ports/openmpi
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Ralph Castain
f633d5c1b1 Initialize var 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 21:08:45 -08:00
rhc54
2a01cc853a Merge pull request #2512 from rhc54/topic/dyn 
Allow a PMIx tool to spawn a job
 2016-12-03 18:15:19 -08:00
Ralph Castain
79cde184ad Allow a PMIx tool to spawn a job 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 16:00:47 -08:00
rhc54
003f7d308f Merge pull request #2504 from hppritcha/topic/fix_pmix_base_help_file 
pmix: Fix pmix base help file.
 2016-12-03 11:57:07 -08:00
rhc54
cda9bd3dd9 Merge pull request #2511 from rhc54/topic/nohang 
Avoid hanging in show_help if PMIx was unable to initialize
 2016-12-03 11:27:55 -08:00
rhc54
fa04ba9ef1 Merge pull request #2510 from rhc54/topic/cleanup 
Fix the session directory cleanup - only remove the jobfam session di…
 2016-12-03 10:53:35 -08:00
Ralph Castain
a43fae74a5 Avoid hanging in show_help if PMIx was unable to initialize 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 10:12:58 -08:00
Ralph Castain
af9a55ccf1 Fix the session directory cleanup - only remove the jobfam session dir level if we are the local daemon and are cleaning up our own session directory. 
Update the scaling test to run more trials and report the options being tested each time

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-03 09:59:18 -08:00
rhc54
b030f9acc0 Merge pull request #2506 from rhc54/topic/pmixext 
Now that PMIx has settled on its release strategy and numbering, update the OPAL pmix framework to track
 2016-12-03 07:58:42 -08:00
Jeff Squyres
6319332258 Merge pull request #2491 from OMGtechy/master 
Swapped use of fprintf for opal_output_verbose
 2016-12-03 07:32:03 -05:00
Ralph Castain
a4e3f615e3 Fix executable modes of pmix config scripts 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 20:50:59 -08:00
Ralph Castain
342dbfcf4e Update 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 20:33:03 -08:00
Ralph Castain
8e64382edf Update to correct tarball 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 19:16:07 -08:00
Ralph Castain
1a0bccb536 Now that PMIx has settled on its release strategy and numbering, update the OPAL pmix framework to track 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 15:44:43 -08:00
Howard Pritchard
3049848731 Fix pmix base help file. 
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
 2016-12-02 15:03:22 -06:00
Valentin Petrov
e13e264185 Detect hcoll_context_free at config 
Needed for better flexibility with versioning

Signed-off-by: Valentin Petrov <valentinp@mellanox.com>
 2016-12-02 22:09:20 +02:00
rhc54
0366f3aedc Merge pull request #2497 from rhc54/topic/signal 
Per discussion on email thread, restore placement of child procs in t…
 2016-12-02 08:18:45 -08:00
Jeff Squyres
1504ffb18d ompi_file_delete: output a better error message 
Signed-off-by: Jeff Squyres <jsquyres@cisco.com>
 2016-12-02 11:08:04 -05:00
Ralph Castain
88313debc2 Per discussion on email thread, restore placement of child procs in their own process group so that any signal sent to one of our children is automatically propagated to any child process they might have spawned. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-02 03:36:22 -08:00
rhc54
b2e36f0824 Merge pull request #2493 from rhc54/topic/pmix 
Update to latest PMIx master
 2016-12-01 16:02:25 -08:00
rhc54
88fbdf82c9 Merge pull request #2492 from rhc54/topic/connect 
Fix IOF when outputing to files - the remote orteds were failing to o…
 2016-12-01 16:00:13 -08:00
Ralph Castain
6041467df0 Update to latest PMIx master 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-01 14:47:44 -08:00
Ralph Castain
dd491db21f Fix IOF when outputing to files - the remote orteds were failing to output stdout/err from their procs. 
Silence a warning in orted_submit

Protect against a free'd value in an error path when forming oob tcp connections

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-12-01 14:12:47 -08:00
Joshua Gerrard
d5a45bc12e Swapped use of fprintf for opal_output_verbose 
Signed-off-by: Joshua Gerrard <enquiries@joshuagerrard.com>
 2016-12-01 19:56:06 +00:00
Gilles Gouaillardet
3a76a78bff btl/openib: plug a memory leak in btl_openib_register_mca_params() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
c9aeccb84e opal/if: open the if framework once in opal_init_util 
the if framework is no more open in opal_if*, which plugs
several memory leaks

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
188b9668e4 ompi/attribute: plug a memory leak in set_value() 
OBJ_RELEASE() the previous attribute value if any

