ports/openmpi
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Автор SHA1 Сообщение Дата
Thananon Patinyasakdikul
ea2d38de14 romio: update REFRESH_NOTES to accommodate the random() patch. 
From patch: open-mpi/ompi@23b27c510c
Signed-off-by: Thananon Patinyasakdikul <tpatinya@utk.edu>
 2016-10-31 16:08:08 -04:00
Edgar Gabriel
fb9fa4fbc4 Merge pull request #1938 from edgargabriel/pr/barrier-on-close 
io/ompio: Add barrier to file_close and to file_set_size
 2016-08-08 09:22:08 -05:00
Edgar Gabriel
4709f4229b Merge pull request #1929 from edgargabriel/pr/ompio-code-reorg 
io/ompio: next step in code-reorganization
 2016-08-08 09:20:54 -05:00
Thananon Patinyasakdikul
23b27c510c romio: make romio use internal opal_random instead of rand(3). 
This fixes issue #1877
 2016-08-05 09:04:52 -07:00
Edgar Gabriel
9c3180160c io/ompio: Add barrier to file_close and to file_set_size 
This fixes a bug reported on the mailing for ompio.
https://www.open-mpi.org/community/lists/users/2016/05/29333.php
 2016-08-04 11:20:31 -05:00
Edgar Gabriel
19fe5cac50 io/ompio: next step in code-reorganization 
- move the sort_iovec operations to fcoll/base
 - move set_view_internal to common/ompio
 - move set_file_default to common/ompio
 - remove io_ompio_sort, not used anymore.
 2016-08-02 09:18:29 -05:00
Edgar Gabriel
c0bd8728fd io/ompio: move aggregator selection code to a separate file 
- move all functions related to aggregator selection to a single file
- perform code cleanup fixing many Coverty complains along the way.
 2016-08-01 14:04:27 -05:00
Edgar Gabriel
160d9a78c1 Merge pull request #1886 from edgargabriel/pr/ompio-reorg 
io/ompio: move io/ompio functionality to common/ompio
 2016-07-29 12:24:21 -05:00
Edgar Gabriel
b0fa1fd2a1 move the internal file_open/close functions to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
ccf76b7791 moving the internal read/write functions to common/ompio 
and update all fs/fcoll/sharedfp components to use these functions.
 2016-07-21 13:08:32 -05:00
Edgar Gabriel
688710d408 make common/ompio compile 2016-07-21 13:08:32 -05:00
Edgar Gabriel
39ae93b87b modify the fcoll components to use the common/ompio print queues 2016-07-21 13:08:32 -05:00
Edgar Gabriel
fe17410943 next step in making the print_queue functionality move to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
af67c8f239 first cut on moving some ompio functionality to common/ompio 2016-07-21 13:08:32 -05:00
Edgar Gabriel
a899c0fb38 fcoll/static: fix coverty warnings 
fix coverty warnings CID 72144, CID 710677, CID 1364164
 2016-07-21 13:08:15 -05:00
Edgar Gabriel
195ec89732 fcoll/base: mv coll_array functionis to fcoll base 
the coll_array functions are truly only used by the fcoll modules, so move
them to fcoll/base. There is currently one exception to that rule (number of aggreagtors
logic), but that function will be moved in a long term also to fcoll/base.
 2016-07-14 08:41:14 -05:00
Edgar Gabriel
1f1504ebbb remove some unused code 2016-07-14 08:41:14 -05:00
Edgar Gabriel
3dd81e9e09 io/ompio: fix the request in case of a zero size write/read operation 2016-07-08 14:11:22 -05:00
Edgar Gabriel
1ddfd6cdca io/ompio: fix the preallocate function 
handle preallocating sizes less than the current file size correctly.
 2016-06-14 10:50:32 -05:00
Edgar Gabriel
d6af5444a6 fix the get_byte_offset code 2016-06-03 11:36:53 -05:00
George Bosilca
50cec456fb ompi_request_complete with signal 
Rewrite the ompi_request_complete function to take in account the
with_signal argument. Change the comment to explain the expected
behavior.
Alter all the ompi_request_complete uses to make sure the status of the
request is set before calling ompi_request_complete.

bot🏷️enhancement
 2016-06-02 11:49:12 +09:00
bosilca
b90c83840f Refactor the request completion (#1422) 
* Remodel the request.
Added the wait sync primitive and integrate it into the PML and MTL
infrastructure. The multi-threaded requests are now significantly
less heavy and less noisy (only the threads associated with completed
requests are signaled).

* Fix the condition to release the request.
 2016-05-24 18:20:51 -05:00
Gilles Gouaillardet
b159587325 io/romio: fix filesystem type check on OpenBSD 5.7 
check the existence of the f_type field in struct statfs

Thanks Paul Hargrove for the report
 2016-05-09 13:54:46 +09:00
Edgar Gabriel
e65e189671 io/ompio: fix file size after file_preallocate 
Thanks for @dalcini for reporting
Fixes open-mpi/ompi#1633
 2016-05-06 08:20:59 -05:00
Edgar Gabriel
d358965134 io/ompio: fix envelope of datatype returned by getview 
Thanks for @dalcini for reporting
Fixes open-mpi/ompi#1632
 2016-05-06 08:19:48 -05:00
Jeff Squyres
f167be1c91 ompio: always return valid info from FILE_GET_INFO 
MPI-3.1 says that even if no info keys are set on the file, we need to
return a new, empty info.

