queue pair exists then use the last shared queue pair. This
queue pair should have the smallest message size. This will reduce
buffer waste.

CID 1269713 Logically dead code (DEADCODE)

False positive but easy to silence. The two check are meaningless if
HAVE_XRC is 0 so protect them with #if HAVE_XRC.

CID 1269726 Division or modulo by zero (DIVIDE_BY_ZERO)

Indeed an issue. If we get an invalid value for rd_win then this will
cause a divide-by-zero exception. Added a check to ensure rd_win is >
0. Also updated the help message to reflect this requirement.

CID 1269672 Ignoring number of bytes read (CHECKED_RETURN)

This error was somewhat intentional. Linux parameter files are
probably not empty but it is safer to check the return code of read to
make sure we got something. If 0 bytes are read this code could SEGV
whe running strtoull.

CID 1269836 Unintentional integer overflow (OVERFLOW_BEFORE_WIDEN)

Add a range check to read_module_param to ensure we do not
overflow. In the future it might be worthwhile to report an error
because these parameters should never cause overflow in this
calculation.

CID 1269692 Calling risky function (DC.WEAK_CRYPTO)

??? This call was added in 2006 but I see no calls to the rest of the
rand48 family of functions. Anyway, we SHOULD NEVER be calling seed48,
srand, etc because it messes with user code. Removed the call to
seed48.

CID 1269823 Dereference null return value (NULL_RETURNS)

This is likely a false positive. The endpoint lock is being held so no
other thread should be able to remove fragments from the list. Also,
mca_btl_openib_endpoint_post_send should not be removing items from
the list. If a NULL fragment is ever returned it will likely be a
coding error on the part of an Open MPI developer. Added an assert()
to catch this and quiet the coverity error.

CID 1269671 Unchecked return value (CHECKED_RETURN)

Added a check for the return code of mca_btl_openib_endpoint_post_send
to quiet the coverity error. It is unlikely this error path will be
traversed.

CID 1270229 Missing break in switch (MISSING_BREAK)

Add a comment to indicate that the fall-through is intentional.

CID 1269735 Dereference after null check (FORWARD_NULL)

There should always be an endpoint when handling a work
completion. The endpoint is either stored on the fragment or can be
looked up using the immediate data. Move the immediate data code up
and add an assert for a NULL endpoint.

CID 1269740 Dereference after null check (FORWARD_NULL)
CID 1269741 Explicit null dereferenced (FORWARD_NULL)

Similar to CID 1269735 fix.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:09 -06:00
Nathan Hjelm
13e0a9da3a sec/base: fix coverity issues
CID 1292483 Uninitialized pointer read (UNINIT)

Initialize the method and credential members of the opal_sec_cred_t to
avoid possible invalid read when calling cleanup_cred.

CID 1292484 Double free (USE_AFTER_FREE)

Set method and credential members to NULL after freeing in
cleanup_cred.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:09 -06:00
Nathan Hjelm
f5389cbb03 opal/keyval: fix coverity issues
CID 1292738 Dereference after null check (FORWARD_NULL)

It is an error if NULL is passed for val in add_to_env_str. Removed
the NULL-check @ keyval_parse.c:253 and added a NULL check and an
error return.

CID 1292737 Logically dead code (DEADCODE)

Coverity is correct, the error code at the end of parse_line_new is
never reached. This means we fail to report parsing errors when
parsing -x and -mca lines in keyval files. I moved the error code into
the loop and removed the checks @ keyval_parse.c:314.

I also named the parse state enum type and updated parse_line_new to
use this type.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-28 08:38:09 -06:00
Gilles Gouaillardet
b896ce7c4a opal/ddt: fix opal_dt_swap_bytes
fix a bug from commit open-mpi/ompi@ef74566734
2015-05-28 16:00:03 +09:00
George Bosilca
ef74566734 Optimize the heterogeneous case when there are multiple
identical types.
2015-05-27 01:07:29 -04:00
George Bosilca
79d5e2a92b Use C99 array initialization. Add a comment about
the limitations of the functions generated with
COPY_TYPE_HETEROGENEOUS.
2015-05-27 00:44:17 -04:00
Jeff Squyres
ec57aa1805 usnic: also update btl_usnic_compat.c for versioning 2015-05-26 18:56:29 -07:00
Jeff Squyres
9c19dd4e5b usnic: make v1.10 and v2.0 fit in version checking scheme
v1.10 is now in the same compatibility level as v1.7/v1.8 (there
is/will be no v1.9 series).  v2.0 now takes over for what used to be
called v1.9.
2015-05-26 18:42:33 -07:00
Jeff Squyres
95a2b14543 usnic: avoid some compiler warnings
Followup to open-mpi/ompi@65b66ab: if we're not debugging, then #if
out an entire block so that the compiler doesn't warn about variables
that are assigned and not used.
2015-05-26 14:27:26 -07:00
Nathan Hjelm
a3eb3e2c9c Merge pull request #604 from hjelmn/opal_coverity
opal/crs: clean up parsing code to fix coverity issues
2015-05-26 15:26:01 -06:00
Jeff Squyres
68c33355c6 Merge pull request #595 from goodell/pr/usnic_getname
usnic: use fi_getname in newer libfabric
2015-05-26 17:20:13 -04:00
Nathan Hjelm
9e56ef0da9 opal/crs: clean up parsing code to fix coverity issues
CID 70622 Dereference before null check (REVERSE_INULL)
CID 70459 Logically dead code (DEADCODE)

Cleanup some cludgy code which (among other things) reimplemented
strcat, strdup, and strchr. In the process this resolved two
outstanding coverity issues.

CID 70631 Dereference before null check (REVERSE_INULL)

best_module can not be NULL in this code path. Remove NULL check and
unnecessary goto statements.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-05-26 14:45:35 -06:00
Gilles Gouaillardet
bc105afb10 opal/ddt: add copy functions for complex types
long double internal representation is arch specific,
and no conversion is done (yet), so MPI_LONG_DOUBLE should not
be used (yet) in heterogeneous mode
2015-05-26 16:59:36 +09:00
Ralph Castain
ce915b5757 Fix a typo that incorrectly set the alignment threshold in the openib BTL.
Thanks to Xavier Besseron for pointing it out
2015-05-25 07:12:57 -07:00
Gilles Gouaillardet
e47cb9636d Revert "opal_pack_homogeneous_contig_with_gaps_function: correctly handle contiguous ddt made of more than one basic type"
This reverts commit e4846746f4.
2015-05-22 17:25:33 +09:00
Gilles Gouaillardet
60e4d6c795 btl: add conversion macros for mca_btl_base_segment_t for heterogeneous support 2015-05-22 15:52:32 +09:00
Gilles Gouaillardet
e4846746f4 opal_pack_homogeneous_contig_with_gaps_function: correctly handle contiguous ddt made of more than one basic type
Fix an issue that can only be seen on an heterogeneous cluster when sending MPI_LONG_INT type and friends
2015-05-22 15:44:08 +09:00