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Jeff Squyres
0af7ac53f2 Fixes trac:1392, #1400
* add "register" function to mca_base_component_t
   * converted coll:basic and paffinity:linux and paffinity:solaris to
     use this function
   * we'll convert the rest over time (I'll file a ticket once all
     this is committed)
 * add 32 bytes of "reserved" space to the end of mca_base_component_t
   and mca_base_component_data_2_0_0_t to make future upgrades
   [slightly] easier
   * new mca_base_component_t size: 196 bytes
   * new mca_base_component_data_2_0_0_t size: 36 bytes
 * MCA base version bumped to v2.0
   * '''We now refuse to load components that are not MCA v2.0.x'''
 * all MCA frameworks versions bumped to v2.0
 * be a little more explicit about version numbers in the MCA base
   * add big comment in mca.h about versioning philosophy

This commit was SVN r19073.

The following Trac tickets were found above:
  Ticket 1392 --> https://svn.open-mpi.org/trac/ompi/ticket/1392
2008-07-28 22:40:57 +00:00
Ralph Castain
9613b3176c Effectively revert the orte_output system and return to direct use of opal_output at all levels. Retain the orte_show_help subsystem to allow aggregation of show_help messages at the HNP.
After much work by Jeff and myself, and quite a lot of discussion, it has become clear that we simply cannot resolve the infinite loops caused by RML-involved subsystems calling orte_output. The original rationale for the change to orte_output has also been reduced by shifting the output of XML-formatted vs human readable messages to an alternative approach.

I have globally replaced the orte_output/ORTE_OUTPUT calls in the code base, as well as the corresponding .h file name. I have test compiled and run this on the various environments within my reach, so hopefully this will prove minimally disruptive.

This commit was SVN r18619.
2008-06-09 14:53:58 +00:00
Ralph Castain
c992e99035 Remove the tags from orte_output_open and the filtering operation from orte_output - this will be handled differently to improve the XML output interface
This commit was SVN r18557.
2008-06-03 14:24:01 +00:00
Jeff Squyres
e7ecd56bd2 This commit represents a bunch of work on a Mercurial side branch. As
such, the commit message back to the master SVN repository is fairly
long.

= ORTE Job-Level Output Messages =

Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):

 * orte_output(): (and corresponding friends ORTE_OUTPUT,
   orte_output_verbose, etc.)  This function sends the output directly
   to the HNP for processing as part of a job-specific output
   channel.  It supports all the same outputs as opal_output()
   (syslog, file, stdout, stderr), but for stdout/stderr, the output
   is sent to the HNP for processing and output.  More on this below.
 * orte_show_help(): This function is a drop-in-replacement for
   opal_show_help(), with two differences in functionality:
   1. the rendered text help message output is sent to the HNP for
      display (rather than outputting directly into the process' stderr
      stream)
   1. the HNP detects duplicate help messages and does not display them
      (so that you don't see the same error message N times, once from
      each of your N MPI processes); instead, it counts "new" instances
      of the help message and displays a message every ~5 seconds when
      there are new ones ("I got X new copies of the help message...")

opal_show_help and opal_output still exist, but they only output in
the current process.  The intent for the new orte_* functions is that
they can apply job-level intelligence to the output.  As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.

=== New code ===

For ORTE and OMPI programmers, here's what you need to do differently
in new code:

 * Do not include opal/util/show_help.h or opal/util/output.h.
   Instead, include orte/util/output.h (this one header file has
   declarations for both the orte_output() series of functions and
   orte_show_help()).
 * Effectively s/opal_output/orte_output/gi throughout your code.
   Note that orte_output_open() takes a slightly different argument
   list (as a way to pass data to the filtering stream -- see below),
   so you if explicitly call opal_output_open(), you'll need to
   slightly adapt to the new signature of orte_output_open().
 * Literally s/opal_show_help/orte_show_help/.  The function signature
   is identical.

=== Notes ===

 * orte_output'ing to stream 0 will do similar to what
   opal_output'ing did, so leaving a hard-coded "0" as the first
   argument is safe.
 * For systems that do not use ORTE's RML or the HNP, the effect of
   orte_output_* and orte_show_help will be identical to their opal
   counterparts (the additional information passed to
   orte_output_open() will be lost!).  Indeed, the orte_* functions
   simply become trivial wrappers to their opal_* counterparts.  Note
   that we have not tested this; the code is simple but it is quite
   possible that we mucked something up.

= Filter Framework =

Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr.  The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations.  The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc.  This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).

Filtering is not active by default.  Filter components must be
specifically requested, such as:

{{{
$ mpirun --mca filter xml ...
}}}

There can only be one filter component active.

= New MCA Parameters =

The new functionality described above introduces two new MCA
parameters:

 * '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
   help messages will be aggregated, as described above.  If set to 0,
   all help messages will be displayed, even if they are duplicates
   (i.e., the original behavior).
 * '''orte_base_show_output_recursions''': An MCA parameter to help
   debug one of the known issues, described below.  It is likely that
   this MCA parameter will disappear before v1.3 final.