Thanks to Lisandro Dalcin for identifying the issue.

Fixes open-mpi/ompi#1630

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-05-05 12:03:29 -07:00
Nathan Hjelm
ae0ffbb67f Merge pull request #1397 from hjelmn/enable_thread_multiple 
ompi: always enable MPI_THREAD_MULTIPLE support
 2016-04-23 08:40:22 -06:00
Karol Mroz
5c54184986 romio: replace deprecated hindexed call 
Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
 2016-04-10 19:56:22 +02:00
Nathan Hjelm
230d04327e ompi: always enable MPI_THREAD_MULTIPLE support 
This commit removes the --with-mpi-thread-multiple option and forces
MPI_THREAD_MULTIPLE support. This cleans up an abstration violation
in opal where OMPI_ENABLE_THREAD_MULTIPLE determines whether the
opal_using_threads is meaningful. To reduce the performance hit on
MPI_THREAD_SINGLE programs an OPAL_UNLIKELY is used for the
check on opal_using_threads in OPAL_THREAD_* macros.

This commit does not clean up the arguments to the various functions
that take whether muti-threading support is enabled. That should be
done at a later time.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2016-02-23 10:02:14 -07:00
Edgar Gabriel
4bbb22bd0b add a new field to the ompio data structure (stripe_count) and set it correctly on pvfs2 and lustre. 2016-01-17 09:48:49 -06:00
Gilles Gouaillardet
fec973efda configury: test portability 
replace test ... -o ... with test ... || test ...
and test ... -a ... with test ... && test ...
 2015-12-28 13:58:45 +09:00
rhc54
aa17bdf6e8 Merge pull request #1239 from rhc54/topic/cleanup 
Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX
 2015-12-21 07:23:31 -08:00
Edgar Gabriel
46c20a1246 correctly set all variables storing information on the file pointer position to zero when setting the file view 2015-12-21 09:41:39 +09:00
Ralph Castain
ac6289dca6 Cleanup the warnings from the ompi layer when compiling optimized under Mac OSX 
Cleanup per George's comments
 2015-12-17 17:39:15 -08:00
Gilles Gouaillardet
59a361b781 ompio: correctly handle zero f_cc_size in mca_io_ompio_simple_grouping 2015-12-08 17:00:11 +09:00
Edgar Gabriel
9e5ade4e8b argh, a debugging sleep statement got into the source code. 2015-11-16 13:26:57 -06:00
Edgar Gabriel
dbfbcdecd5 make adjustments for the default settings of grouping parameters and the default contiguous group size option. 
minor bug fix in the simple grouping strategy.
 2015-11-16 08:17:27 -06:00
Edgar Gabriel
27628774c7 add a new option for a simple aggregator selection which has zero communication costs. 2015-11-16 08:17:26 -06:00
Edgar Gabriel
66c1ea5fcb change the default value of the grouping option. Also add new grouping option which skips the refinement step in the aggregator selection. 2015-11-16 08:17:23 -06:00
Edgar Gabriel
e8e117503d reduce the communication volume during MPI_File_set_view 2015-11-16 08:17:22 -06:00
Edgar Gabriel
f97655f28e make sure the iov buffer is initialized to zero, otherwise bad things can happen for 0-byte contributions on a process. 2015-10-15 12:46:01 -05:00
William Throwe
80bb41a079 ROMIO configure looks for lstat in wrong header 
ROMIO configure looks for lstat in wrong header

The ROMIO configure script checks for a declaration of lstat in
unistd.h, but, at least on the Linux machines I checked, lstat is in
sys/stat.h.  (The detection failure led to a linker error when building
ROMIO as part of OpenMPI on one of my admittedly strangely configured
machines, somehow.)  It appears from the man page that either location
is possible, so check both.

(cherry picked from mpich/mpich@7b8bd055df)

Signed-off-by: Rob Latham <robl@mcs.anl.gov>
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-09-23 11:56:53 -06:00
Edgar Gabriel
3734a38370 this file should have been part of the previous commit. for removeing io_ompio_nbc.[ch] 2015-09-18 09:28:25 -05:00
Edgar Gabriel
cf46a6bd4d remove the io_ompio_nbc.[ch] files, they are not used anymore at this point in time. 2015-09-18 09:26:25 -05:00
Gilles Gouaillardet
fe351f6801 io: do not cast way the const modifier when this is not necessary 
update the io framework and mpi c bindings
 2015-09-09 09:18:58 +09:00
Nathan Hjelm
f451876058 Merge pull request #825 from hjelmn/white_space_purge 
periodic trailing whitespace purge
 2015-08-25 19:23:52 -06:00
Edgar Gabriel
70078175ee fix coverty warning 72107 2015-08-25 09:23:37 -05:00
Edgar Gabriel
a73f9470e0 fix coverty warning 1269829 2015-08-25 09:22:48 -05:00
Nathan Hjelm
156ce6af21 periodic whitespace purge 
Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
 2015-08-24 09:32:33 -06:00
Edgar Gabriel
b0461f8d3c the back pointer from the ompio_file structure to the ompi_file_t structure 
has to be set earlier in case the user disables the lazy_open option.
 2015-08-19 17:11:42 -05:00