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
d94e8c97a0 ompi/runtime: release F90 types in ompi_mpi_finalize() 
F90 types cannot be freed by the enduser as specified by the standard.
but since they are ompi_datatype_dup'ed from predefined datatypes,
they have to be explicitly free'd at finalize time in order
to avoid a memory leak.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:30 +09:00
Gilles Gouaillardet
45732fd764 hwloc/base: fix a memory leak in buffer_cleanup() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00
Gilles Gouaillardet
2739346a18 opal: invoke mca_base_close() in opal_finalize_util() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00
Gilles Gouaillardet
b2aca6c753 ompi/proc: plug a memory leak in ompi_proc_unpack() 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00
Gilles Gouaillardet
ae278fd5df ompi/runtime: plug a memory leak 
declare ompi_mpi_show_mca_params_file as NULL
so MPI_T_Init_thread() can be invoked without leaking memory

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 14:24:29 +09:00
Gilles Gouaillardet
43ee08b20e ompi/c: remove unused variable in [i]gatherv 
Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:59:25 +09:00
Gilles Gouaillardet
fe4c4e95eb coll/libnbc: fix MPI_IN_PLACE handling in i{gather,scatter}[v] 
MPI_IN_PLACE is only relevant on the root task, so only test is there

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:59:25 +09:00
Gilles Gouaillardet
1a8a276914 coll/libnbc: use zero-size messages in ibarrier 
and silence a valgrind warning

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:59:25 +09:00
Gilles Gouaillardet
2eec6a08b5 coll/base: fix ompi_coll_base_reduce_scatter_intra_nonoverlapping() with MPI_IN_PLACE 
invoke underlying scatterv with MPI_IN_PLACE when appropriate

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:59:24 +09:00
Gilles Gouaillardet
8b7999469b coll/base: fix MPI_IN_PLACE in ompi_coll_base_reduce_generic() 
avoid copying data to itself when MPI_IN_PLACE is used

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:59:24 +09:00
rhc54
eeec99ac12 Merge pull request #2484 from artpol84/oob/msg_drop 
orte/oob/tcp: Plug the memory leak.
 2016-11-30 20:36:40 -08:00
Gilles Gouaillardet
3f1486a508 pml/ob1: initialize one more field in mca_pml_ob1_recv_request_progress_rget() 
always initialize recvreq->req_rdma_offset to zero.

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-12-01 13:14:23 +09:00
Jeff Squyres
756d09fd6f Merge pull request #2457 from OMGtechy/master 
Fixed -Werror=unused-result warnings in comm_cid.c by adding error checking
 2016-11-30 20:41:55 -05:00
Artem Polyakov
58300afff2 orte/oob/tcp: Plug the memory leak. 
Plug coverity defect CID 1396541.

Signed-off-by: Artem Polyakov <artpol84@gmail.com>
 2016-12-01 06:48:25 +07:00
rhc54
b6647ce286 Merge pull request #2480 from rhc54/topic/sessiondir 
Fix session directory cleanup
 2016-11-30 12:24:37 -08:00
Gilles Gouaillardet
15098161a3 coll/libnbc: add some comments on how locks are used 
no code change

Signed-off-by: Gilles Gouaillardet <gilles@rist.or.jp>
 2016-11-30 17:29:51 +09:00
Ralph Castain
9c596a6f54 We added another layer to the session directory tree (the jobfam layer), but we forgot to include it in the teardown procedure, thus causing us to leave droppings behind. Add the jobfam_session_dir to the teardown, and ensure that all levels are addressed 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-29 20:51:28 -08:00
rhc54
d4c4babcc0 Merge pull request #2479 from rhc54/topic/dbgupdate 
Do not resend if max_retries is exceeded.
 2016-11-29 20:36:29 -08:00
Ralph Castain
47ed214458 Do not resend if max_retries is exceeded. Make a verbose output available to tell us where the intended message was to go. 
Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-29 19:21:16 -08:00
rhc54
d31f173744 Merge pull request #2476 from rhc54/topic/dbgupdate 
Bring forward the debugger-related changes
 2016-11-29 19:10:32 -08:00
Ralph Castain
d5fd635efe Bring forward the debugger-related changes 
Refs https://github.com/open-mpi/ompi/pull/2425

Signed-off-by: Ralph Castain <rhc@open-mpi.org>
 2016-11-29 13:15:20 -08:00
Joshua Gerrard
7cf5de12b9 Fixed -Werror=unused-result warnings in comm_cid.c by adding error checking 
Signed-off-by: Joshua Gerrard <enquiries@joshuagerrard.com>
 2016-11-29 21:08:12 +00:00
rhc54
ef5ee73579 Merge pull request #2472 from rhc54/topic/mpiinit 
Never collect data when doing the fence at the end of MPI_Init
 2016-11-29 11:48:50 -08:00