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Автор SHA1 Сообщение Дата
Aurelien Bouteiller
ebe6df4c06 Moving the pml_v_output global variable inside the pml_v structure. This should avoid one of the missing symbols when visibility is enabled.
This commit was SVN r18627.
2008-06-09 20:38:44 +00:00
Galen Shipman
dbd282fcad doh.. fix GET protocol..
This commit was SVN r18623.
2008-06-09 19:45:44 +00:00
Ralph Castain
9613b3176c Effectively revert the orte_output system and return to direct use of opal_output at all levels. Retain the orte_show_help subsystem to allow aggregation of show_help messages at the HNP.
After much work by Jeff and myself, and quite a lot of discussion, it has become clear that we simply cannot resolve the infinite loops caused by RML-involved subsystems calling orte_output. The original rationale for the change to orte_output has also been reduced by shifting the output of XML-formatted vs human readable messages to an alternative approach.

I have globally replaced the orte_output/ORTE_OUTPUT calls in the code base, as well as the corresponding .h file name. I have test compiled and run this on the various environments within my reach, so hopefully this will prove minimally disruptive.

This commit was SVN r18619.
2008-06-09 14:53:58 +00:00
George Bosilca
2aec094d56 The PML V is a component so it should use OMPI_MODULE_DECLSPEC.
This commit was SVN r18610.
2008-06-06 17:43:57 +00:00
George Bosilca
4d8cbbc167 Add Pasha's patch as it correctly solve the issues. In fact in the current
incarnation these functions do not need the inline keyword anymore.

This commit was SVN r18558.
2008-06-03 16:03:36 +00:00
Ralph Castain
c992e99035 Remove the tags from orte_output_open and the filtering operation from orte_output - this will be handled differently to improve the XML output interface
This commit was SVN r18557.
2008-06-03 14:24:01 +00:00
George Bosilca
e361bcb64c Send optimizations.
1. The send path get shorter. The BTL is allowed to return > 0 to specify that the
   descriptor was pushed to the networks, and that the memory attached to it is 
   available again for the upper layer. The MCA_BTL_DES_SEND_ALWAYS_CALLBACK flag
   can be used by the PML to force the BTL to always trigger the callback.
   Unmodified BTL will continue to work as expected, as they will return OMPI_SUCCESS
   which force the PML to have exactly the same behavior as before. Some BTLs have
   been modified: self, sm, tcp, mx.
2. Add send immediate interface to BTL.
   The idea is to have a mechanism of allowing the BTL to take advantage of
   send optimizations such as the ability to deliver data "inline". Some
   network APIs such as Portals allow data to be sent using a "thin" event
   without packing data into a memory descriptor. This interface change
   allows the BTL to use such capabilities and allows for other optimizations
   in the future. All existing BTLs except for Portals and sm have this interface
   set to NULL.

This commit was SVN r18551.
2008-05-30 03:58:39 +00:00
Galen Shipman
4da4c44210 Receive side changes, basically uses multiple active message callbacks rather
than using a single receive callback followed by a switch on the header.
Also fast pathed the matching for small fragments. 

This commit was SVN r18549.
2008-05-30 01:29:09 +00:00
Jeff Squyres
e7ecd56bd2 This commit represents a bunch of work on a Mercurial side branch. As
such, the commit message back to the master SVN repository is fairly
long.

= ORTE Job-Level Output Messages =

Add two new interfaces that should be used for all new code throughout
the ORTE and OMPI layers (we already make the search-and-replace on
the existing ORTE / OMPI layers):