= Known Issues =

 * The XML filter component is not complete.  The current output from
   this component is preliminary and not real XML.  A bit more work
   needs to be done to configure.m4 search for an appropriate XML
   library/link it in/use it at run time.
 * There are possible recursion loops in the orte_output() and
   orte_show_help() functions -- e.g., if RML send calls orte_output()
   or orte_show_help().  We have some ideas how to fix these, but
   figured that it was ok to commit before feature freeze with known
   issues.  The code currently contains sub-optimal workarounds so
   that this will not be a problem, but it would be good to actually
   solve the problem rather than have hackish workarounds before v1.3 final.

This commit was SVN r18434.
2008-05-13 20:00:55 +00:00
Rolf vandeVaart
0e32dd1022 Add MPI_Alltoallv to tuned collectives and add a pairwise implementation of MPI_Alltoallv. However, do not change the default behavior for now. The only way to use new pairwise implementation is via mca parameters.
This commit was SVN r18394.
2008-05-07 02:31:24 +00:00
Brian Barrett
af4e86c25f Update collectives selection logic to allow for multiple components to be
used at nce (up to one unique collective module per collective function).
Matches r15795:15921 of the tmp/bwb-coll-select branch

This commit was SVN r15924.

The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
  r15795
  r15921
2007-08-19 03:37:49 +00:00
Jelena Pjesivac-Grbovic
3b0a52a104 adding tuned allgatherv implementation using bruck, ring, and neighbor-exchange algorithms.
The implementations passed intel and imb tests up to 40 processes.

This commit was SVN r15280.
2007-07-03 23:33:12 +00:00
Josh Hursey
dadca7da88 Merging in the jjhursey-ft-cr-stable branch (r13912 : HEAD).
This merge adds Checkpoint/Restart support to Open MPI. The initial
frameworks and components support a LAM/MPI-like implementation.

This commit follows the risk assessment presented to the Open MPI core
development group on Feb. 22, 2007.

This commit closes trac:158

More details to follow.

This commit was SVN r14051.

The following SVN revisions from the original message are invalid or
inconsistent and therefore were not cross-referenced:
  r13912

The following Trac tickets were found above:
  Ticket 158 --> https://svn.open-mpi.org/trac/ompi/ticket/158
2007-03-16 23:11:45 +00:00
Jelena Pjesivac-Grbovic
e5ed167a6e Adding tuned version of reduce_scatter implementation.
Currently 3 algorithms are available:
- non-overlapping, reduce + scatterv, (works for non-commutative operations)
- recursive halving algorithm (copied from basic module)
- ring algorithm  (similar to allreduce ring, for large messages)

This commit was SVN r13929.
2007-03-05 20:40:39 +00:00
Li-Ta Lo
196e2a86bb addes binomial tree based scatter, passed IBM and intel tests
This commit was SVN r13906.
2007-03-02 23:19:02 +00:00
Li-Ta Lo
c5d8c221b0 added binomial tree based Gather alogrithm, passed IBM and Intel tests
This commit was SVN r13835.
2007-02-28 01:11:01 +00:00
Jelena Pjesivac-Grbovic
b608887466 Adding variant of linear alltoall algorithm where the number of
outstanding requests can be limited using mca parameters.
The implementation passed Intel, IMB-3.2, and mpi_test_suite tests over
TCP and MX up to 128 processes (64 nodes), on both 32-bit and 64-bit machines.
It is not activated by default, but it should be useful for really large
communicator sizes.

This commit was SVN r13720.
2007-02-20 04:25:00 +00:00
Jelena Pjesivac-Grbovic
f1aec23507 Adding tuned allgather implementation.
It contains four algorithms: 
Bruck (ciel(logP) steps), Recursive Doubling (log(P) for power-of-2 processes), Ring (P-1 steps),
and Neighbor Exchange (P/2 steps for even number of processes).

All algorithms passed occ, IMB-2.3, and intel verification tests from ompi-tests/ for up to 56 processes.
The fixed decision function is based on results collected over MX on the Grig cluster at 
the University of Tennessee at Knoxville.  
I have also added (and commented out) copy of MPICH2 decision function for allgather
(from their IJHPCA 2005 paper).

This commit was SVN r12910.
2006-12-21 18:40:02 +00:00
George Bosilca
476b922074 Updates & upgrades:
- consistent arguments checking (not allowing to select an algorithm which
     is not available)
 - consistent way of computing the segcount (number of datatypes by segment).
 - small cleanups.
 - more informative debugging messages.

This commit was SVN r12545.
2006-11-10 19:54:09 +00:00
George Bosilca
1d80f685b5 Remove one compiler warning.
This commit was SVN r12520.
2006-11-09 20:08:43 +00:00
George Bosilca
73eec4bfef Show the MCA parameter coll_base_verbose only if Open MPI is compiled in
debug mode. Otherwise there is no debug anyway ...

This commit was SVN r12516.
2006-11-09 19:02:32 +00:00
George Bosilca
be27ee6fa0 Correct the bcast problem where we always did a bcast with segzise of 0.
Activate the reduce decision function.
Others small updates (mostly TAB to spaces).

