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25191 Коммитов

Автор SHA1 Сообщение Дата
Jeff Squyres
e7d46b96a3 Merge pull request #1680 from yburette/topic/fix_provider_selection
mtl/ofi: Change default provider selection behavior.
2016-05-23 15:06:02 -04:00
Nathan Hjelm
37e9e2c660 mca/base: fix typo in flag enumeration
This commit fixes a typo in flag enumeration that can cause the parser
to miss valid flags or crash.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-23 12:21:34 -06:00
Gilles Gouaillardet
bca44592af Merge pull request #1643 from ggouaillardet/topic/romio_openbsd57
io/romio: fix filesystem type check on OpenBSD
2016-05-23 16:33:56 +09:00
Gilles Gouaillardet
d5a2ac6f2f btl/openib: fix #if vs #ifdef 2016-05-23 14:27:33 +09:00
Gilles Gouaillardet
5a8cbe5a8f btl/openib: remove obsolete reference to MEMORY_LINUX_MALLOC_ALIGN_ENABLED macro 2016-05-23 14:12:21 +09:00
Gilles Gouaillardet
8466a3daf3 pmix: update .gitignore
git ignore opal/mca/pmix/pmix114/pmix/include/pmix/autogen/config.h.in
git rm opal/mca/pmix/pmix114/pmix/include/pmix/autogen/config.h.in
git ignore opal/mca/pmix/pmix*/...
2016-05-23 11:58:07 +09:00
George Bosilca
5be5c40f93 Merge branch 'master' of github.com:open-mpi/ompi 2016-05-21 16:02:45 -04:00
George Bosilca
16d9f71d01 Correctly compute the space needed for the args.
Add checks to bail out if our precomputed value is less
than needed (we are already at fault).

bot:milestone:v1.10.3
bot:milestone:v2.0
bot🏷️bug
bot:assign: @ggouaillardet
2016-05-21 16:01:16 -04:00
George Bosilca
0641005dab Only check the parameters on valid dimensions. 2016-05-21 15:54:04 -04:00
George Bosilca
6aac0d9c22 Remove useless output stream. 2016-05-21 15:54:04 -04:00
Nathan Hjelm
31bfeede82 bml/r2: always add btl progress function
This commit changes the behavior of bml/r2 from conditionally
registering btl progress functions to always registering progress
functions. Any progress function beloning to a btl that is not yet in
use is registered as low-priority. As soon as a proc is added that
will make use of the btl is is re-registered normally.

This works around an issue with some btls. In order to progress a
first message from an unknown peer both ugni and openib need to have
their progress functions called. If either btl is not in use after the
first call to add_procs the callback was never happening. This commit
ensures the btl progress function is called at some point but the
number of progress callbacks is reduced from normal to ensure lower
overhead when a btl is not used. The current ratio is 1 low priority
progress callback for every 8 calls to opal_progress().

Fixes open-mpi/ompi#1676

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-21 15:54:04 -04:00
Nathan Hjelm
6195ec0727 Merge pull request #1677 from hjelmn/add_procs_lockup
bml/r2: always add btl progress function
2016-05-21 11:23:28 -06:00
Ralph Castain
4e0749f03d Remove verbose error messages 2016-05-20 10:04:26 -07:00
rhc54
5ba8344cc5 Merge pull request #1650 from rhc54/topic/envlist
Move the registration of MCA params out of the init of the var system…
2016-05-20 10:00:55 -07:00
Ralph Castain
42ecffb6d0 Move the registration of MCA params out of the init of the var system - put them in with the rest of the OPAL MCA param registrations
Take another shot at untangling the spaghetti

orterun: fix for command line parsing

orte-submit calls opal_init_util () before parsing out MCA command line
options (-mca, -am, etc). This prevents mpirun from setting opal MCA
variables for some frameworks as well as the MCA base. This is because
when a framework is opened all of its variables are set to read-only.
Eventually we want to lift this restriction on some MCA variables but
since -mca is affected we must parse out the MCA command line options
before opal_init_util(). This commit fixes the bug by adding a new
option to opal_cmd_line_parse (ignore unknown option) so orte-submit
can pre-parse the command line for MCA options.