 * orte_output(): (and corresponding friends ORTE_OUTPUT,
   orte_output_verbose, etc.)  This function sends the output directly
   to the HNP for processing as part of a job-specific output
   channel.  It supports all the same outputs as opal_output()
   (syslog, file, stdout, stderr), but for stdout/stderr, the output
   is sent to the HNP for processing and output.  More on this below.
 * orte_show_help(): This function is a drop-in-replacement for
   opal_show_help(), with two differences in functionality:
   1. the rendered text help message output is sent to the HNP for
      display (rather than outputting directly into the process' stderr
      stream)
   1. the HNP detects duplicate help messages and does not display them
      (so that you don't see the same error message N times, once from
      each of your N MPI processes); instead, it counts "new" instances
      of the help message and displays a message every ~5 seconds when
      there are new ones ("I got X new copies of the help message...")

opal_show_help and opal_output still exist, but they only output in
the current process.  The intent for the new orte_* functions is that
they can apply job-level intelligence to the output.  As such, we
recommend that all new ORTE and OMPI code use the new orte_*
functions, not thei opal_* functions.

=== New code ===

For ORTE and OMPI programmers, here's what you need to do differently
in new code:

 * Do not include opal/util/show_help.h or opal/util/output.h.
   Instead, include orte/util/output.h (this one header file has
   declarations for both the orte_output() series of functions and
   orte_show_help()).
 * Effectively s/opal_output/orte_output/gi throughout your code.
   Note that orte_output_open() takes a slightly different argument
   list (as a way to pass data to the filtering stream -- see below),
   so you if explicitly call opal_output_open(), you'll need to
   slightly adapt to the new signature of orte_output_open().
 * Literally s/opal_show_help/orte_show_help/.  The function signature
   is identical.

=== Notes ===

 * orte_output'ing to stream 0 will do similar to what
   opal_output'ing did, so leaving a hard-coded "0" as the first
   argument is safe.
 * For systems that do not use ORTE's RML or the HNP, the effect of
   orte_output_* and orte_show_help will be identical to their opal
   counterparts (the additional information passed to
   orte_output_open() will be lost!).  Indeed, the orte_* functions
   simply become trivial wrappers to their opal_* counterparts.  Note
   that we have not tested this; the code is simple but it is quite
   possible that we mucked something up.

= Filter Framework =

Messages sent view the new orte_* functions described above and
messages output via the IOF on the HNP will now optionally be passed
through a new "filter" framework before being output to
stdout/stderr.  The "filter" OPAL MCA framework is intended to allow
preprocessing to messages before they are sent to their final
destinations.  The first component that was written in the filter
framework was to create an XML stream, segregating all the messages
into different XML tags, etc.  This will allow 3rd party tools to read
the stdout/stderr from the HNP and be able to know exactly what each
text message is (e.g., a help message, another OMPI infrastructure
message, stdout from the user process, stderr from the user process,
etc.).

Filtering is not active by default.  Filter components must be
specifically requested, such as:

{{{
$ mpirun --mca filter xml ...
}}}

There can only be one filter component active.

= New MCA Parameters =

The new functionality described above introduces two new MCA
parameters:

 * '''orte_base_help_aggregate''': Defaults to 1 (true), meaning that
   help messages will be aggregated, as described above.  If set to 0,
   all help messages will be displayed, even if they are duplicates
   (i.e., the original behavior).
 * '''orte_base_show_output_recursions''': An MCA parameter to help
   debug one of the known issues, described below.  It is likely that
   this MCA parameter will disappear before v1.3 final.

= Known Issues =

 * The XML filter component is not complete.  The current output from
   this component is preliminary and not real XML.  A bit more work
   needs to be done to configure.m4 search for an appropriate XML
   library/link it in/use it at run time.
 * There are possible recursion loops in the orte_output() and
   orte_show_help() functions -- e.g., if RML send calls orte_output()
   or orte_show_help().  We have some ideas how to fix these, but
   figured that it was ok to commit before feature freeze with known
   issues.  The code currently contains sub-optimal workarounds so
   that this will not be a problem, but it would be good to actually
   solve the problem rather than have hackish workarounds before v1.3 final.

This commit was SVN r18434.
2008-05-13 20:00:55 +00:00
Gleb Natapov
31d2797a2f If RDMA PUT is received before ACK and registration of memory fails don't
start sending fragment by copy in/out before ACK is received as we don't
know pointer to receive request yet.