This commit was SVN r12161.
2006-10-18 02:00:46 +00:00
Graham Fagg
c31a5ad4b3 A few small changes that just expanded in the name of neatness...
(1) As pointed out by Torsten after Jeff comment that there are 15 collectives yesterday.. nope.. I have 16 but
    miss counted them in my ifdefs (I had two #11s). Replaces with enum...
(2) Added a readonly MCA param for how many backend algorithms are available per collective (used by benchmarker/STS)
    This allowed me to remove the tuned query internal functions and replace them with ompi_coll_tuned_forced_max_algorithms[COLL].
(3) I was reading the user forced MCA params for the collectives on each comm create (module init) but I then put the 
    values into a global set of variables (like ompi_coll_tuned_reduce_forced_algorithm).

    To fix this and make the code neater:
    (a) The component looks up the MCA param indices on Open if dynamic_rules is set via the
                        ompi_coll_tuned_COLLECTIVE_intra_check_forced_init () call.
    (b) Got rid of the ompi_coll_ompi_coll_tuned_COLLECTIVE_forced_algorithm/segmentsize/etc globals with a struct that
            is now cached on the module data hung off the communicator. i.e. done right.
    (c) On module init if dynamic rules enabled we call a general getvalues routine (in coll_tuned_forced.c) to get the
            CURRENT values using the MCA param indices and then put them on the modules data segment.
        A shorter version of getvalues exists for barrier which only needs the algorithm choice

This commit was SVN r9663.
2006-04-19 23:42:06 +00:00
Brian Barrett
566a050c23 Next step in the project split, mainly source code re-arranging
- move files out of toplevel include/ and etc/, moving it into the
    sub-projects
  - rather than including config headers with <project>/include, 
    have them as <project>
  - require all headers to be included with a project prefix, with
    the exception of the config headers ({opal,orte,ompi}_config.h
    mpi.h, and mpif.h)

This commit was SVN r8985.
2006-02-12 01:33:29 +00:00
Graham Fagg
232bb9534a Start moving stuff out of modules that should be in the component.
This commit was SVN r8874.
2006-02-01 20:50:14 +00:00
Jeff Squyres
54c4bd3ce2 Update to have public symbols be consistent; use new prefix rule
(apparently we've been doing this in opal and orte, but not in ompi
yet).  All public symbols begin with "ompi_coll_tuned_" (not
mca_coll_tuned_) except the component struct.  Now this component
passes the illegal symbol report with no hits.

This commit was SVN r8589.
2005-12-22 13:49:33 +00:00
Graham Fagg
877f7bbe6a File based dynamic up and tested...
Lots of misc fixes: printfs->opal_output, handles fanin/out correctly for forced ops
unused vars, correct calculations on meaning of 'msgsize' for decision functions
(varies depending on algorithm), etc

This commit was SVN r8113.
2005-11-11 04:49:29 +00:00
George Bosilca
3507d5e9cd opal/util/output.h is required for optimized builds.
This commit was SVN r8076.
2005-11-10 01:19:27 +00:00
Jeff Squyres
42ec26e640 Update the copyright notices for IU and UTK.
This commit was SVN r7999.
2005-11-05 19:57:48 +00:00
Graham Fagg
9547a635a9 snapshot while switching systems
but, dynamic rules from a user defined config file is almost there now

This commit was SVN r7943.
2005-11-01 00:19:05 +00:00
Graham Fagg
c3e1dc410d Started to add basic linear functions
Also started to add the allreduce algorithms as I test them
(i.e. if it goes in its after testing from now on)

This commit was SVN r7886.
2005-10-26 23:11:32 +00:00
Graham Fagg
382f05c7ad Infastructure changes.
started to add static (fixed if) statement based decision rules based on gigE numbers
added mca params so that a user can force a certain algorithm/segment/topo on a per collective basis
(this is not in the fixed call path but only in the dynamic (at com create) call path).
(these params can be used by test suites such as OCC to choice which algorithm they are using).

This commit was SVN r7854.
2005-10-25 03:55:58 +00:00
Graham Fagg
d8e32464cb ops. setting/reading mca option from the right varible would help.
This commit was SVN r7850.
2005-10-24 21:33:48 +00:00
Graham Fagg
607bdf51b6 Last Cleanup BEFORE adding last two methods and final cross over points.
- new mca param calls
- move printfs to OPAL_OUTPUT

This commit was SVN r7692.
2005-10-11 18:51:03 +00:00
Graham Fagg
f354140587 Multiple changes
-added some alltoall calls (pairwise checked ok, bruck testing)
-changes in use of data hung of communicator
-making sendrecv call a true inline function
-more use ompi_ddt routines

This commit was SVN r7337.
2005-09-13 04:28:18 +00:00
Graham Fagg
36eddb6609 checkpoint
This commit was SVN r7168.
2005-09-03 01:41:13 +00:00
Graham Fagg
4ac2445c61 Various clean ups
Changed component so choice of decision functions controlled by mca params
(for now fixed decision functions (if statements) default)
started fixes for the various bcasts

This commit was SVN r7117.
2005-08-31 23:38:09 +00:00
Graham Fagg
1caec16018 snapshot as I move machines
do not use

This commit was SVN r7103.
2005-08-31 01:43:48 +00:00