Signed-off-by: Nathan Hjelm <hjelmn@me.com>

Minor cleanups to avoid releasing/recreating the cmd line
2016-05-20 09:59:50 -07:00
Brice Goglin
ca621330a6 Update hwloc to v1.11.3
Remove contrib/windows/
Merge hwlocXYZ/hwloc/README-ompi.txt back into hwlocXYZ/README-ompi.txt instead of having both.
Add README.txt in new automake-required directory contrib/systemd/

Keep the following patches applied since they are not in 1.11.3
    linux: actually enable libudev based on the result of AC_CHECK_LIB
    (cherry picked from open-mpi/hwloc@9549fd59af)
    configure: check the actual may_alias syntax that we use
    (cherry picked from open-mpi/hwloc@0ab7af5e90)
2016-05-20 07:20:16 +02:00
Gilles Gouaillardet
5ec1eedbae Merge pull request #1682 from ggouaillardet/topic/fix-ethtool-again
opal/util/ethtool: use system ethtool_cmd_speed when available
2016-05-20 10:30:43 +09:00
Gilles Gouaillardet
cbbdce05b1 pmix/pmix114: silence a warning 2016-05-20 09:35:26 +09:00
Gilles Gouaillardet
ed3fd1775f rcache/grdma: silence a warning 2016-05-20 09:30:29 +09:00
Gilles Gouaillardet
a01a5487a8 opal/util/ethtool: use system ethtool_cmd_speed when available
Refs: open-mpi/ompi#1679
2016-05-20 09:05:09 +09:00
rhc54
99d3c283f5 Merge pull request #1681 from rhc54/topic/pmixupdate
Update PMIx 114 to current release candidate
2016-05-19 13:50:16 -07:00
Ralph Castain
6f743f81b6 Update PMIx 114 to current release candidate 2016-05-19 12:55:05 -07:00
Jeff Squyres
110755be37 Merge pull request #1679 from jsquyres/pr/fix-ethtool
ethtool: better handle portability
2016-05-19 15:09:51 -04:00
rhc54
fcf62a8708 Merge pull request #1678 from rhc54/topic/mutex
Unlock the mutex prior to destructing it.
2016-05-19 11:48:26 -07:00
yohann
2f0cde791a mtl/ofi: Change default provider selection behavior.
As more providers get added to libfabric, the default exclude list would need
to be updated.
Instead, we choose to include only the providers known to work by default.

New default:
  - include: psm,psm2,gni
  - exclude: none
2016-05-19 10:59:25 -07:00
Jeff Squyres
87233aae49 ethtool: better handle portability
Be sure to handle the case where we don't have ethtool support at all.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-05-19 10:57:14 -07:00
Ralph Castain
a35bb8453a Unlock the mutex prior to destructing it.
Thanks to Nicolas Joly for the report
2016-05-19 10:36:58 -07:00
George Bosilca
50b37758d4 Don't overwrite the function argument.
In a MPMD setup the app in the jdata can be NULL, so make sure we
don't leave the main argument to an inconsistent value.
2016-05-19 10:35:23 -04:00
Gilles Gouaillardet
fd93d236b1 opal/util/ethtool: fix compilation on older Linux when struct ethtool_cmd has no speed_hi field
Refs: open-mpi/ompi#1628
2016-05-19 11:58:04 +09:00
Nathan Hjelm
a679cc072b bml/r2: always add btl progress function
This commit changes the behavior of bml/r2 from conditionally
registering btl progress functions to always registering progress
functions. Any progress function beloning to a btl that is not yet in
use is registered as low-priority. As soon as a proc is added that
will make use of the btl is is re-registered normally.

This works around an issue with some btls. In order to progress a
first message from an unknown peer both ugni and openib need to have
their progress functions called. If either btl is not in use after the
first call to add_procs the callback was never happening. This commit
ensures the btl progress function is called at some point but the
number of progress callbacks is reduced from normal to ensure lower
overhead when a btl is not used. The current ratio is 1 low priority
progress callback for every 8 calls to opal_progress().

Fixes open-mpi/ompi#1676

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-18 16:00:31 -06:00
Jeff Squyres
66f53ec29a Merge pull request #1628 from kmroz/wip-btl-tcp-ethtool-speed
btl/tcp: autodetect bandwidth and latency if unset by the user
2016-05-18 12:12:55 -04:00
Nathan Hjelm
9371a6a52d Merge pull request #1673 from hjelmn/fix_rcache_deadlock
rcache: fix deadlock in multi-threaded environments
2016-05-18 08:32:21 -07:00
Karol Mroz
ca6ddf3270 btl/tcp: autodetect bandwidth and latency if unset
Fixes open-mpi/ompi#120

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-05-18 16:25:52 +02:00
Karol Mroz
b9c6c43c6b btl/tcp: add default defines for bandwidth and latency
Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-05-18 16:25:52 +02:00
Karol Mroz
31e33a64f9 opal/util: add function to obtain interface speed
If kernel ethtool_cmd_speed() is not available, use copies if possible.