Pipeline protocol sometimes doesn't send ACK though, so this case is still
broken.

This commit was SVN r18423.
2008-05-11 12:40:55 +00:00
Josh Hursey
da2f1c58e2 Some checkpoint/restart cleanup.
* Remove the opal_only option. This was suffering from bit rot, and no one uses it. It can be added back fairly easily if wanted.
 * Cleanup metadata interactions at the local level.
 * Touch up some of the INC funcitonality (fix typos and a minor ordering issue)

This commit was SVN r18416.
2008-05-08 18:47:47 +00:00
Shiqing Fan
8393fb5d47 Use the new memchecker_call function for memory checking of non-blocking communication.
This commit was SVN r18399.
2008-05-07 12:28:51 +00:00
Shiqing Fan
f35a06119c Use memchecker_convertor_call function instead the old one. Move the function to the place that we can use convertor.
This commit was SVN r18370.
2008-05-05 13:57:27 +00:00
Josh Hursey
dcd21d7d07 Some checkpoint/restart fixes in response to r18338 (changes in modex).
Things should be working now.

This commit was SVN r18348.

The following SVN revision numbers were found above:
  r18338 --> open-mpi/ompi@3e55fe6f6d
2008-05-01 17:48:13 +00:00
Ralph Castain
3e55fe6f6d Fold in the revised modex scheme. Move the ompi_proc_t modex portions to the RTE level since the daemons already have that info. Provide each process with the equivalent of a "nidmap" - both a map of what nodes are in the job, and a map of which node each process is on. This enables the use of static ports, though that hasn't been turned "on" in this commit.
Update the rsh tree spawn capability so we spawn the next wave of daemons before launching our own local procs.

Add an ability to encode nodenames for large clusters with contiguous node name numbering schemes - this allows communication of all node names in a few bytes instead of tens-of-bytes/node.

This commit was SVN r18338.
2008-04-30 19:49:53 +00:00
George Bosilca
6e6c370917 Rollback r18274 as its legal to have a sequence number smaller than the
expected one. It doesn't necessarily means the message is duplicated,
it can simply signify the message is out of sequence and the counter
overflowed.

This commit was SVN r18323.

The following SVN revision numbers were found above:
  r18274 --> open-mpi/ompi@73c9de3af9
2008-04-27 18:35:54 +00:00
Aurelien Bouteiller
c20b020ea6 Fix ticket #1275. The pml v can now be correctly deactivated on the configure command line. Also fix a dist target under some unusual circumpstances.
This commit was SVN r18291.
2008-04-24 21:42:54 +00:00
Josh Hursey
2c736873bb Fix a checkpoint/restart bug that causes a restarted application to occasionally throw a SIGSEGV or SIGPIPE due to invalid socket descriptors.
The problem was caused by a bad ordering between the restart of the ORTE level tcp connections (in the OOB - out-of-band communication) and the Open MPI level tcp connections (BTLs). Before this commit ORTE would shutdown and restart the OOB completely before the OMPI level restarted its tcp connections. What would happen is that a socket descriptor used by the OMPI level on checkpoint was assigned to the ORTE level on restart. But the OMPI level had no knowledge that the socket descriptor it was previously using has been recycled so it closed it on restart. This caused the ORTE level to break as the newly created socket descriptor was closed without its knowledge.

The fix is to have the OMPI level shutdown tcp connections, allow the ORTE level to restart, and then allow the OMPi level to restart its connections. This seems obvious, and I'm surprised that this bug has not cropped up sooner. I'm confident that this specific problem has been fixed with this commit.

Thanks to Eric Roman and Tamer El Sayed for their help in identifying this problem, and patience while I was fixing it.

