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Граф коммитов

1122 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
ede9fc17b0 gen-mpi-sizeof.pl: don't generate sub for headers
We only need the dummy subroutine when we're generating the body of a
file -- not when we're generating headers.
2015-08-20 14:24:45 -07:00
Jeff Squyres
edf485716e gen-mpi-sizeof.pl: restore execute permission
Somehow the "x" bit got reset in the last commit.
2015-08-20 13:31:02 -07:00
--quiet
d5763a8288 fortran sizeof: ensure mpi_sizeof*f90 is not empty
Per http://www.open-mpi.org/community/lists/devel/2015/08/17775.php,
some compilers don't like it when there's a .f90 file that only
contains comments (and no actual Fortran code).  So if OMPI determines
that the Fortran compiler does not support enough Fortran mojo to
support MPI_SIZEOF, generate at least one dummy Fortran subroutine
that can be compiled in an otherwise barren Fortran landscape that is
devoid of life and hope.
2015-08-20 13:01:14 -07:00
Gilles Gouaillardet
99730f798b fortran: (try to) align C objects used by Fortran
Fortran uses objects (ompi_f08_mpi_comm_world, mpi_fortran_bottom,, ...) that are defined in C.
Some compilers have different requirements on how these objects should be aligned.
Smaller alignment in C can lead to several confusing warnings from the linker, so try to
find the alignment expected by Fortran compiler, and inform the C compiler.
2015-08-18 14:01:20 +09:00
Jeff Squyres
e57861b0a5 fortran: only have one _LIBADD
Accidentally added a 2nd _LIBADD in a prior commit.  This commit
merges them back into a single _LIBADD.
2015-08-17 06:52:54 -07:00
Nathan Hjelm
dbfd6e6e5e Merge pull request #807 from hjelmn/win_update
Window updates
2015-08-15 12:33:40 -06:00
Jeff Squyres
a7f897ae49 fortran: link the opal-pal.la library directly
The libmpi_*.la fortran libraries make some direct calls to
libopen-pal.la.  In many (most?) cases, having libmpi_* link
against libmpi is sufficient (because libmpi pulls in libopen-pal).
But when building RPMs on SLES, some compiler/linker flags are used
that seem to make this implicit linking not sufficient -- we get
missing opal symbols when creating libmpi_mpifh.la.  So link in
open-pal directly (vs. indirectly), which solves the problem.
2015-08-15 06:46:01 -07:00
Nathan Hjelm
b8356dae05 ompi/win: add internal support for returning same_size and same_disp_unit info keys
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2015-08-13 13:19:52 -06:00
Jeff Squyres
2409fa166b get_library_version: checking string constants vs. NULL is dead code
The prior code was checking string constants (which are #defines from
configure) against NULL.  They can never be NULL, so the checks were
overly-defensive.  If the preprocessor macros do not exist, we'll get
a different compiler error.  So remove the dead code.

This fixes CID 72349.
2015-08-12 05:35:12 -07:00
Nathaniel Graham
8f4c16da27 Java null handle bugfix
A helper method in Request.java could cause a crash
if the request array that was passed contained nulls.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-08-10 15:54:36 -06:00
Nathaniel Graham
8fcc317a57 Add explicit implementation of Cloneable
Added Cloneable to the implemented interface list as per
Coverity suggestion.  The required methods were already
implemented, but it was not explicitly stated.  This is
an intent revealing change.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-08-07 12:16:06 -06:00
Howard Pritchard
36d7855280 Merge pull request #763 from nrgraham23/status_x_java_bindings
Status x java bindings
2015-08-03 09:26:16 -06:00
Gilles Gouaillardet
2fa8f4d53a Revert "fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used"
Optimization was incorrect, so revert this commit.

This reverts commit 83375bcc5c.
2015-08-03 08:45:12 +09:00
Nathaniel Graham
57b95fff2e Commenting fixes for Datatype.java
Some of the @code tags were incorrect.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-30 15:17:55 -06:00
Nathaniel Graham
17c606b35c White Space Fixes
Github revealed some wierd spacing issues.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-30 15:07:19 -06:00
Nathaniel Graham
2fecb06059 Status X Functons
Includes java bindings for MPI_GET_ELEMENTS_X and
MPI_STATUS_SET_ELEMENTS_X.  This PR also adds the
Count object which represents MPI_Count.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-30 15:00:13 -06:00
Howard Pritchard
ac4197fb1b Merge pull request #760 from nrgraham23/request_get_status_java
Java binding for MPI_REQUEST_GET_STATUS
2015-07-30 13:57:06 -06:00
Nysal Jan K.A
5a7bd898f9 Fix an invalid memory access in mrecv & imrecv
After the call to PML mrecv/imrecv, the message handle
is set to MPI_MESSAGE_NULL. Use the cached communicator
while invoking the error handler.
2015-07-30 19:52:40 +05:30
Howard Pritchard
ea6f5b31fd Merge pull request #749 from nrgraham23/additional_comm_java_bindings
Additional java bindings for the Comm class
2015-07-29 16:17:54 -06:00
Nathaniel Graham
9b5786d954 Java binding for MPI_REQUEST_GET_STATUS
This adds the java binding for MPI_REQUEST_GET_STATUS.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-29 12:04:46 -06:00
Howard Pritchard
569764cd98 Merge pull request #759 from nrgraham23/status_java_bindings
Java bindings for Status methods
2015-07-29 10:36:56 -06:00
Nathaniel Graham
efe69c89a7 Java bindings for Status methods
Includes java bindings for the MPI_STATUS_SET_ELEMENTS and
MPI_STATUS_SET_CANCELLED.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-29 09:47:03 -06:00
Gilles Gouaillardet
83375bcc5c fortran: optimize testall and waitall when MPI_STATUSES_IGNORE is used 2015-07-29 10:00:27 +09:00
Edgar Gabriel
f09b834cab remove the C++ interfaces for the new non-blocking collective I/O functions. They are not defined in MPI 3.1 2015-07-28 09:28:37 -05:00
Gilles Gouaillardet
9c77c6b66d fortran: fix f08 bindings
only define the unique fortran symbol depending on
 - CAPS
 - PLAIN
 - SINGLE_UNDERSCORE
 - DOUBLE_UNDERSCORE
and bind the f08 symbol to the uniquely defined C symbol.