Signed-off-by: Karol Mroz <mroz.karol@gmail.com>
2016-05-18 16:25:51 +02:00
Nathan Hjelm
ab8ed177f5 rcache: fix deadlock in multi-threaded environments
This commit fixes several bugs in the registration cache code:

 - Fix a programming error in the grdma invalidation function that can
   cause an infinite loop if more than 100 registrations are
   associated with a munmapped region. This happens because the
   mca_rcache_base_vma_find_all function returns the same 100
   registrations on each call. This has been fixed by adding an
   iterate function to the vma tree interface.

 - Always obtain the vma lock when needed. This is required because
   there may be other threads in the system even if
   opal_using_threads() is false. Additionally, since it is safe to do
   so (the vma lock is recursive) the vma interface has been made
   thread safe.

 - Avoid calling free() while holding a lock. This avoids race
   conditions with locks held outside the Open MPI code.

Fixes open-mpi/ompi#1654.

Signed-off-by: Nathan Hjelm <hjelmn@lanl.gov>
2016-05-17 09:02:40 -06:00
Nathan Hjelm
f6938868bd Merge pull request #1659 from hjelmn/sync_64
sync_builtin: check for 64-bit atomic support
2016-05-17 05:40:04 -07:00
Rainer Keller
d749cc0a08 Incorporate @jsquyres suggestions about OMPI_V_GEN & echo'ing another line. 2016-05-17 14:21:35 +02:00
Rainer Keller
0fb0913cd4 In case, we do not build Fortran, Fortran 2008 or CXX, the regexp in make_manpage.pl will delete all
lines up to the next ".fi" -- which for functions that do not implement the corresponding interface
as code will have all eliminated.
Change to delete the man page's content up to the next section header ".SH"

Also in case of make V=1, we'd like to see the command line, too.

Amend OMPI_Affinity_str according to the other man-pages definitions.
2016-05-17 14:21:35 +02:00
rhc54
8b534e9897 Merge pull request #1668 from rhc54/topic/slurm
When direct launching applications, we must allow the MPI layer to pr…
2016-05-16 12:23:19 -07:00
Howard Pritchard
9066d26c67 Merge pull request #1672 from hppritcha/topic/fix_cray_pmix_bust
pmix/cray: fix some breakage
2016-05-16 20:06:51 +01:00
Jeff Squyres
daa26f4578 Merge pull request #1671 from jsquyres/pr/fix-bml-opal-output-func-names
bml_r2: use __func__ to identify function names
2016-05-16 14:17:04 -04:00
Howard Pritchard
1a676e5b35 pmix/cray: fix some breakage
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2016-05-16 12:45:05 -05:00
Jeff Squyres
5275e5e2a1 bml_r2: use __func__ to identify function names
There were some old/stale function names in some debugging/verbose
opal_output calls.  Use __func__ instead, so that they won't become
stale in the future.

Thanks to Durga Choudhury for pointing out the issue.

Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
2016-05-16 11:06:47 -04:00
Gilles Gouaillardet
4e21933a74 memory/patcher: declare __curbrk as extern in order not to generate an (unitialized) common symbol 2016-05-16 09:30:11 +09:00
rhc54
e0fef390a8 Merge pull request #1670 from rhc54/topic/dashhost
In MPMD case, add slots given to each of the executables instead of overwriting
2016-05-15 13:51:54 -07:00
Ralph Castain
ca69403cc8 In MPMD case, add slots given to each of the executables instead of overwriting 2016-05-15 08:55:43 -07:00
Ralph Castain
01ba861f2a When direct launching applications, we must allow the MPI layer to progress during RTE-level barriers. Neither SLURM nor Cray provide non-blocking fence functions, so push those calls into a separate event thread (use the OPAL async thread for this purpose so we don't create another one) and let the MPI thread sping in wait_for_completion. This also restores the "lazy" completion during MPI_Finalize to minimize cpu utilization.
Update external as well

Revise the change: we still need the MPI_Barrier in MPI_Finalize when we use a blocking fence, but do use the "lazy" wait for completion. Replace the direct logic in MPI_Init with a cleaner macro
2016-05-14 16:37:00 -07:00
Aurélien Bouteiller
7f65c2b18e forgot to update copyright in commits 627a89b 4899c89 2016-05-13 11:34:59 -04:00
George Bosilca
37e03e3e5b Don't update req_bytes_received if no bytes were received. 2016-05-12 23:39:32 -04:00