 * Add a new state {{{OPAL_CRS_RESTART_PRE}}}. This state identifies when we are on the down slope of the INC (finalize-like) which is useful when you want to close, but not reopen a component set for fear of interfering with a lower level.
 * Use this new state in OMPI level coordination. Here we want to make sure to play well with both the OMPI/BTL/TCP and ORTE/OOB/TCP components.
 * Update ft_event functions in PML and BML to handle the new restart state.
 * Add an additional flag to the error output in OOB/TCP so we can see what the socket descriptor was on failure as this can be helpful in debugging.

This commit was SVN r18276.
2008-04-24 17:54:22 +00:00
George Bosilca
3ccac4f803 Oops ...
This commit was SVN r18275.
2008-04-24 15:54:52 +00:00
George Bosilca
73c9de3af9 Bark if we got a wrong sequence number. Here wrong means that the
seq number if smaller than what we expect.

This commit was SVN r18274.
2008-04-24 15:48:43 +00:00
Josh Hursey
cc83d41ad9 Merge in tmp/jjh-scratch
{{{
 svn merge -r 18218:18240 https://svn.open-mpi.org/svn/ompi/tmp/jjh-scratch .
}}}

Contains:
 * Primarily a fix for a user reported problem where a cached file descriptor is causing a SIGPIPE on restart.
 * Cleanup some small memory leaks from using mca_base_param_env_var() - Thanks Jeff
 * Cleanup ORTE FT tool compilation in non-FT builds - Thanks Tim P.
 * Cleanup mpi interface with missplaced {{{OPAL_CR_ENTER_LIBRARY}}} - Thanks Terry
 * Some other sundry cleanup items all dealing with C/R functionality in the trunk.

This commit was SVN r18241.
2008-04-23 00:17:12 +00:00
Ralph Castain
fa082cafa9 Shift the architecture calculation from the ompi/datatype engine to the opal/util area. This allows us to compute the architecture earlier in the launch and communicate it outside of the modex.
Note: this is an early preliminary step in the movement of portions of the datatype engine to the opal layer.

This commit was SVN r18198.
2008-04-17 20:43:56 +00:00
Tim Prins
3582e11200 cleanup some warnings on 32 bit systems
This commit was SVN r18187.
2008-04-17 12:25:05 +00:00
Ralph Castain
3a0d09300b Fully implement the inbound binomial allgather for daemon-based collectives. Supports both modex and barrier operations.
Comm_spawn still uses the rank=0 method - shifting that algo to the daemons is under study.

This commit was SVN r18115.
2008-04-09 22:10:53 +00:00
Shiqing Fan
28746bbcdb Remove the memchecker macro in pml base request, used in req_wait.c, which actually is in the wrong place. Instead, one simple call from send_request_free and recv_request_free(already done) will do all the work, fast and clean.
This commit was SVN r18095.
2008-04-07 17:46:50 +00:00
Shiqing Fan
a1e5df1cc9 Use the new memchecker function call which is based on convertor.
Remove one unnecessary call.

This commit was SVN r18085.
2008-04-07 07:52:04 +00:00
George Bosilca
b4f828f389 We need a newline at the nd of the file, or some compiler bark.
This commit was SVN r18023.
2008-03-30 19:05:56 +00:00
Aurelien Bouteiller
77653ac787 Missing .h file in makefile breaked nightly tarball distcheck...
This commit was SVN r18006.
2008-03-28 14:36:56 +00:00
Aurelien Bouteiller
c16339944a Fix a coverity warning about using unsafe sprintf.
This commit was SVN r17999.
2008-03-27 21:24:27 +00:00
Aurelien Bouteiller
e11237aadb Introduction of the "progress" sender_based method to replace the slow isend-self method.
This commit was SVN r17998.
2008-03-27 21:19:45 +00:00
Aurelien Bouteiller
93db01871e This is part of the previous patch.
This commit was SVN r17997.
2008-03-27 21:06:14 +00:00
Aurelien Bouteiller
f8bf6f2c6a Code cleanup.
sender_based.h is now split in two files, to solve cyclic .h files inclusion. 
Most macros are now inline functions.
Variable names have been changed from places to places.
Various other small things... 