Use real data structures to make the code simpler.
(perl script written by Jeff)
2015-07-27 16:28:57 +09:00
Gilles Gouaillardet
7af5238595 f08: misc Makefile fixes 2015-07-27 16:19:44 +09:00
Jeff Squyres
5e159feb5a get_library_version: always use "X.Y.Z" version number format
Fix one last place where we would write only "X.Y" if Z was 0 (we now
always write all three X, Y, Z values, even if Z is zero).
2015-07-25 08:01:36 -04:00
Nathaniel Graham
59c43f4669 Additional java bindings for the Comm class
Added bindings for MPI_COMM_CREATE_GROUP and MPI_COMM_DUP_WITH_INFO.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-24 16:14:35 -06:00
Nathaniel Graham
f87c41e926 Fix a compile issue in MPI.java
A conflict was not fully resolved in the previous merge.  This
fixes the issue that was created.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-24 11:54:52 -06:00
Nathaniel Graham
0d7a38552e Formatting fixes for Java files.
Fixed tab indenting as well as some of the block comments
at the top of a few of the files.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-24 11:02:13 -06:00
Howard Pritchard
5f14273e32 Merge pull request #743 from nrgraham23/java_win_name_bindings
Java bindings for window name get and set
2015-07-24 10:53:14 -06:00
Nathaniel Graham
2a156a1c2e Java bindings for window name get and set
Includes bindings for MPI_WIN_GET_NAME and MPI_WIN_SET_NAME.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-23 18:01:19 -06:00
Nathaniel Graham
a1b47a333a Java Environment Variable Bindings
Added the bindings for MPI_GET_VERSION and MPI_GET_LIBRARY_VERSION.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-23 14:52:01 -06:00
Howard Pritchard
967907fea4 Merge pull request #731 from nrgraham23/alltoallw_functions
Alltoallw functions
2015-07-22 12:21:01 -06:00
Nathaniel Graham
1197d2a893 Adding missed copyrights.
I did not add the LANL copyrights to the files I touched
while fixing the javadoc errors.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-22 11:04:41 -06:00
Nathaniel Graham
11e1f09c25 White space fixes
Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-21 16:39:59 -06:00
Nathaniel Graham
7548e342dd Java bindings for alltoallw functions.
Includes bindings for MPI_ALLTOALLW and MPI_IALLTOALLW.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-21 16:29:22 -06:00
Gilles Gouaillardet
46a87cabf0 fix comment in ompi/mpi/c/group_{excl,incl}.c
no code change
2015-07-21 10:29:55 +09:00
Gilles Gouaillardet
bd60ce1655 fortran: add missing non blocking i/o files to Makefile
fixes open-mpi/ompi@01f752a504
2015-07-16 11:27:14 +09:00
Howard Pritchard
466c8b0159 Merge pull request #697 from edgargabriel/pr/nb-coll-part2
pr/nb collective I/O part2
2015-07-14 14:00:39 -06:00
Jeff Squyres
efc4c93d7a MPI_Scatter.3in: fix typo
Thanks to Akshay Venkatesh for noticing the mistake.
2015-07-10 20:11:39 -07:00
Nathaniel Graham
6bca7486c5 Added suppression statements.
There are a few places where adding the @param for the variable
javadoc wants does not make sense, so I added suppression statements
in those areas.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-10 16:04:22 -06:00
Nathaniel Graham
580251e96a Fixes for javadoc warnings.
Added missings @params and @throws as well as adding definitions for the @throws tags.

Signed-off-by: Nathaniel Graham <ngraham@lanl.gov>
2015-07-10 12:59:45 -06:00
Nathaniel Graham
7f6d141bd6 More one sided java bindings.
Bindings for the MPI_WIN_FLUSH_LOCAL, MPI_WIN_FLUSH_LOCAL_ALL, MPI_WIN_ALLOCATE, MPI_WIN_ALLOCATE_SHARED, and MPI_COMM_SPLIT_TYPE.  Also added several necessary constants.

Signed-off-by: Nathaniel Graham ngraham@lanl.gov
2015-07-10 11:40:18 -06:00
Howard Pritchard
e9d6c7a910 Merge pull request #693 from nrgraham23/additional_java_bindings
Additional java bindings
2015-07-10 11:10:29 -06:00
Edgar Gabriel
95c144c4b6 make the f08 interface actually compile. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
601e5efca8 add the manpages for the new MPI-3.1 non-blocking collective I/O operations. 2015-07-09 10:58:14 -05:00
Edgar Gabriel
19994ff60d add fortran interfaces to the new nb collective I/O functions 2015-07-09 10:58:14 -05:00
Edgar Gabriel
01f752a504 make the c interface functions compile and work and start with the fortran interface functions. 2015-07-09 10:58:13 -05:00
Edgar Gabriel
f2af8e94ff - first cut on the io interface changes
- add the C interfaces for the new non-blocking collective I/O functions of MPI 3.1
2015-07-09 10:58:13 -05:00