This commit was SVN r17996.
2008-03-27 21:05:44 +00:00
Gleb Natapov
cf40674369 Decide if sends should be throttled at the receiver and pass this to the sender
in an ACK message. The decision can't be done reliably at the sender.

This commit was SVN r17987.
2008-03-27 08:56:43 +00:00
Galen Shipman
0116041133 BTL shouldn't own the passive side's descriptor in the PML get protocol. The BTL
doesn't know when to free it on the passive side. 

This commit was SVN r17943.
2008-03-25 01:43:41 +00:00
George Bosilca
8943ae0b4e Cleanup plus some typos.
This commit was SVN r17858.
2008-03-18 03:03:33 +00:00
Josh Hursey
612ebdc2ac Cleanup some symbol visability issues.
This commit was SVN r17733.
2008-03-05 13:59:25 +00:00
Ralph Castain
d70e2e8c2b Merge the ORTE devel branch into the main trunk. Details of what this means will be circulated separately.
Remains to be tested to ensure everything came over cleanly, so please continue to withhold commits a little longer

This commit was SVN r17632.
2008-02-28 01:57:57 +00:00
Aurelien Bouteiller
76e6334a57 This change is a mistake. CONVERTOR METHOD does not work with unpatched trunk. Revert back to PACK_METHOD.
This commit was SVN r17629.
2008-02-27 20:02:25 +00:00
Aurelien Bouteiller
1d57b8b0e0 Replaced all the (long) cast by PRIsize_t. Should solve definitely compiler warnings that appeared from time to time depending on sizeof(size_t)...
This commit was SVN r17627.
2008-02-27 19:58:18 +00:00
George Bosilca
fa31ec81d0 Add the ownership flags to the PML/BTL interface. The layer
owning the descriptor is responsible for releasing it once
the descriptor is not in use anymore.

This commit was SVN r17497.
2008-02-18 17:39:30 +00:00
Shiqing Fan
653857ddbe Wrong function name was copied here.
This commit was SVN r17486.
2008-02-17 19:47:47 +00:00
Gleb Natapov
354c5bc5e1 Don't call progress() from OB1 fragment scheduling functions. They don't serve
any purpose and case recursion calls to progress engine.

This commit was SVN r17478.
2008-02-17 12:42:32 +00:00
Aurelien Bouteiller
3ffe845187 Fixed warning.
This commit was SVN r17454.
2008-02-14 15:18:19 +00:00
Gleb Natapov
0a1fa2cb56 req_match_received is set inside MCA_PML_OB1_RECV_REQUEST_MATCHE().
This commit was SVN r17442.
2008-02-13 08:34:39 +00:00
Gleb Natapov
876f49f1a7 Remove unnecessary assignment. It is done later in the same function.
This commit was SVN r17441.
2008-02-13 08:28:25 +00:00
Shiqing Fan
54c7b71cfd Use the correct way of including memchecker.h, which will work with '--with-devel-headers'.
This commit was SVN r17435.
2008-02-12 18:01:17 +00:00
Rainer Keller
7621800477 - Fix and add comments -- output full name for pd
- Protect argument in macro...

This commit was SVN r17434.
2008-02-12 16:59:59 +00:00
Jeff Squyres
6adc5015f9 This file was accidentally re-introduced in r17409.
This commit was SVN r17428.

The following SVN revision numbers were found above:
  r17409 --> open-mpi/ompi@98f70d6318
2008-02-12 13:07:44 +00:00
Shiqing Fan
f5792bbda5 merging the memchecker into trunk.
This commit was SVN r17424.
2008-02-12 08:46:27 +00:00
George Bosilca
55179b833c Unexpected ... Removing unistd.h from datatype.h break the compilation
of the pml_base_bsend ... 

This commit was SVN r17412.
2008-02-10 21:49:19 +00:00